Guide to the Human Genome
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Name: CCBP2 Sequence: fasta or formatted (384aa) NCBI GI: 13929467
Description:

chemokine binding protein 2

Referenced in:

Chemokines and Their Receptors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.6         33           3
 C cysteine            2.3          9           2
 D aspartate           3.1         12           1
 E glutamate           3.6         14           2
 F phenylalanine       7.8         30           2
 G glycine             5.2         20           2
 H histidine           2.9         11           1
 I isoleucine          4.4         17           1
 K lysine              2.9         11           1
 L leucine            15.4         59           4
 M methionine          2.6         10           1
 N asparagine          3.6         14           1
 P proline             3.6         14           1
 Q glutamine           3.4         13           2
 R arginine            4.2         16           3
 S serine              8.1         31           2
 T threonine           3.9         15           1
 V valine              7.8         30           2
 W tryptophan          2.1          8           1
 Y tyrosine            4.4         17           3
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   chemokine binding protein 2 
CCR4                  0.320   chemokine (C-C motif) receptor 4 
CCR1                  0.289   chemokine (C-C motif) receptor 1 
CCR2                  0.274   chemokine (C-C motif) receptor 2 isoform B 
CCR2                  0.268   chemokine (C-C motif) receptor 2 isoform A 
CCR8                  0.268   chemokine (C-C motif) receptor 8 
CCR3                  0.262   CC chemokine receptor 3 
CCR3                  0.262   CC chemokine receptor 3 
CCR5                  0.261   chemokine (C-C motif) receptor 5 
CCR5                  0.261   chemokine (C-C motif) receptor 5 
IL8RB                 0.253   interleukin 8 receptor beta 
CX3CR1                0.250   chemokine (C-X3-C motif) receptor 1 
CXCR3                 0.249   chemokine (C-X-C motif) receptor 3 isoform B 
CXCR3                 0.249   chemokine (C-X-C motif) receptor 3 isoform A 
CCR6                  0.242   chemokine (C-C motif) receptor 6 
CCR6                  0.242   chemokine (C-C motif) receptor 6 
XCR1                  0.242   XC chemokine receptor 1 
XCR1                  0.242   XC chemokine receptor 1 
CCR9                  0.236   chemokine (C-C motif) receptor 9 isoform A 
CCRL1                 0.234   chemokine (C-C motif) receptor-like 1 
CCRL1                 0.234   chemokine (C-C motif) receptor-like 1 
IL8RA                 0.234   interleukin 8 receptor alpha 
CCR9                  0.230   chemokine (C-C motif) receptor 9 isoform B 
CXCR4                 0.226   chemokine (C-X-C motif) receptor 4 isoform a 
CXCR4                 0.226   chemokine (C-X-C motif) receptor 4 isoform b 
CCR7                  0.220   chemokine (C-C motif) receptor 7 precursor 
CXCR5                 0.202   Burkitt lymphoma receptor 1 isoform 1 
CXCR5                 0.202   Burkitt lymphoma receptor 1 isoform 2 
AGTR1                 0.198   angiotensin II receptor, type 1 
AGTR1                 0.198   angiotensin II receptor, type 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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