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Search of human proteins with 155029556
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|155029556 hypothetical protein LOC389383 [Homo sapiens]
(100 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|155029556 hypothetical protein LOC389383 [Homo sapiens] 215 5e-57
gi|58218998 hypothetical protein LOC340204 [Homo sapiens] 40 4e-04
gi|4502895 colipase preproprotein [Homo sapiens] 37 0.003
gi|169205072 PREDICTED: hypothetical protein [Homo sapiens] 36 0.006
gi|113424011 PREDICTED: hypothetical protein [Homo sapiens] 36 0.006
gi|239744776 PREDICTED: hypothetical protein [Homo sapiens] 36 0.006
gi|238859649 keratin associated protein 10-8 [Homo sapiens] 30 0.41
gi|17530787 prokineticin 2 isoform b precursor [Homo sapiens] 30 0.41
gi|86990448 chromosome 1 open reading frame 187 [Homo sapiens] 29 0.70
gi|55770876 notch4 preproprotein [Homo sapiens] 29 0.92
gi|194306650 SET domain and mariner transposase fusion [Homo sap... 29 0.92
gi|27436940 reelin isoform b [Homo sapiens] 28 1.6
gi|27436938 reelin isoform a [Homo sapiens] 28 1.6
gi|181336739 multiple EGF-like-domains 11 [Homo sapiens] 28 1.6
gi|38490568 keratin associated protein 10-4 [Homo sapiens] 28 1.6
gi|32140182 keratin associated protein 10-10 [Homo sapiens] 28 1.6
gi|4501913 ADAM metallopeptidase domain 23 preproprotein [Homo s... 28 2.0
gi|38490587 keratin associated protein 10-12 [Homo sapiens] 28 2.0
gi|47078292 integrin beta chain, beta 3 precursor [Homo sapiens] 27 2.7
gi|239752100 PREDICTED: hypothetical protein [Homo sapiens] 27 2.7
gi|239746604 PREDICTED: similar to Keratin-associated protein 10... 27 2.7
gi|116235485 delta-notch-like EGF repeat-containing transmembran... 27 2.7
gi|145275213 coagulation factor XII precursor [Homo sapiens] 27 3.5
gi|148727298 keratin associated protein 10-6 [Homo sapiens] 27 3.5
gi|61743980 stabilin 2 precursor [Homo sapiens] 27 3.5
gi|55743159 WD repeat domain 33 isoform 3 [Homo sapiens] 27 3.5
gi|38490571 keratin associated protein 10-7 [Homo sapiens] 27 3.5
gi|11321565 matrilin 3 precursor [Homo sapiens] 27 4.5
gi|21361449 solute carrier family 2 (facilitated glucose transpo... 27 4.5
gi|239758034 PREDICTED: keratin associated protein 4-8 isoform 3... 26 5.9
>gi|155029556 hypothetical protein LOC389383 [Homo sapiens]
Length = 100
Score = 215 bits (548), Expect = 5e-57
Identities = 100/100 (100%), Positives = 100/100 (100%)
Query: 1 MAAALALVAGVLSGAVLPLWSALPQYKKKITDRCFHHSECYSGCCLMDLDSGGAFCAPRA 60
MAAALALVAGVLSGAVLPLWSALPQYKKKITDRCFHHSECYSGCCLMDLDSGGAFCAPRA
Sbjct: 1 MAAALALVAGVLSGAVLPLWSALPQYKKKITDRCFHHSECYSGCCLMDLDSGGAFCAPRA 60
