Guide to the Human Genome
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Name: C6orf126 Sequence: fasta or formatted (100aa) NCBI GI: 155029556
Description:

hypothetical protein LOC389383

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.0         11           3
 C cysteine           11.0         11           2
 D aspartate           4.0          4           1
 E glutamate           1.0          1           1
 F phenylalanine       2.0          2           1
 G glycine             7.0          7           2
 H histidine           3.0          3           2
 I isoleucine          7.0          7           2
 K lysine              5.0          5           3
 L leucine            11.0         11           1
 M methionine          6.0          6           1
 N asparagine          1.0          1           1
 P proline             5.0          5           1
 Q glutamine           2.0          2           1
 R arginine            6.0          6           2
 S serine              7.0          7           1
 T threonine           5.0          5           1
 V valine              3.0          3           1
 W tryptophan          1.0          1           1
 Y tyrosine            2.0          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC389383 
C6orf127              0.079   hypothetical protein LOC340204 
CLPS                  0.063   colipase preproprotein 
LOC645277             0.058   PREDICTED: hypothetical protein 
LOC645277             0.058   PREDICTED: hypothetical protein 
LOC645277             0.058   PREDICTED: hypothetical protein 
KRTAP10-8             0.026   keratin associated protein 10-8 
PROK2                 0.026   prokineticin 2 isoform b precursor 
C1orf187              0.021   chromosome 1 open reading frame 187 
NOTCH4                0.021   notch4 preproprotein 
SETMAR                0.021   SET domain and mariner transposase fusion 
RELN                  0.016   reelin isoform b 
RELN                  0.016   reelin isoform a 
MEGF11                0.016   multiple EGF-like-domains 11 
KRTAP10-4             0.016   keratin associated protein 10-4 
KRTAP10-10            0.016   keratin associated protein 10-10 
ADAM23                0.016   ADAM metallopeptidase domain 23 preproprotein 
KRTAP10-12            0.016   keratin associated protein 10-12 
ITGB3                 0.011   integrin beta chain, beta 3 precursor 
LOC100130599          0.011   PREDICTED: hypothetical protein 
LOC100130599          0.011   PREDICTED: similar to Keratin-associated protein 10...
DNER                  0.011   delta-notch-like EGF repeat-containing transmembran...
F12                   0.011   coagulation factor XII precursor 
KRTAP10-6             0.011   keratin associated protein 10-6 
STAB2                 0.011   stabilin 2 precursor 
WDR33                 0.011   WD repeat domain 33 isoform 3 
KRTAP10-7             0.011   keratin associated protein 10-7 
MATN3                 0.011   matrilin 3 precursor 
SLC2A8                0.011   solute carrier family 2 (facilitated glucose transpo...
KRTAP4-8              0.005   PREDICTED: keratin associated protein 4-8 isoform 3...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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