Guide to the Human Genome
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Name: RELN Sequence: fasta or formatted (3460aa) NCBI GI: 27436938
Description:

reelin isoform a

Referenced in:

Cerebellum
Epidermal Growth Factor

Other entries for this name:
alt prot [3458aa] reelin isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.7        164           3
 C cysteine            3.5        120           1
 D aspartate           5.5        191           2
 E glutamate           4.9        169           2
 F phenylalanine       5.0        172           3
 G glycine             8.1        280           2
 H histidine           3.0        103           2
 I isoleucine          5.6        195           3
 K lysine              3.2        110           3
 L leucine             8.1        280           3
 M methionine          2.0         70           2
 N asparagine          4.7        163           2
 P proline             5.0        173           2
 Q glutamine           5.0        173           2
 R arginine            4.5        156           4
 S serine              9.2        320           3
 T threonine           6.0        207           3
 V valine              5.6        193           2
 W tryptophan          2.7         94           2
 Y tyrosine            3.7        127           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   reelin isoform a 
RELN                  0.999   reelin isoform b 
SPON1                 0.007   spondin 1, extracellular matrix protein 
TNR                   0.003   tenascin R 
TNC                   0.003   tenascin C precursor 
TNXB                  0.003   tenascin XB isoform 1 precursor 
ITGB3                 0.003   integrin beta chain, beta 3 precursor 
TNN                   0.003   tenascin N 
ODZ1                  0.003   odz, odd Oz/ten-m homolog 1 isoform 3 
ODZ1                  0.003   odz, odd Oz/ten-m homolog 1 isoform 2 
ODZ1                  0.003   odz, odd Oz/ten-m homolog 1 isoform 1 
ODZ2                  0.003   odz, odd Oz/ten-m homolog 2 
ODZ3                  0.003   odz, odd Oz/ten-m homolog 3 
ADAM32                0.003   a disintegrin and metalloprotease domain 32 
ADAM23                0.003   ADAM metallopeptidase domain 23 preproprotein 
VWDE                  0.002   von Willebrand factor D and EGF domains 
ITGBL1                0.002   integrin, beta-like 1 (with EGF-like repeat domains) ...
STAB2                 0.002   stabilin 2 precursor 
ITGB8                 0.002   integrin, beta 8 precursor 
NOTCH4                0.002   notch4 preproprotein 
ODZ4                  0.002   odz, odd Oz/ten-m homolog 4 
NAGPA                 0.002   N-acetylglucosamine-1-phosphodiester alpha-N-acetylg...
HHIP                  0.002   hedgehog-interacting protein 
MEGF6                 0.002   EGF-like-domain, multiple 3 
JAG1                  0.002   jagged 1 precursor 
SELE                  0.002   selectin E precursor 
HSPG2                 0.002   heparan sulfate proteoglycan 2 
STAB1                 0.002   stabilin 1 precursor 
ITGB6                 0.002   integrin, beta 6 
ADAM11                0.002   ADAM metallopeptidase domain 11 preproprotein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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