Guide to the Human Genome
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Name: XCR1 Sequence: fasta or formatted (333aa) NCBI GI: 66932941
Description:

XC chemokine receptor 1

Referenced in:

Chemokines and Their Receptors

Other entries for this name:
alt mRNA [333aa] XC chemokine receptor 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.8         16           1
 C cysteine            3.9         13           2
 D aspartate           1.5          5           1
 E glutamate           3.0         10           1
 F phenylalanine       8.4         28           2
 G glycine             3.0         10           1
 H histidine           2.7          9           1
 I isoleucine          6.0         20           2
 K lysine              2.4          8           1
 L leucine            16.2         54           2
 M methionine          1.2          4           1
 N asparagine          3.0         10           1
 P proline             3.6         12           1
 Q glutamine           3.0         10           2
 R arginine            4.8         16           2
 S serine             10.2         34           2
 T threonine           6.0         20           2
 V valine              8.4         28           2
 W tryptophan          2.7          9           1
 Y tyrosine            5.1         17           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   XC chemokine receptor 1 
XCR1                  1.000   XC chemokine receptor 1 
CCR4                  0.300   chemokine (C-C motif) receptor 4 
CCR8                  0.291   chemokine (C-C motif) receptor 8 
CCBP2                 0.277   chemokine binding protein 2 
CCR5                  0.274   chemokine (C-C motif) receptor 5 
CCR5                  0.274   chemokine (C-C motif) receptor 5 
CX3CR1                0.271   chemokine (C-X3-C motif) receptor 1 
CCR2                  0.270   chemokine (C-C motif) receptor 2 isoform B 
CCR1                  0.268   chemokine (C-C motif) receptor 1 
CCR2                  0.265   chemokine (C-C motif) receptor 2 isoform A 
CCR3                  0.262   CC chemokine receptor 3 
CCR3                  0.262   CC chemokine receptor 3 
IL8RB                 0.259   interleukin 8 receptor beta 
IL8RA                 0.244   interleukin 8 receptor alpha 
CXCR4                 0.230   chemokine (C-X-C motif) receptor 4 isoform b 
CXCR4                 0.230   chemokine (C-X-C motif) receptor 4 isoform a 
CCR6                  0.218   chemokine (C-C motif) receptor 6 
CCR6                  0.218   chemokine (C-C motif) receptor 6 
CXCR5                 0.212   Burkitt lymphoma receptor 1 isoform 1 
CXCR5                 0.212   Burkitt lymphoma receptor 1 isoform 2 
CXCR6                 0.201   G protein-coupled receptor TYMSTR 
CXCR3                 0.201   chemokine (C-X-C motif) receptor 3 isoform B 
CXCR3                 0.201   chemokine (C-X-C motif) receptor 3 isoform A 
CCR7                  0.197   chemokine (C-C motif) receptor 7 precursor 
BDKRB2                0.186   bradykinin receptor B2 
CXCR7                 0.181   chemokine orphan receptor 1 
CCRL2                 0.178   chemokine (C-C motif) receptor-like 2 isoform 2 [Ho...
CCRL2                 0.178   chemokine (C-C motif) receptor-like 2 isoform 1 [Hom...
AGTR1                 0.178   angiotensin II receptor, type 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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