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Search of human proteins with 154937342
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|154937342 ring finger protein 190 [Homo sapiens]
(808 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|154937342 ring finger protein 190 [Homo sapiens] 1639 0.0
gi|154937340 ring finger protein 190 [Homo sapiens] 1639 0.0
gi|12383066 axotrophin [Homo sapiens] 174 4e-43
gi|33589846 membrane-associated ring finger (C3HC4) 6 [Homo sapi... 62 3e-09
gi|50539414 cellular modulator of immune recognition isoform 7 [... 62 3e-09
gi|50539412 cellular modulator of immune recognition isoform 6 [... 62 3e-09
gi|50539410 cellular modulator of immune recognition isoform 8 [... 62 3e-09
gi|8923613 membrane-associated RING-CH protein I [Homo sapiens] 60 6e-09
gi|53729334 membrane-associated ring finger (C3HC4) 2 isoform 2 ... 54 4e-07
gi|53729332 membrane-associated ring finger (C3HC4) 2 isoform 1 ... 54 4e-07
gi|53729330 membrane-associated ring finger (C3HC4) 2 isoform 1 ... 54 4e-07
gi|30425370 membrane-associated ring finger (C3HC4) 3 [Homo sapi... 49 2e-05
gi|156523244 membrane-associated ring finger (C3HC4) 11 [Homo sa... 45 2e-04
gi|31377595 zinc finger CCCH-type containing 18 [Homo sapiens] 45 3e-04
gi|148806908 fibronectin type III domain containing 1 [Homo sapi... 44 5e-04
gi|89001107 dentin sialophosphoprotein preproprotein [Homo sapiens] 44 8e-04
gi|57977325 membrane-associated ring finger (C3HC4) 4 [Homo sapi... 44 8e-04
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 42 0.002
gi|157694494 MYB binding protein 1a isoform 1 [Homo sapiens] 42 0.002
gi|157694492 MYB binding protein 1a isoform 2 [Homo sapiens] 42 0.002
gi|224548936 hypothetical protein LOC100170229 [Homo sapiens] 40 0.009
gi|4758172 dentin matrix acidic phosphoprotein 1 isoform 1 precu... 40 0.009
gi|121256621 dentin matrix acidic phosphoprotein 1 isoform 2 pre... 40 0.009
gi|207113162 Treacher Collins-Franceschetti syndrome 1 isoform e... 40 0.009
gi|207113160 Treacher Collins-Franceschetti syndrome 1 isoform d... 40 0.009
gi|57164977 Treacher Collins-Franceschetti syndrome 1 isoform a ... 40 0.009
gi|57164979 Treacher Collins-Franceschetti syndrome 1 isoform c ... 40 0.009
gi|40255016 membrane-associated RING-CH protein IX [Homo sapiens] 39 0.015
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 39 0.015
gi|239745153 PREDICTED: similar to Putative golgin subfamily A m... 39 0.025
>gi|154937342 ring finger protein 190 [Homo sapiens]
Length = 808
Score = 1639 bits (4243), Expect = 0.0
Identities = 808/808 (100%), Positives = 808/808 (100%)
Query: 1 MLHDARDRQKFFSDVQYLRDMQHKVDSEYQACLRRQEYRRDPNEKKRDQFWGQETSFERS 60
MLHDARDRQKFFSDVQYLRDMQHKVDSEYQACLRRQEYRRDPNEKKRDQFWGQETSFERS
Sbjct: 1 MLHDARDRQKFFSDVQYLRDMQHKVDSEYQACLRRQEYRRDPNEKKRDQFWGQETSFERS 60
