Guide to the Human Genome
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Name: LOC645277 Sequence: fasta or formatted (159aa) NCBI GI: 113424011
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {159aa} PREDICTED: hypothetical protein
alt prot {159aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             2.5          4           1
 C cysteine           11.3         18           2
 D aspartate           1.3          2           1
 E glutamate           4.4          7           2
 F phenylalanine       2.5          4           1
 G glycine             6.9         11           1
 H histidine           3.8          6           1
 I isoleucine          3.8          6           1
 K lysine              3.8          6           2
 L leucine            14.5         23          11
 M methionine          1.9          3           1
 N asparagine          4.4          7           2
 P proline             8.8         14           1
 Q glutamine           6.9         11           1
 R arginine            5.0          8           1
 S serine              8.8         14           2
 T threonine           3.8          6           1
 V valine              1.9          3           1
 W tryptophan          1.9          3           1
 Y tyrosine            1.9          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC645277             1.000   PREDICTED: hypothetical protein 
LOC645277             0.985   PREDICTED: hypothetical protein 
KRTAP10-1             0.097   keratin associated protein 10-1 
KRTAP10-5             0.082   keratin associated protein 10-5 
KRTAP10-12            0.079   keratin associated protein 10-12 
KRTAP10-4             0.070   keratin associated protein 10-4 
KRTAP10-9             0.070   keratin associated protein 10-9 
KRTAP10-11            0.070   keratin associated protein 10-11 
KRTAP10-10            0.067   keratin associated protein 10-10 
KRTAP10-8             0.061   keratin associated protein 10-8 
KRTAP10-6             0.061   keratin associated protein 10-6 
KRTAP10-7             0.061   keratin associated protein 10-7 
LOC100130599          0.055   PREDICTED: hypothetical protein 
LOC100130599          0.055   PREDICTED: similar to Keratin-associated protein 10...
KRTAP4-4              0.052   keratin associated protein 4.4 
KRTAP10-2             0.052   keratin associated protein 10-2 
KRTAP4-3              0.045   keratin associated protein 4-3 
KRTAP4-8              0.045   PREDICTED: keratin associated protein 4-8 isoform 3...
KRTAP4-8              0.045   PREDICTED: keratin associated protein 4-8 isoform 1...
LOC100134267          0.045   PREDICTED: similar to keratin associated protein 4-...
LOC100134267          0.045   PREDICTED: similar to keratin associated protein 4-...
LOC728318             0.042   PREDICTED: hypothetical protein 
KRTAP4-8              0.042   PREDICTED: keratin associated protein 4-8 isoform 2...
LOC100134267          0.042   PREDICTED: similar to keratin associated protein 4-...
LOC728318             0.042   PREDICTED: hypothetical protein 
LOC728318             0.042   PREDICTED: hypothetical protein 
KRTAP4-8              0.042   PREDICTED: keratin associated protein 4.8 
KRTAP4-8              0.042   keratin associated protein 4.8 
KRTAP4-11             0.039   keratin associated protein 4-11 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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