Query: 61 RITMICLPQTKGATNIICPCRMGLTCISKDLMCSRRCHMI 100
RITMICLPQTKGATNIICPCRMGLTCISKDLMCSRRCHMI
Sbjct: 61 RITMICLPQTKGATNIICPCRMGLTCISKDLMCSRRCHMI 100
>gi|58218998 hypothetical protein LOC340204 [Homo sapiens]
Length = 121
Score = 40.0 bits (92), Expect = 4e-04
Identities = 17/59 (28%), Positives = 27/59 (45%)
Query: 29 KITDRCFHHSECYSGCCLMDLDSGGAFCAPRARITMICLPQTKGATNIICPCRMGLTCI 87
++ + C + +C +GCC D+ + CA + +C Q CPC LTCI
Sbjct: 34 ELKESCIRNQDCETGCCQRAPDNCESHCAEKGSEGSLCQTQVFFGQYRACPCLRNLTCI 92
>gi|4502895 colipase preproprotein [Homo sapiens]
Length = 112
Score = 37.0 bits (84), Expect = 0.003
Identities = 18/53 (33%), Positives = 22/53 (41%)
Query: 34 CFHHSECYSGCCLMDLDSGGAFCAPRARITMICLPQTKGATNIICPCRMGLTC 86
C + ++C S CC G A C A C +T CPC GLTC
Sbjct: 34 CMNSAQCKSNCCQHSSALGLARCTSMASENSECSVKTLYGIYYKCPCERGLTC 86
>gi|169205072 PREDICTED: hypothetical protein [Homo sapiens]
Length = 159
Score = 36.2 bits (82), Expect = 0.006
Identities = 16/43 (37%), Positives = 21/43 (48%)
Query: 26 YKKKITDRCFHHSECYSGCCLMDLDSGGAFCAPRARITMICLP 68
++K D C H EC+S CC+ + C PR I CLP
Sbjct: 116 WRKPNGDFCSSHQECHSQCCIQLREYSPFRCIPRTGILAQCLP 158
Score = 33.5 bits (75), Expect = 0.037
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 28 KKITDRCFHHSECYSGCCLMDLDSGGAFCAPRARITMICLPQTK 71
K I + C H EC S CC ++ + C P+ I + CLP K
Sbjct: 35 KGIGEPCGRHEECQSNCCTINSLAPHTLCTPKT-IFLQCLPWRK 77
Score = 32.3 bits (72), Expect = 0.083
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 33 RCFHHSECYSGCCLMDLDSGGAFCAPRARITMICLPQTK 71
RC H SEC S CC+ + +S C P++ + + C+P K
Sbjct: 82 RCSHDSECQSSCCVRN-NSPQELCTPQS-VFLQCVPWRK 118
>gi|113424011 PREDICTED: hypothetical protein [Homo sapiens]
Length = 159
Score = 36.2 bits (82), Expect = 0.006
Identities = 16/43 (37%), Positives = 21/43 (48%)
Query: 26 YKKKITDRCFHHSECYSGCCLMDLDSGGAFCAPRARITMICLP 68
++K D C H EC+S CC+ + C PR I CLP
Sbjct: 116 WRKPNGDFCSSHQECHSQCCIQLREYSPFRCIPRTGILAQCLP 158
Score = 33.5 bits (75), Expect = 0.037
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 28 KKITDRCFHHSECYSGCCLMDLDSGGAFCAPRARITMICLPQTK 71
K I + C H EC S CC ++ + C P+ I + CLP K
Sbjct: 35 KGIGEPCGRHEECQSNCCTINSLAPHTLCTPKT-IFLQCLPWRK 77
Score = 32.3 bits (72), Expect = 0.083
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 33 RCFHHSECYSGCCLMDLDSGGAFCAPRARITMICLPQTK 71
RC H SEC S CC+ + +S C P++ + + C+P K
Sbjct: 82 RCSHDSECQSSCCVRN-NSPQELCTPQS-VFLQCVPWRK 118
>gi|239744776 PREDICTED: hypothetical protein [Homo sapiens]
Length = 159
Score = 36.2 bits (82), Expect = 0.006
Identities = 16/43 (37%), Positives = 21/43 (48%)
Query: 26 YKKKITDRCFHHSECYSGCCLMDLDSGGAFCAPRARITMICLP 68