Query: 61 RFSSRSSSKQSSSEEDALTEPRSSIKISAFKCDSKLPAIDQTSVKQKHKSTMTVRKAEKV 120
RFSSRSSSKQSSSEEDALTEPRSSIKISAFKCDSKLPAIDQTSVKQKHKSTMTVRKAEKV
Sbjct: 61 RFSSRSSSKQSSSEEDALTEPRSSIKISAFKCDSKLPAIDQTSVKQKHKSTMTVRKAEKV 120
Query: 121 DPSEPSPADQAPMVLLRKRKPNLRRFTVSPESHSPRASGDRSRQKQQWPAKVPVPRGADQ 180
DPSEPSPADQAPMVLLRKRKPNLRRFTVSPESHSPRASGDRSRQKQQWPAKVPVPRGADQ
Sbjct: 121 DPSEPSPADQAPMVLLRKRKPNLRRFTVSPESHSPRASGDRSRQKQQWPAKVPVPRGADQ 180
Query: 181 VVQQEGLMCNTKLKRPNQERRNLVPSSQPMTENAPDRAKKGDPSAPSQSELHPALSQAFQ 240
VVQQEGLMCNTKLKRPNQERRNLVPSSQPMTENAPDRAKKGDPSAPSQSELHPALSQAFQ
Sbjct: 181 VVQQEGLMCNTKLKRPNQERRNLVPSSQPMTENAPDRAKKGDPSAPSQSELHPALSQAFQ 240
Query: 241 GKNSPQVLSEFSGPPLTPTTVGGPRKASFRFRDEDFYSILSLNSRRESDDTEEETQSEEC 300
GKNSPQVLSEFSGPPLTPTTVGGPRKASFRFRDEDFYSILSLNSRRESDDTEEETQSEEC
Sbjct: 241 GKNSPQVLSEFSGPPLTPTTVGGPRKASFRFRDEDFYSILSLNSRRESDDTEEETQSEEC 300
Query: 301 LWVGVRSPCSPSHHKRSRFGGTSTPQAKNKNFEENAENCRGHSSRRSEPSHGSLRISNAM 360
LWVGVRSPCSPSHHKRSRFGGTSTPQAKNKNFEENAENCRGHSSRRSEPSHGSLRISNAM
Sbjct: 301 LWVGVRSPCSPSHHKRSRFGGTSTPQAKNKNFEENAENCRGHSSRRSEPSHGSLRISNAM 360
Query: 361 EPATERPSAGQRLSQDPGLPDRESATEKDRGGSENAKKSPLSWDTKSEPRQEVGVNAENV 420
EPATERPSAGQRLSQDPGLPDRESATEKDRGGSENAKKSPLSWDTKSEPRQEVGVNAENV
Sbjct: 361 EPATERPSAGQRLSQDPGLPDRESATEKDRGGSENAKKSPLSWDTKSEPRQEVGVNAENV 420
Query: 421 WSDCISVEHRPGTHDSEGYWKDYLNSSQNSLDYFISGRPISPRSSVNSSYNPPASFMHSA 480
WSDCISVEHRPGTHDSEGYWKDYLNSSQNSLDYFISGRPISPRSSVNSSYNPPASFMHSA
Sbjct: 421 WSDCISVEHRPGTHDSEGYWKDYLNSSQNSLDYFISGRPISPRSSVNSSYNPPASFMHSA 480
Query: 481 LRDDIPVDLSMSSTSVHSSDSEGNSGFHVCQPLSPIRNRTPFASAENHNYFPVNSAHEFA 540
LRDDIPVDLSMSSTSVHSSDSEGNSGFHVCQPLSPIRNRTPFASAENHNYFPVNSAHEFA
Sbjct: 481 LRDDIPVDLSMSSTSVHSSDSEGNSGFHVCQPLSPIRNRTPFASAENHNYFPVNSAHEFA 540
Query: 541 VREAEDTTLTSQPQGAPLYTDLLLNPQGNLSLVDSSSSSPSRMNSEGHLHVSGSLQENTP 600
VREAEDTTLTSQPQGAPLYTDLLLNPQGNLSLVDSSSSSPSRMNSEGHLHVSGSLQENTP
Sbjct: 541 VREAEDTTLTSQPQGAPLYTDLLLNPQGNLSLVDSSSSSPSRMNSEGHLHVSGSLQENTP 600
Query: 601 FTFFAVSHFPNQNDNGSRMAASGFTDEKETSKIKADPEKLKKLQESLLEEDSEEEGDLCR 660
FTFFAVSHFPNQNDNGSRMAASGFTDEKETSKIKADPEKLKKLQESLLEEDSEEEGDLCR
Sbjct: 601 FTFFAVSHFPNQNDNGSRMAASGFTDEKETSKIKADPEKLKKLQESLLEEDSEEEGDLCR 660
Query: 661 ICQIAGGSPSNPLLEPCGCVGSLQFVHQECLKKWLKVKITSGADLGAVKTCEMCKQGLLV 720
ICQIAGGSPSNPLLEPCGCVGSLQFVHQECLKKWLKVKITSGADLGAVKTCEMCKQGLLV
Sbjct: 661 ICQIAGGSPSNPLLEPCGCVGSLQFVHQECLKKWLKVKITSGADLGAVKTCEMCKQGLLV 720
Query: 721 DLGDFNMIEFYQKHQQSQAQNELMNSGLYLVLLLHLYEQRFAELMRLNHNQVERERLSRN 780
DLGDFNMIEFYQKHQQSQAQNELMNSGLYLVLLLHLYEQRFAELMRLNHNQVERERLSRN
Sbjct: 721 DLGDFNMIEFYQKHQQSQAQNELMNSGLYLVLLLHLYEQRFAELMRLNHNQVERERLSRN 780
Query: 781 YPQPRTEENENSELGDGNEGSISQSQVV 808
YPQPRTEENENSELGDGNEGSISQSQVV
Sbjct: 781 YPQPRTEENENSELGDGNEGSISQSQVV 808
>gi|154937340 ring finger protein 190 [Homo sapiens]
Length = 808
