Guide to the Human Genome
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Name: CX3CR1 Sequence: fasta or formatted (355aa) NCBI GI: 4503171
Description:

chemokine (C-X3-C motif) receptor 1

Referenced in:

Chemokines and Their Receptors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.8         24           3
 C cysteine            2.8         10           2
 D aspartate           3.9         14           2
 E glutamate           3.9         14           1
 F phenylalanine       9.6         34           3
 G glycine             4.5         16           1
 H histidine           2.5          9           1
 I isoleucine          6.8         24           2
 K lysine              4.5         16           2
 L leucine            13.8         49           4
 M methionine          2.0          7           1
 N asparagine          4.5         16           2
 P proline             2.8         10           1
 Q glutamine           2.0          7           1
 R arginine            3.1         11           2
 S serine              7.0         25           3
 T threonine           5.6         20           2
 V valine              8.2         29           2
 W tryptophan          1.1          4           1
 Y tyrosine            4.5         16           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   chemokine (C-X3-C motif) receptor 1 
CCR4                  0.370   chemokine (C-C motif) receptor 4 
CCR2                  0.359   chemokine (C-C motif) receptor 2 isoform B 
CCR2                  0.352   chemokine (C-C motif) receptor 2 isoform A 
CCR8                  0.352   chemokine (C-C motif) receptor 8 
CCR1                  0.350   chemokine (C-C motif) receptor 1 
CCR3                  0.346   CC chemokine receptor 3 
CCR3                  0.346   CC chemokine receptor 3 
CCR5                  0.340   chemokine (C-C motif) receptor 5 
CCR5                  0.340   chemokine (C-C motif) receptor 5 
CCBP2                 0.272   chemokine binding protein 2 
CXCR4                 0.266   chemokine (C-X-C motif) receptor 4 isoform b 
CXCR4                 0.266   chemokine (C-X-C motif) receptor 4 isoform a 
CCR6                  0.260   chemokine (C-C motif) receptor 6 
CCR6                  0.260   chemokine (C-C motif) receptor 6 
XCR1                  0.258   XC chemokine receptor 1 
XCR1                  0.258   XC chemokine receptor 1 
CCRL1                 0.255   chemokine (C-C motif) receptor-like 1 
CCRL1                 0.255   chemokine (C-C motif) receptor-like 1 
CCR7                  0.239   chemokine (C-C motif) receptor 7 precursor 
IL8RB                 0.230   interleukin 8 receptor beta 
CCR9                  0.229   chemokine (C-C motif) receptor 9 isoform B 
CCR9                  0.229   chemokine (C-C motif) receptor 9 isoform A 
IL8RA                 0.223   interleukin 8 receptor alpha 
CXCR3                 0.221   chemokine (C-X-C motif) receptor 3 isoform B 
CXCR3                 0.221   chemokine (C-X-C motif) receptor 3 isoform A 
CXCR6                 0.211   G protein-coupled receptor TYMSTR 
CXCR5                 0.207   Burkitt lymphoma receptor 1 isoform 1 
CXCR5                 0.207   Burkitt lymphoma receptor 1 isoform 2 
CXCR7                 0.205   chemokine orphan receptor 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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