Guide to the Human Genome
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Name: CXCR5 Sequence: fasta or formatted (327aa) NCBI GI: 14589869
Description:

Burkitt lymphoma receptor 1 isoform 2

Referenced in:

Chemokines and Their Receptors

Other entries for this name:
alt prot [372aa] Burkitt lymphoma receptor 1 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.6         28           1
 C cysteine            4.0         13           2
 D aspartate           1.5          5           1
 E glutamate           2.8          9           1
 F phenylalanine       7.0         23           2
 G glycine             4.9         16           1
 H histidine           4.3         14           2
 I isoleucine          4.9         16           1
 K lysine              2.8          9           1
 L leucine            15.6         51           3
 M methionine          1.5          5           1
 N asparagine          2.8          9           2
 P proline             3.4         11           1
 Q glutamine           2.8          9           1
 R arginine            6.1         20           2
 S serine              7.3         24           2
 T threonine           6.1         20           2
 V valine              9.5         31           2
 W tryptophan          1.8          6           1
 Y tyrosine            2.4          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Burkitt lymphoma receptor 1 isoform 2 
CXCR5                 1.000   Burkitt lymphoma receptor 1 isoform 1 
CXCR3                 0.343   chemokine (C-X-C motif) receptor 3 isoform B 
CXCR3                 0.343   chemokine (C-X-C motif) receptor 3 isoform A 
CCR7                  0.316   chemokine (C-C motif) receptor 7 precursor 
IL8RB                 0.305   interleukin 8 receptor beta 
IL8RA                 0.296   interleukin 8 receptor alpha 
CXCR4                 0.288   chemokine (C-X-C motif) receptor 4 isoform b 
CXCR4                 0.288   chemokine (C-X-C motif) receptor 4 isoform a 
CCR9                  0.278   chemokine (C-C motif) receptor 9 isoform B 
CCR9                  0.278   chemokine (C-C motif) receptor 9 isoform A 
CCR6                  0.253   chemokine (C-C motif) receptor 6 
CCR6                  0.253   chemokine (C-C motif) receptor 6 
CCR8                  0.248   chemokine (C-C motif) receptor 8 
CCR4                  0.245   chemokine (C-C motif) receptor 4 
CCR2                  0.241   chemokine (C-C motif) receptor 2 isoform B 
CCR2                  0.241   chemokine (C-C motif) receptor 2 isoform A 
CCR5                  0.239   chemokine (C-C motif) receptor 5 
CCR5                  0.239   chemokine (C-C motif) receptor 5 
CCBP2                 0.239   chemokine binding protein 2 
CCR1                  0.233   chemokine (C-C motif) receptor 1 
CCR10                 0.230   CC chemokine receptor 10 
CX3CR1                0.225   chemokine (C-X3-C motif) receptor 1 
CCR3                  0.225   CC chemokine receptor 3 
CCR3                  0.225   CC chemokine receptor 3 
CCRL1                 0.222   chemokine (C-C motif) receptor-like 1 
CCRL1                 0.222   chemokine (C-C motif) receptor-like 1 
XCR1                  0.219   XC chemokine receptor 1 
XCR1                  0.219   XC chemokine receptor 1 
CXCR6                 0.209   G protein-coupled receptor TYMSTR 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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