Score = 1639 bits (4243), Expect = 0.0
Identities = 808/808 (100%), Positives = 808/808 (100%)
Query: 1 MLHDARDRQKFFSDVQYLRDMQHKVDSEYQACLRRQEYRRDPNEKKRDQFWGQETSFERS 60
MLHDARDRQKFFSDVQYLRDMQHKVDSEYQACLRRQEYRRDPNEKKRDQFWGQETSFERS
Sbjct: 1 MLHDARDRQKFFSDVQYLRDMQHKVDSEYQACLRRQEYRRDPNEKKRDQFWGQETSFERS 60
Query: 61 RFSSRSSSKQSSSEEDALTEPRSSIKISAFKCDSKLPAIDQTSVKQKHKSTMTVRKAEKV 120
RFSSRSSSKQSSSEEDALTEPRSSIKISAFKCDSKLPAIDQTSVKQKHKSTMTVRKAEKV
Sbjct: 61 RFSSRSSSKQSSSEEDALTEPRSSIKISAFKCDSKLPAIDQTSVKQKHKSTMTVRKAEKV 120
Query: 121 DPSEPSPADQAPMVLLRKRKPNLRRFTVSPESHSPRASGDRSRQKQQWPAKVPVPRGADQ 180
DPSEPSPADQAPMVLLRKRKPNLRRFTVSPESHSPRASGDRSRQKQQWPAKVPVPRGADQ
Sbjct: 121 DPSEPSPADQAPMVLLRKRKPNLRRFTVSPESHSPRASGDRSRQKQQWPAKVPVPRGADQ 180
Query: 181 VVQQEGLMCNTKLKRPNQERRNLVPSSQPMTENAPDRAKKGDPSAPSQSELHPALSQAFQ 240
VVQQEGLMCNTKLKRPNQERRNLVPSSQPMTENAPDRAKKGDPSAPSQSELHPALSQAFQ
Sbjct: 181 VVQQEGLMCNTKLKRPNQERRNLVPSSQPMTENAPDRAKKGDPSAPSQSELHPALSQAFQ 240
Query: 241 GKNSPQVLSEFSGPPLTPTTVGGPRKASFRFRDEDFYSILSLNSRRESDDTEEETQSEEC 300
GKNSPQVLSEFSGPPLTPTTVGGPRKASFRFRDEDFYSILSLNSRRESDDTEEETQSEEC
Sbjct: 241 GKNSPQVLSEFSGPPLTPTTVGGPRKASFRFRDEDFYSILSLNSRRESDDTEEETQSEEC 300
Query: 301 LWVGVRSPCSPSHHKRSRFGGTSTPQAKNKNFEENAENCRGHSSRRSEPSHGSLRISNAM 360
LWVGVRSPCSPSHHKRSRFGGTSTPQAKNKNFEENAENCRGHSSRRSEPSHGSLRISNAM
Sbjct: 301 LWVGVRSPCSPSHHKRSRFGGTSTPQAKNKNFEENAENCRGHSSRRSEPSHGSLRISNAM 360
Query: 361 EPATERPSAGQRLSQDPGLPDRESATEKDRGGSENAKKSPLSWDTKSEPRQEVGVNAENV 420
EPATERPSAGQRLSQDPGLPDRESATEKDRGGSENAKKSPLSWDTKSEPRQEVGVNAENV
Sbjct: 361 EPATERPSAGQRLSQDPGLPDRESATEKDRGGSENAKKSPLSWDTKSEPRQEVGVNAENV 420
Query: 421 WSDCISVEHRPGTHDSEGYWKDYLNSSQNSLDYFISGRPISPRSSVNSSYNPPASFMHSA 480
WSDCISVEHRPGTHDSEGYWKDYLNSSQNSLDYFISGRPISPRSSVNSSYNPPASFMHSA
Sbjct: 421 WSDCISVEHRPGTHDSEGYWKDYLNSSQNSLDYFISGRPISPRSSVNSSYNPPASFMHSA 480
Query: 481 LRDDIPVDLSMSSTSVHSSDSEGNSGFHVCQPLSPIRNRTPFASAENHNYFPVNSAHEFA 540
LRDDIPVDLSMSSTSVHSSDSEGNSGFHVCQPLSPIRNRTPFASAENHNYFPVNSAHEFA
Sbjct: 481 LRDDIPVDLSMSSTSVHSSDSEGNSGFHVCQPLSPIRNRTPFASAENHNYFPVNSAHEFA 540
Query: 541 VREAEDTTLTSQPQGAPLYTDLLLNPQGNLSLVDSSSSSPSRMNSEGHLHVSGSLQENTP 600
VREAEDTTLTSQPQGAPLYTDLLLNPQGNLSLVDSSSSSPSRMNSEGHLHVSGSLQENTP
Sbjct: 541 VREAEDTTLTSQPQGAPLYTDLLLNPQGNLSLVDSSSSSPSRMNSEGHLHVSGSLQENTP 600
Query: 601 FTFFAVSHFPNQNDNGSRMAASGFTDEKETSKIKADPEKLKKLQESLLEEDSEEEGDLCR 660
FTFFAVSHFPNQNDNGSRMAASGFTDEKETSKIKADPEKLKKLQESLLEEDSEEEGDLCR
Sbjct: 601 FTFFAVSHFPNQNDNGSRMAASGFTDEKETSKIKADPEKLKKLQESLLEEDSEEEGDLCR 660
Query: 661 ICQIAGGSPSNPLLEPCGCVGSLQFVHQECLKKWLKVKITSGADLGAVKTCEMCKQGLLV 720
ICQIAGGSPSNPLLEPCGCVGSLQFVHQECLKKWLKVKITSGADLGAVKTCEMCKQGLLV
Sbjct: 661 ICQIAGGSPSNPLLEPCGCVGSLQFVHQECLKKWLKVKITSGADLGAVKTCEMCKQGLLV 720
Query: 721 DLGDFNMIEFYQKHQQSQAQNELMNSGLYLVLLLHLYEQRFAELMRLNHNQVERERLSRN 780
DLGDFNMIEFYQKHQQSQAQNELMNSGLYLVLLLHLYEQRFAELMRLNHNQVERERLSRN
