Guide to the Human Genome
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Name: CCR5 Sequence: fasta or formatted (352aa) NCBI GI: 4502639
Description:

chemokine (C-C motif) receptor 5

Referenced in:

Chemokines and Their Receptors
Polymorphism
Viral Receptors

Other entries for this name:
alt mRNA [352aa] chemokine (C-C motif) receptor 5
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.7         20           3
 C cysteine            3.4         12           2
 D aspartate           2.0          7           1
 E glutamate           2.8         10           1
 F phenylalanine       8.8         31           2
 G glycine             4.5         16           1
 H histidine           2.0          7           1
 I isoleucine          9.1         32           2
 K lysine              4.3         15           2
 L leucine            12.2         43           3
 M methionine          2.3          8           1
 N asparagine          4.3         15           2
 P proline             3.1         11           2
 Q glutamine           4.5         16           2
 R arginine            4.3         15           1
 S serine              6.2         22           3
 T threonine           6.0         21           1
 V valine              8.0         28           2
 W tryptophan          1.4          5           1
 Y tyrosine            5.1         18           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   chemokine (C-C motif) receptor 5 
CCR5                  1.000   chemokine (C-C motif) receptor 5 
CCR2                  0.731   chemokine (C-C motif) receptor 2 isoform B 
CCR2                  0.651   chemokine (C-C motif) receptor 2 isoform A 
CCR1                  0.557   chemokine (C-C motif) receptor 1 
CCR3                  0.493   CC chemokine receptor 3 
CCR3                  0.493   CC chemokine receptor 3 
CCR4                  0.478   chemokine (C-C motif) receptor 4 
CCR8                  0.382   chemokine (C-C motif) receptor 8 
CX3CR1                0.342   chemokine (C-X3-C motif) receptor 1 
CCRL2                 0.337   chemokine (C-C motif) receptor-like 2 isoform 2 [Ho...
CCRL2                 0.337   chemokine (C-C motif) receptor-like 2 isoform 1 [Hom...
CCR9                  0.298   chemokine (C-C motif) receptor 9 isoform B 
CCR9                  0.298   chemokine (C-C motif) receptor 9 isoform A 
CCBP2                 0.285   chemokine binding protein 2 
CCR7                  0.282   chemokine (C-C motif) receptor 7 precursor 
CCR6                  0.275   chemokine (C-C motif) receptor 6 
CCR6                  0.275   chemokine (C-C motif) receptor 6 
XCR1                  0.262   XC chemokine receptor 1 
XCR1                  0.262   XC chemokine receptor 1 
IL8RB                 0.253   interleukin 8 receptor beta 
CXCR3                 0.250   chemokine (C-X-C motif) receptor 3 isoform B 
CXCR3                 0.250   chemokine (C-X-C motif) receptor 3 isoform A 
CXCR4                 0.246   chemokine (C-X-C motif) receptor 4 isoform b 
CXCR4                 0.246   chemokine (C-X-C motif) receptor 4 isoform a 
IL8RA                 0.241   interleukin 8 receptor alpha 
CXCR6                 0.234   G protein-coupled receptor TYMSTR 
CCRL1                 0.231   chemokine (C-C motif) receptor-like 1 
CCRL1                 0.231   chemokine (C-C motif) receptor-like 1 
CXCR5                 0.221   Burkitt lymphoma receptor 1 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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