++K D C H EC+S CC+ + C PR I CLP
Sbjct: 116 WRKPNGDFCSSHQECHSQCCIQLREYSPFRCIPRTGILAQCLP 158
Score = 33.5 bits (75), Expect = 0.037
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 28 KKITDRCFHHSECYSGCCLMDLDSGGAFCAPRARITMICLPQTK 71
K I + C H EC S CC ++ + C P+ I + CLP K
Sbjct: 35 KGIGEPCRRHEECQSNCCTINSLAPHTLCTPKT-IFLQCLPWRK 77
Score = 32.3 bits (72), Expect = 0.083
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 33 RCFHHSECYSGCCLMDLDSGGAFCAPRARITMICLPQTK 71
RC H SEC S CC+ + +S C P++ + + C+P K
Sbjct: 82 RCSHDSECQSSCCVRN-NSPQELCTPQS-VFLQCVPWRK 118
>gi|238859649 keratin associated protein 10-8 [Homo sapiens]
Length = 259
Score = 30.0 bits (66), Expect = 0.41
Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 34 CFHHSECYSGCCLMDLDSGGAFCAPRARITMICLPQTKGATNIIC 78
C S C S CC A C P + C+P GA+++ C
Sbjct: 145 CCQQSSCQSACCTFS-PCQQACCVPICCKPICCVPVCSGASSLCC 188
>gi|17530787 prokineticin 2 isoform b precursor [Homo sapiens]
Length = 108
Score = 30.0 bits (66), Expect = 0.41
Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 8/66 (12%)
Query: 30 ITDRCFHHSECYSG-CCLMDL-DSGGAFCAPRARITMICLPQTKGAT------NIICPCR 81
IT C S+C G CC + + C P ++ C P T+ + CPC
Sbjct: 30 ITGACDKDSQCGGGMCCAVSIWVKSIRICTPMGKLGDSCHPLTRKVPFFGRRMHHTCPCL 89
Query: 82 MGLTCI 87
GL C+
Sbjct: 90 PGLACL 95
>gi|86990448 chromosome 1 open reading frame 187 [Homo sapiens]
Length = 349
Score = 29.3 bits (64), Expect = 0.70
Identities = 18/59 (30%), Positives = 22/59 (37%), Gaps = 16/59 (27%)
Query: 34 CFHHSECYSGCCLMDLDSGGAFCAPRARITMICLPQTKGATNII---CPCRMGLTCISK 89
C HH +C G C C R +C P +G N C C GL C +K
Sbjct: 274 CDHHQDCLPGTC----------CDLREH---LCTPHNRGLNNKCFDDCMCVEGLRCYAK 319
>gi|55770876 notch4 preproprotein [Homo sapiens]
Length = 2003
Score = 28.9 bits (63), Expect = 0.92
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 9/67 (13%)
Query: 37 HSECYSG----CCLMDLDSG-GAFCAPRARITMICLPQTKGATNIICPCRMGLTCISKDL 91
H C SG C +LD A CAP + C+ + + + P R GL C +D+
Sbjct: 340 HCVCVSGWGGTSCEENLDDCIAATCAPGST----CIDRVGSFSCLCPPGRTGLLCHLEDM 395
Query: 92 MCSRRCH 98
S+ CH
Sbjct: 396 CLSQPCH 402
>gi|194306650 SET domain and mariner transposase fusion [Homo
sapiens]
Length = 684
Score = 28.9 bits (63), Expect = 0.92
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 31 TDRCFHHSECYS-GCCLMDLDSGGAFCAPRARITMIC 66
T C H E Y CL D+ SGG + P ++C
Sbjct: 86 TCSCLRHGENYDDNSCLRDIGSGGKYAEPVFECNVLC 122
>gi|27436940 reelin isoform b [Homo sapiens]
Length = 3458
Score = 28.1 bits (61), Expect = 1.6
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 32 DRCFHHSECYSGCCLMDLDSGGAFC 56
D C H C G C+ D GG +C
Sbjct: 2483 DMCSGHGRCIQGNCVCDEQWGGLYC 2507