Sbjct: 721 DLGDFNMIEFYQKHQQSQAQNELMNSGLYLVLLLHLYEQRFAELMRLNHNQVERERLSRN 780
Query: 781 YPQPRTEENENSELGDGNEGSISQSQVV 808
YPQPRTEENENSELGDGNEGSISQSQVV
Sbjct: 781 YPQPRTEENENSELGDGNEGSISQSQVV 808
>gi|12383066 axotrophin [Homo sapiens]
Length = 704
Score = 174 bits (440), Expect = 4e-43
Identities = 91/187 (48%), Positives = 129/187 (68%), Gaps = 9/187 (4%)
Query: 620 AASGFTDEKETSKIKADPEKLKKLQESLLEEDSEEE-GDLCRICQIAGGSPSNPLLEPCG 678
+A G +D+ +++ + DPE+L+K++ESLL EDSEEE GDLCRICQ+A S SN L+EPC
Sbjct: 513 SADGKSDKTKSAPSR-DPERLQKIKESLLLEDSEEEEGDLCRICQMAAASSSNLLIEPCK 571
Query: 679 CVGSLQFVHQECLKKWLKVKITSGADLGAVKTCEMCKQGLLVDLGDFNMIEFYQKHQQSQ 738
C GSLQ+VHQ+C+KKWL+ KI SG+ L AV TCE+CK+ L ++L DF++ E ++ H Q
Sbjct: 572 CTGSLQYVHQDCMKKWLQAKINSGSSLEAVTTCELCKEKLELNLEDFDIHELHRAHANEQ 631
Query: 739 AQNELMNSGLYLVLLLHLYEQRFAELMRLNHNQVERER-------LSRNYPQPRTEENEN 791
A+ E ++SGLYLV+LLHL EQ F+++M + R R L + T E+++
Sbjct: 632 AEYEFISSGLYLVVLLHLCEQSFSDMMGNTNEPSTRVRFINLARTLQAHMEDLETSEDDS 691
Query: 792 SELGDGN 798
E GD N
Sbjct: 692 EEDGDHN 698
>gi|33589846 membrane-associated ring finger (C3HC4) 6 [Homo
sapiens]
Length = 910
Score = 61.6 bits (148), Expect = 3e-09
Identities = 29/65 (44%), Positives = 41/65 (63%), Gaps = 10/65 (15%)
Query: 651 DSEEEGDLCRICQIAGGSPSNPLLEPCGCVGSLQFVHQECLKKWLKVKITSGADLGAVKT 710
D+ EE D+CR+C+ + G+P PL PC C GS++F+HQECL +WLK +
Sbjct: 2 DTAEE-DICRVCR-SEGTPEKPLYHPCVCTGSIKFIHQECLVQWLK--------HSRKEY 51
Query: 711 CEMCK 715
CE+CK
Sbjct: 52 CELCK 56
>gi|50539414 cellular modulator of immune recognition isoform 7
[Homo sapiens]
Length = 291
Score = 61.6 bits (148), Expect = 3e-09
Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 9/98 (9%)
Query: 657 DLCRICQIAGGSPSNPLLEPCGCVGSLQFVHQECLKKWLKVKITSGADLGAVKTCEMCKQ 716
D+CRIC G S PL+ PC C GSL FVHQ CL++W+K T + CE+CK
Sbjct: 78 DICRICHCEGDDES-PLITPCHCTGSLHFVHQACLQQWIKSSDT--------RCCELCKY 128
Query: 717 GLLVDLGDFNMIEFYQKHQQSQAQNELMNSGLYLVLLL 754
+++ + ++ + S + ++M S + V+ +
Sbjct: 129 EFIMETKLKPLRKWEKLQMTSSERRKIMCSVTFHVIAI 166
>gi|50539412 cellular modulator of immune recognition isoform 6
[Homo sapiens]
Length = 291
Score = 61.6 bits (148), Expect = 3e-09
Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 9/98 (9%)
Query: 657 DLCRICQIAGGSPSNPLLEPCGCVGSLQFVHQECLKKWLKVKITSGADLGAVKTCEMCKQ 716
D+CRIC G S PL+ PC C GSL FVHQ CL++W+K T + CE+CK
Sbjct: 78 DICRICHCEGDDES-PLITPCHCTGSLHFVHQACLQQWIKSSDT--------RCCELCKY 128
Query: 717 GLLVDLGDFNMIEFYQKHQQSQAQNELMNSGLYLVLLL 754
+++ + ++ + S + ++M S + V+ +
Sbjct: 129 EFIMETKLKPLRKWEKLQMTSSERRKIMCSVTFHVIAI 166
>gi|50539410 cellular modulator of immune recognition isoform 8
[Homo sapiens]
Length = 291
Score = 61.6 bits (148), Expect = 3e-09
Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 9/98 (9%)
Query: 657 DLCRICQIAGGSPSNPLLEPCGCVGSLQFVHQECLKKWLKVKITSGADLGAVKTCEMCKQ 716
