Guide to the Human Genome
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Name: CCR6 Sequence: fasta or formatted (374aa) NCBI GI: 37187860
Description:

chemokine (C-C motif) receptor 6

Referenced in:

Chemokines and Their Receptors

Other entries for this name:
alt mRNA [374aa] chemokine (C-C motif) receptor 6
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.1         23           2
 C cysteine            3.7         14           2
 D aspartate           2.9         11           1
 E glutamate           2.9         11           1
 F phenylalanine       7.5         28           2
 G glycine             4.0         15           1
 H histidine           1.1          4           1
 I isoleucine          7.2         27           2
 K lysine              5.3         20           2
 L leucine            11.5         43           3
 M methionine          3.5         13           1
 N asparagine          4.8         18           1
 P proline             2.1          8           1
 Q glutamine           3.2         12           1
 R arginine            4.5         17           2
 S serine              9.6         36           3
 T threonine           5.6         21           1
 V valine              8.6         32           2
 W tryptophan          1.3          5           1
 Y tyrosine            4.3         16           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   chemokine (C-C motif) receptor 6 
CCR6                  1.000   chemokine (C-C motif) receptor 6 
CCR7                  0.352   chemokine (C-C motif) receptor 7 precursor 
CCR4                  0.323   chemokine (C-C motif) receptor 4 
IL8RA                 0.316   interleukin 8 receptor alpha 
IL8RB                 0.309   interleukin 8 receptor beta 
CCR9                  0.307   chemokine (C-C motif) receptor 9 isoform B 
CCR9                  0.307   chemokine (C-C motif) receptor 9 isoform A 
CXCR6                 0.290   G protein-coupled receptor TYMSTR 
CCRL1                 0.273   chemokine (C-C motif) receptor-like 1 
CCRL1                 0.273   chemokine (C-C motif) receptor-like 1 
CCR3                  0.269   CC chemokine receptor 3 
CCR3                  0.269   CC chemokine receptor 3 
CCR1                  0.269   chemokine (C-C motif) receptor 1 
CXCR3                 0.264   chemokine (C-X-C motif) receptor 3 isoform B 
CXCR3                 0.264   chemokine (C-X-C motif) receptor 3 isoform A 
CCR5                  0.262   chemokine (C-C motif) receptor 5 
CCR5                  0.262   chemokine (C-C motif) receptor 5 
CCR2                  0.262   chemokine (C-C motif) receptor 2 isoform B 
CCR2                  0.262   chemokine (C-C motif) receptor 2 isoform A 
CCR8                  0.261   chemokine (C-C motif) receptor 8 
CCBP2                 0.252   chemokine binding protein 2 
CX3CR1                0.250   chemokine (C-X3-C motif) receptor 1 
CXCR4                 0.244   chemokine (C-X-C motif) receptor 4 isoform b 
CXCR4                 0.244   chemokine (C-X-C motif) receptor 4 isoform a 
CCR10                 0.227   CC chemokine receptor 10 
CXCR5                 0.225   Burkitt lymphoma receptor 1 isoform 1 
CXCR5                 0.223   Burkitt lymphoma receptor 1 isoform 2 
AGTR1                 0.216   angiotensin II receptor, type 1 
AGTR1                 0.216   angiotensin II receptor, type 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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