>gi|27436938 reelin isoform a [Homo sapiens]
Length = 3460
Score = 28.1 bits (61), Expect = 1.6
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 32 DRCFHHSECYSGCCLMDLDSGGAFC 56
D C H C G C+ D GG +C
Sbjct: 2483 DMCSGHGRCIQGNCVCDEQWGGLYC 2507
>gi|181336739 multiple EGF-like-domains 11 [Homo sapiens]
Length = 1044
Score = 28.1 bits (61), Expect = 1.6
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 9/57 (15%)
Query: 33 RCFHHSEC--YSGCCLMDLDSGGAFCAPRARITMICLPQTKGA-TNIICPCRMGLTC 86
+C H + C +G CL G +C +C P + GA + CPC+ G TC
Sbjct: 190 QCRHGASCDPRAGECLCAPGYTGVYCEE------LCPPGSHGAHCELRCPCQNGGTC 240
>gi|38490568 keratin associated protein 10-4 [Homo sapiens]
Length = 401
Score = 28.1 bits (61), Expect = 1.6
Identities = 13/45 (28%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
Query: 34 CFHHSECYSGCCLMDLDSGGAFCAPRARITMICLPQTKGATNIIC 78
C S C CC G C P + C+P GA++ C
Sbjct: 297 CCQQSSCQPACCTSSQSQQGC-CVPVCCKPVSCVPVCSGASSSCC 340
Score = 26.9 bits (58), Expect = 3.5
Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 6/55 (10%)
Query: 34 CFHHSECYSGCCLMDLDSGGAFCAPRARITMICLPQTKGATNIICPCRMGLTCIS 88
C S C S CC + C + + C P G ++ C ++C+S
Sbjct: 135 CCQQSSCQSACCT------SSPCQQACCVPICCKPVCSGISSSCCQQSSCVSCVS 183
>gi|32140182 keratin associated protein 10-10 [Homo sapiens]
Length = 251
Score = 28.1 bits (61), Expect = 1.6
Identities = 15/72 (20%), Positives = 21/72 (29%), Gaps = 1/72 (1%)
Query: 26 YKKKITDRCFHHSECYSGCCLMDLDSGGAFCAPRARITMICLPQTKGATNIICPCRMGLT 85
Y T C+ S C CC A C P + + C+P + C
Sbjct: 66 YTSSCTTPCYQQSSCQPDCCTSS-PCQQACCVPVCCVPVCCVPVCNKPVCFVPTCSESSP 124
Query: 86 CISKDLMCSRRC 97
+ C C
Sbjct: 125 SCCQQSSCQPTC 136
>gi|4501913 ADAM metallopeptidase domain 23 preproprotein [Homo
sapiens]
Length = 832
Score = 27.7 bits (60), Expect = 2.0
Identities = 21/69 (30%), Positives = 26/69 (37%), Gaps = 5/69 (7%)
Query: 34 CFHHSECYSGCCLMDLDSGGAFCA--PRARITMICLPQTKG--ATNIICPCRMGLTCISK 89
C H ECY CC S GA C+ P T CL Q +G + + C + C
Sbjct: 518 CGFHVECYGLCCKKCSLSNGAHCSDGPCCNNTS-CLFQPRGYECRDAVNECDITEYCTGD 576
Query: 90 DLMCSRRCH 98
C H
Sbjct: 577 SGQCPPNLH 585
>gi|38490587 keratin associated protein 10-12 [Homo sapiens]
Length = 245
Score = 27.7 bits (60), Expect = 2.0
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 34 CFHHSECYSGCCLMDLDSGGAFCAPRARITMICLPQTKGATNIIC 78
C S C CC+ + C P + C+P GA+++ C
Sbjct: 131 CCQQSSCQPACCISS-PCQQSCCVPVCCKPICCVPVCSGASSLCC 174
Score = 27.3 bits (59), Expect = 2.7
Identities = 14/64 (21%), Positives = 22/64 (34%), Gaps = 11/64 (17%)
Query: 34 CFHHSECYSGCCLMDLDSGGAFCAPRARITMICLPQTKGATNIICPCRMGLTCISKDLMC 93
C S C CC C P + ++++C P + A + P +C C