D+CRIC G S PL+ PC C GSL FVHQ CL++W+K T + CE+CK
Sbjct: 78 DICRICHCEGDDES-PLITPCHCTGSLHFVHQACLQQWIKSSDT--------RCCELCKY 128
Query: 717 GLLVDLGDFNMIEFYQKHQQSQAQNELMNSGLYLVLLL 754
+++ + ++ + S + ++M S + V+ +
Sbjct: 129 EFIMETKLKPLRKWEKLQMTSSERRKIMCSVTFHVIAI 166
>gi|8923613 membrane-associated RING-CH protein I [Homo sapiens]
Length = 272
Score = 60.5 bits (145), Expect = 6e-09
Identities = 27/65 (41%), Positives = 38/65 (58%), Gaps = 9/65 (13%)
Query: 657 DLCRICQIAGGSPSNPLLEPCGCVGSLQFVHQECLKKWLKVKITSGADLGAVKTCEMCKQ 716
D+CRIC G S PL+ PC C G+L+FVHQ CL +W+K T + CE+CK
Sbjct: 61 DICRICHCEGDEES-PLITPCRCTGTLRFVHQSCLHQWIKSSDT--------RCCELCKY 111
Query: 717 GLLVD 721
+++
Sbjct: 112 DFIME 116
>gi|53729334 membrane-associated ring finger (C3HC4) 2 isoform 2
[Homo sapiens]
Length = 176
Score = 54.3 bits (129), Expect = 4e-07
Identities = 28/71 (39%), Positives = 36/71 (50%), Gaps = 10/71 (14%)
Query: 651 DSEEEGDLCRICQIAGGSPSNPLLEPCGCVGSLQFVHQECLKKWLKVKITSGADLGAVKT 710
D+ +G CRIC G+ LL PCGC G+L VH+ CL+KWL TS
Sbjct: 56 DTPSDGPFCRICH--EGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTS--------Y 105
Query: 711 CEMCKQGLLVD 721
CE+C V+
Sbjct: 106 CELCHTEFAVE 116
>gi|53729332 membrane-associated ring finger (C3HC4) 2 isoform 1
[Homo sapiens]
Length = 246
Score = 54.3 bits (129), Expect = 4e-07
Identities = 28/71 (39%), Positives = 36/71 (50%), Gaps = 10/71 (14%)
Query: 651 DSEEEGDLCRICQIAGGSPSNPLLEPCGCVGSLQFVHQECLKKWLKVKITSGADLGAVKT 710
D+ +G CRIC G+ LL PCGC G+L VH+ CL+KWL TS
Sbjct: 56 DTPSDGPFCRICH--EGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTS--------Y 105
Query: 711 CEMCKQGLLVD 721
CE+C V+
Sbjct: 106 CELCHTEFAVE 116
>gi|53729330 membrane-associated ring finger (C3HC4) 2 isoform 1
[Homo sapiens]
Length = 246
Score = 54.3 bits (129), Expect = 4e-07
Identities = 28/71 (39%), Positives = 36/71 (50%), Gaps = 10/71 (14%)
Query: 651 DSEEEGDLCRICQIAGGSPSNPLLEPCGCVGSLQFVHQECLKKWLKVKITSGADLGAVKT 710
D+ +G CRIC G+ LL PCGC G+L VH+ CL+KWL TS
Sbjct: 56 DTPSDGPFCRICH--EGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTS--------Y 105
Query: 711 CEMCKQGLLVD 721
CE+C V+
Sbjct: 106 CELCHTEFAVE 116
>gi|30425370 membrane-associated ring finger (C3HC4) 3 [Homo
sapiens]
Length = 253
Score = 48.5 bits (114), Expect = 2e-05
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 10/79 (12%)
Query: 636 DPEKLKKLQESLLEEDSEEEGDLCRICQIAGGSPSNPLLEPCGCVGSLQFVHQECLKKWL 695
D + L + +L + + +CRIC GS LL PC C G+L +H+ CL+ WL
Sbjct: 48 DGQLLSTVVRTLATQSPFNDRPMCRICH--EGSSQEDLLSPCECTGTLGTIHRSCLEHWL 105
Query: 696 KVKITSGADLGAVKTCEMC 714
TS CE+C
Sbjct: 106 SSSNTS--------YCELC 116
>gi|156523244 membrane-associated ring finger (C3HC4) 11 [Homo
sapiens]
Length = 402
Score = 45.4 bits (106), Expect = 2e-04
Identities = 26/99 (26%), Positives = 40/99 (40%), Gaps = 10/99 (10%)