Sbjct: 173 CCQQSSCQPACCTTSC------CRPSSSVSLLCRPVCRPARRVPVP-----SCCVPTSSC 221
Query: 94 SRRC 97
C
Sbjct: 222 QPSC 225
>gi|47078292 integrin beta chain, beta 3 precursor [Homo sapiens]
Length = 788
Score = 27.3 bits (59), Expect = 2.7
Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 5/55 (9%)
Query: 32 DRCFHHSECYSGCCLMDLDSGGAFCAPRARITMICLPQTKGATNIICPCRMGLTC 86
+ C H +C G CL D D G +C R T C+ + ++C R C
Sbjct: 560 EMCSGHGQCSCGDCLCDSDWTGYYCNCTTR-TDTCM----SSNGLLCSGRGKCEC 609
>gi|239752100 PREDICTED: hypothetical protein [Homo sapiens]
Length = 312
Score = 27.3 bits (59), Expect = 2.7
Identities = 25/109 (22%), Positives = 34/109 (31%), Gaps = 11/109 (10%)
Query: 2 AAALALVAGVLSGAVLPLWSALPQYKKKITDRCFHHSECYSGCCLMDLDSGGAF----CA 57
A L LV +S P A + T C S C CC C
Sbjct: 162 APCLTLVCTPVSCVSSPCCQAACE-PSSCTPLCCQQSSCQPACCTSSPSQQSCCVPVCCK 220
Query: 58 PRARITMICLPQTKGATNIIC------PCRMGLTCISKDLMCSRRCHMI 100
P + C+P GA+++ C P +C S CH +
Sbjct: 221 PVCCKPVCCVPVCSGASSLCCQQSSCQPACCTSSCCRPSSSVSLLCHPV 269
>gi|239746604 PREDICTED: similar to Keratin-associated protein 10-8
[Homo sapiens]
Length = 312
Score = 27.3 bits (59), Expect = 2.7
Identities = 25/109 (22%), Positives = 34/109 (31%), Gaps = 11/109 (10%)
Query: 2 AAALALVAGVLSGAVLPLWSALPQYKKKITDRCFHHSECYSGCCLMDLDSGGAF----CA 57
A L LV +S P A + T C S C CC C
Sbjct: 162 APCLTLVCTPVSCVSSPCCQAACE-PSSCTPLCCQQSSCQPACCTSSPSQQSCCVPVCCK 220
Query: 58 PRARITMICLPQTKGATNIIC------PCRMGLTCISKDLMCSRRCHMI 100
P + C+P GA+++ C P +C S CH +
Sbjct: 221 PVCCKPVCCVPVCSGASSLCCQQSSCQPACCTSSCCRPSSSVSLLCHPV 269
>gi|116235485 delta-notch-like EGF repeat-containing transmembrane
[Homo sapiens]
Length = 737
Score = 27.3 bits (59), Expect = 2.7
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 7/36 (19%)
Query: 60 ARITMICLP-------QTKGATNIICPCRMGLTCIS 88
+ T +CLP Q+K I+ PCR G TCIS
Sbjct: 374 SNFTCVCLPGYTGELCQSKIDYCILDPCRNGATCIS 409
>gi|145275213 coagulation factor XII precursor [Homo sapiens]
Length = 615
Score = 26.9 bits (58), Expect = 3.5
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 28 KKITDRCFHHSECYSGCCLMDLDSGGAFCAPR 59
KK+ D C HS C G +++ SG P+
Sbjct: 92 KKVKDHCSKHSPCQKGGTCVNMPSGPHCLCPQ 123
>gi|148727298 keratin associated protein 10-6 [Homo sapiens]
Length = 365
Score = 26.9 bits (58), Expect = 3.5
Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 6/55 (10%)
Query: 34 CFHHSECYSGCCLMDLDSGGAFCAPRARITMICLPQTKGATNIICPCRMGLTCIS 88
C S C S CC + C + + C P G ++ C ++C+S
Sbjct: 135 CCQQSSCQSACCT------SSPCQQACCVPVCCKPVCSGISSSCCQQSSCVSCVS 183
>gi|61743980 stabilin 2 precursor [Homo sapiens]
Length = 2551
Score = 26.9 bits (58), Expect = 3.5