Query: 616 GSRMAASGFTDEKETSKIKADPEKLKKLQESLLEEDSEEEGDLCRICQIAGGSPSNPLLE 675
G G D+ ET + + + + +C+IC G+ LL
Sbjct: 127 GGERERRGAGDQPETRSVCSSRSSSSGGGDQRAGHQHQHHQPICKIC--FQGAEQGELLN 184
Query: 676 PCGCVGSLQFVHQECLKKWLKVKITSGADLGAVKTCEMC 714
PC C GS+++ HQ CL KW+ + TCE+C
Sbjct: 185 PCRCDGSVRYTHQLCLLKWISER--------GSWTCELC 215
>gi|31377595 zinc finger CCCH-type containing 18 [Homo sapiens]
Length = 953
Score = 45.1 bits (105), Expect = 3e-04
Identities = 87/416 (20%), Positives = 150/416 (36%), Gaps = 60/416 (14%)
Query: 6 RDRQKFFSDVQYLRDMQHKVDSEYQACLRRQEYRR------DPNEKKRDQFWGQETSFER 59
RDR++ + R+ +H+ D E Q R++E+ R + + + RD+ +E E+
Sbjct: 423 RDRERERRQREREREREHERDKERQR--RKEEWERERAKRDEKDRQHRDRDREKEREKEK 480
Query: 60 SRFSSRSSSKQSSSEEDALTEPRSSIKISAFKCDSKLPAIDQTSVKQKHKSTMTVRKAEK 119
+ RS S E E ++ + K P S K+K +++ +A +
Sbjct: 481 GKPKPRSPQPPSRQAEPPKKEAATTGPQVKRADEWKDPWRRSKSPKKKLGVSVSPSRARR 540
Query: 120 VDPSEPSPADQAPMVLLRKRKPNL--------RRFTVSPESHSPRA------SGDRSRQK 165
+ S A + R + R + S S+S R+ SG RSR +
Sbjct: 541 RRKTSASSASASNSSRSSSRSSSYSGSGSSRSRSRSSSYSSYSSRSSRHSSFSGSRSRSR 600
Query: 166 --QQWPAKVPVPRGADQVVQQEGLMCNTKLKRPNQERRNLVPSSQP-----MTENAPDRA 218
P+ P P ++ +G K + + P P T P+
Sbjct: 601 SFSSSPSPSPTPSPHRPSIRTKGEPAPPPGKAGEKSVKKPAPPPAPPQATKTTAPVPEPT 660
Query: 219 KKGDPSAPSQSE---LHPALSQAFQGKNSPQVLSEFSGPPLTPTTVGGPRKASFRFRDED 275
K GDP + E P + G S S +SG +S R R
Sbjct: 661 KPGDPREARRKERPARTPPRRRTLSGSGSGSG-SSYSG-------------SSSRSRSLS 706
Query: 276 FYSILSLNSRRESDDTEEETQSEECLWVGVRSPCSPSHHKRSRFGGTSTPQAKNKNFEEN 335
S+ S++S S + SE+ ++ + SP S + + T + K+K +
Sbjct: 707 VSSVSSVSSATSSSSSAHSVDSED-MYADLASPVSSASSRSPAPAQTRKEKGKSKKEDGV 765
Query: 336 AENCRGHSSRRSEPSHGSLRISNAMEPATERPSAGQRLSQDPGLPDRESATEKDRG 391
E R R S+ P + +P AG + SQ P P + + +G
Sbjct: 766 KEEKR-------------KRDSSTQPPKSAKPPAGGKSSQQPSTPQQAPPGQPQQG 808
>gi|148806908 fibronectin type III domain containing 1 [Homo sapiens]
Length = 1894
Score = 44.3 bits (103), Expect = 5e-04
Identities = 65/277 (23%), Positives = 107/277 (38%), Gaps = 44/277 (15%)
Query: 151 ESHSPRASGDRSRQKQQWPAKVPVPRGADQVVQQEGLMCNTKLKRPNQERRNLVPSSQPM 210
E HSP+A S + PA+ P R + T + P Q+ V +SQ
Sbjct: 961 EGHSPKAQPG-STDRHASPARPPAARSQQHPSVPRRM---TPGRAPQQQPPPPVATSQ-- 1014
Query: 211 TENAPDRAKKGDPSAPSQSELHPALSQAFQGKNSPQVLSEFSGPPLTPTTVGGPRKASFR 270
+ P + +PSQ L +L+QA + + + Q S S P T ++ G + +
Sbjct: 1015 --HHPGPQSRDAGRSPSQPRL--SLTQAGRPRPTSQGRSHSSSDPYTASS-RGMLPTALQ 1069
Query: 271 FRDEDFYSILSLNSRRESDDTEEETQSEECLWVGVRSPCSPSHHKRSRFGGTSTPQAKNK 330
+DED + D TE E Q +P+H R++ S P+ +
Sbjct: 1070 NQDED------AQGSYDDDSTEVEAQDVR----------APAHAARAKEAAASLPKHQQV 1113
Query: 331 NFEENA------ENCRGHSSRRSEPSHGSLRISNAMEPATERPSAGQRLSQDP-GLPDRE 383
A + RGH++ + PS S A P+ P + S+ P ++
Sbjct: 1114 ESPTGAGAGGDHRSQRGHAASPARPSRPGGPQSRARVPSRAAPGKSEPPSKRPLSSKSQQ 1173