Identities = 19/71 (26%), Positives = 26/71 (36%), Gaps = 14/71 (19%)
Query: 34 CFHHSECY-----SGCCLMDLDSGGAFCAPRARITMICLPQTKG----ATNIICPCRM-- 82
C H +C SG CL + G C +A + +C P N C C +
Sbjct: 2014 CSDHGQCDDGITGSGQCLCETGWTGPSCDTQAVLPAVCTPPCSAHATCKENNTCECNLDY 2073
Query: 83 ---GLTCISKD 90
G+TC D
Sbjct: 2074 EGDGITCTVVD 2084
>gi|55743159 WD repeat domain 33 isoform 3 [Homo sapiens]
Length = 257
Score = 26.9 bits (58), Expect = 3.5
Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 19 LWSALPQYKKKIT-DRCFHHSECY 41
+W L ++++I D CFHH CY
Sbjct: 228 IWDFLRCHEERILRDTCFHHCRCY 251
>gi|38490571 keratin associated protein 10-7 [Homo sapiens]
Length = 370
Score = 26.9 bits (58), Expect = 3.5
Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 6/55 (10%)
Query: 34 CFHHSECYSGCCLMDLDSGGAFCAPRARITMICLPQTKGATNIICPCRMGLTCIS 88
C S C S CC + C + + C P G ++ C ++C+S
Sbjct: 135 CCQQSSCQSACCT------SSPCQQACCVPICCKPVCSGISSSCCQQSSCVSCVS 183
>gi|11321565 matrilin 3 precursor [Homo sapiens]
Length = 486
Score = 26.6 bits (57), Expect = 4.5
Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 12/66 (18%)
Query: 36 HHSECYSGCCLMDLDSGGAFCAPRARITM-------ICLPQTKGATNIICPCRMGLTCIS 88
HH ECY G L++ C+ R + + IC+ + GA + C C G T
Sbjct: 371 HHCECYEG---YTLNADKKTCSVRDKCALGSHGCQHICV--SDGAASYHCDCYPGYTLNE 425
Query: 89 KDLMCS 94
CS
Sbjct: 426 DKKTCS 431
>gi|21361449 solute carrier family 2 (facilitated glucose
transporter), member 8 [Homo sapiens]
Length = 477
Score = 26.6 bits (57), Expect = 4.5
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 54 AFCAPRARITMICLPQTKGAT 74
AFC T+ C+P+TKG T
Sbjct: 446 AFCIFSVLFTLFCVPETKGKT 466
>gi|239758034 PREDICTED: keratin associated protein 4-8 isoform 3
[Homo sapiens]
Length = 204
Score = 26.2 bits (56), Expect = 5.9
Identities = 17/64 (26%), Positives = 24/64 (37%), Gaps = 3/64 (4%)
Query: 34 CFHHSECYSGCCLMDLDSGGAFCAPRARITMICLPQTKGATNIICPCRMGLTCISKDLMC 93
C H S C S CC + C P+ ++ C P + I C C+S C
Sbjct: 73 CCHPSCCISSCCRPSC-CVSSCCKPQCCQSVCCQPNCCRPSCSISSCCRPSCCVSS--CC 129
Query: 94 SRRC 97
+C
Sbjct: 130 KPQC 133
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.331 0.139 0.479
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,137,878
Number of Sequences: 37866
Number of extensions: 165171
Number of successful extensions: 570
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 531
Number of HSP's gapped (non-prelim): 72
length of query: 100
length of database: 18,247,518
effective HSP length: 71
effective length of query: 29
effective length of database: 15,559,032
effective search space: 451211928
effective search space used: 451211928
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.