Query: 384 SATEKD---------RGGSENAKKSPL-SWDTKSEPR 410
S + +D +GG E+ S + W + S PR
Sbjct: 1174 SVSAEDDEEEDAGFFKGGKEDLLSSSVPKWPSSSTPR 1210
Score = 32.0 bits (71), Expect = 2.4
Identities = 57/219 (26%), Positives = 89/219 (40%), Gaps = 40/219 (18%)
Query: 203 LVPSSQPMTENAPDRAKKGDPSAPSQSELHPALSQAFQGKNSPQVLSEFSGPPLTPTTVG 262
L PSS P + P RA P PS S+ HP LS G E PL T V
Sbjct: 843 LQPSSSPQS-TVPSRAH---PRVPSHSDSHPKLSSGIHG-------DEEDEKPLPATVVN 891
Query: 263 GPRKASFRFRDEDFYSILSLNSRRESDDTEEETQSEECLWVGVRSPCSPSHHKRSRFGGT 322
+S R + L + +R + +E E +S + +H + G
Sbjct: 892 DHVPSSSRQPISRGWEDLRRSPQRGASLHRKEPIPE-----NPKSTGADTHPQ----GKY 942
Query: 323 STPQAKNKNFEENAE-NCRGHSSRRSEPSHGSLRISNAMEPAT---ERPSAGQRLSQDPG 378
S+ +K ++ +++ + + GHS +++P S A PA + PS +R++ PG
Sbjct: 943 SSLASKAQDVQQSTDADTEGHSP-KAQPGSTDRHASPARPPAARSQQHPSVPRRMT--PG 999
Query: 379 -----LPDRESATEKDRGG--SENAKKSPLSWDTKSEPR 410
P AT + G S +A +SP S+PR
Sbjct: 1000 RAPQQQPPPPVATSQHHPGPQSRDAGRSP------SQPR 1032
>gi|89001107 dentin sialophosphoprotein preproprotein [Homo sapiens]
Length = 1301
Score = 43.5 bits (101), Expect = 8e-04
Identities = 95/452 (21%), Positives = 158/452 (34%), Gaps = 28/452 (6%)
Query: 206 SSQPMTENAPDRAKKGDPSAPSQSELHPALSQAFQGKNSPQVLSEFSGPPLTPTTVGGPR 265
SS + N+ D + D S S+S S + +S S S + ++
Sbjct: 678 SSSSDSSNSSDSSDSSDSSNSSESSDSSDSSDSDSSDSSDSSNSNSSDSDSSNSSDSSDS 737
Query: 266 KASFRFRDEDFYSILSLNSRRESDDTEEETQSEECLWVGVRSPCSPSHHKRSRFGGTSTP 325
S D S S +S +S D+ + S + S S S + +
Sbjct: 738 SNSSDSSDSSDSSNSSDSS--DSSDSSNSSDSSDSSDSSDSSDSSNSSDSNDSSNSSDSS 795
Query: 326 QAKNKNFEENAENCRGHSSRRSEPSHGSLRISNAMEPATERPSAGQRLSQDPGLPDRESA 385
+ N + N+ + S S S SN+ + + S+ S D D +
Sbjct: 796 DSSNSSDSSNSSDSSDSSDSSDSDSSNSSDSSNSSDSSDSSNSSDSSDSSDSS--DGSDS 853
Query: 386 TEKDRGGSENAKKSPLSWDTKSEPRQEVGVNAENVWSDCISVEHRPGTHDSEGYWKDYLN 445
+R S N+ S S D+ + SD + + DS +
Sbjct: 854 DSSNRSDSSNSSDSSDSSDSSNSSDSSDS-------SDSNESSNSSDSSDSSNSSDSDSS 906
Query: 446 SSQNSLDYFISGRPISPRSSVNSSYNPPASFMHSALRDDIPVDLSMSSTSVHSSDSEGNS 505
S NS D S S NSS N +S ++ D S SS S +SSDS +S
Sbjct: 907 DSSNSSDSSDSSNSSDSSESSNSSDNSNSSDSSNSSDSSDSSDSSNSSDSSNSSDSSNSS 966
Query: 506 GFHVCQPLSPIRNRTPFASAENHNYFPVNSAHEFAVREAEDTTLTSQPQGAPLYTDLLLN 565
S N + + + N + +S+ ++ D++ +S + +D +
Sbjct: 967 D-------SSDSNSSDSSDSSNSS----DSSDSSDSSDSSDSSDSSNSSDSSDSSD--SS 1013
Query: 566 PQGNLSLVDSSSSSPSRMNSEGHLHVSGSLQENTPFTFFAVSHFPNQNDNGSRMAASGFT 625
N S DSS+SS S NS S S + S N +D+ +S +
Sbjct: 1014 DSSNSS--DSSNSSDS-SNSSDSSDSSDSSDSSDSSDSSDSSDSSNSSDSSDSSDSSDSS 1070
Query: 626 DEKETSKIKADPEKLKKLQESLLEEDSEEEGD 657
D ++S +D + +S DS + D
Sbjct: 1071 DSSDSSD-SSDSSESSDSSDSSNSSDSSDSSD 1101
Score = 38.5 bits (88), Expect = 0.025
Identities = 104/566 (18%), Positives = 186/566 (32%), Gaps = 32/566 (5%)
Query: 56 SFERSRFSSRSSSKQSSSEEDALTEPRSSIKISAFKCDSKLPAIDQTSVKQKHKSTMTVR 115
S + S S S S SS+ D+ SS + + + + S+ +
Sbjct: 746 SSDSSNSSDSSDSSDSSNSSDSSDSSDSSDSSDSSNSSDSNDSSNSSDSSDSSNSSDSSN 805
Query: 116 KAEKVDPSEPSPADQAPMVLLRKRKPNLRRFTVSPESHSPRASGDRSRQKQQWPAKVPVP 175
++ D S+ S +D + N + S +S S D S
Sbjct: 806 SSDSSDSSDSSDSDSS----------NSSDSSNSSDSSDSSNSSDSSDSSDS-------S 848
Query: 176 RGADQVVQQEGLMCNTKLKRPNQERRNLVPSSQPMTENAPDRAKKGDPSAPSQSELHPAL 235
G+D N+ + + N SS N + + D S S S +
Sbjct: 849 DGSDSDSSNRSDSSNSSDSSDSSDSSNSSDSSDSSDSN--ESSNSSDSSDSSNSSDSDSS 906
Query: 236 SQAFQGKNSPQVLSEFSGPPLTPTTVGGPRKASFRFRDEDFYSILSLNSRRESDDTEEET 295
+ +S S S + +S D + + S D+ +
Sbjct: 907 DSSNSSDSSDSSNSSDSSESSNSSDNSNSSDSSNSSDSSDSSDSSNSSDSSNSSDSSNSS 966
Query: 296 QSEECLWVGVRSPCSPSHHKRSRFGGTSTPQAKNKNFEENAENCRGHSSRRSEPSHGSLR 355
S + + S S S+ + + N +++++ S S S S
Sbjct: 967 DSSDSNSSDSSDSSNSSDSSDSSDSSDSSDSSDSSNSSDSSDSSDSSDSSNSSDSSNSSD 1026
Query: 356 ISNAMEPATERPSAGQRLSQDPG--LPDRESATEKDRGGSENAKKSPLSWDTKSEPRQEV 413
SN+ + + S+ S D S+ D S ++ S S D+
Sbjct: 1027 SSNSSDSSDSSDSSDSSDSSDSSDSSDSSNSSDSSDSSDSSDSSDSSDSSDSSDSSESSD 1086
Query: 414 GVNAENVWSDCISVEHRPGTHDSEGYWKDYLNSSQNSLDYFISGRPISPRSSVNSSYNPP 473
++ N S + + S+ + S NS D S S NSS +
Sbjct: 1087 SSDSSNSSDSSDSSDSSDSSDSSDSSDSSDSSDSSNSSDSSDSSDSSDSSDSSNSSDSSD 1146
Query: 474 ASFMHSALRDDIPVDLSMSSTSVHSSDSEGNSGFHVCQPLSPIRNRTPFASAENHNYFPV 533
+S + D S SS S SSDS +S S + + + + + +
Sbjct: 1147 SSESSDSSDSSDSSDSSDSSDSSDSSDSSDSSNSSDSSDSSDSSDSSDSSDSSDSS---- 1202
Query: 534 NSAHEFAVREAEDTTLTSQPQGAPLYTDLLLNPQGNLS--LVDSSSSSPSRMNSEGHLHV 591
+S+ ++ D++ +S + +D + + S DSS+SS S +S+
Sbjct: 1203 DSSDSSDSSDSSDSSDSSDSSDSSDSSDSNESSDSSDSSDSSDSSNSSDSSDSSDSSDST 1262
Query: 592 SGSLQENTPFTFFAVSHFPNQNDNGS 617
S S E+ + S N N+NGS
Sbjct: 1263 SDSNDESD-----SQSKSGNGNNNGS 1283
Score = 30.8 bits (68), Expect = 5.3
Identities = 72/375 (19%), Positives = 134/375 (35%), Gaps = 62/375 (16%)
Query: 283 NSRRESDDTEEETQSEECLWVGVRSPCSPSHHKRSRFGGTSTPQAKNKNFEENAENCRGH 342
+S +S D+ + S + S S S +S + + + + + +++++
Sbjct: 590 SSDSDSSDSSNSSDSSDSSDSSDSSDSSDSSDSKSDSSKSESDSSDSDSKSDSSDSNSSD 649
Query: 343 SSRRSEPSHGSLRISNAMEPATERPSAGQRLSQDPGLPDRESATEKDRGGSENAKKSPLS 402
SS S+ S S SN+ + + S+ S D S+ D S N+ +S S
Sbjct: 650 SSDNSDSSDSS-NSSNSSDSSDSSDSSDSSSSSDSS----NSSDSSDSSDSSNSSESSDS 704
Query: 403 WDTKSEPRQEVGVNAENVWSDCISVEHRPGTHDSEGYWKDYLNSSQNSLDYFISGRPISP 462
D+ + ++ + SD D NSS +S
Sbjct: 705 SDSSDSDSSDSSDSSNSNSSD-----------------SDSSNSSDSS------------ 735
Query: 463 RSSVNSSYNPPASFMHSALRDDIPVDLSMSSTSVHSSDSEGNSGFHVCQPLSPIRNRTPF 522
S NSS + +S ++ D S SS S SSDS +S + N +
Sbjct: 736 -DSSNSSDSSDSSDSSNSSDSSDSSDSSNSSDSSDSSDSSDSSDSSNSSDSNDSSNSSDS 794
Query: 523 ASAENHNYFPVNSAHEFAVREAEDTTLTSQPQGAPLYTDLLLNPQGNLSLVDSSSSSPSR 582
+ + NS+ ++ D++ +S + N + + DSS SS S
Sbjct: 795 SDSS-------NSSDSSNSSDSSDSSDSSDSDSS--------NSSDSSNSSDSSDSSNSS 839
Query: 583 MNSEGHLHVSGSLQENTPFTFFAVSHFPNQNDNGSRMAASGFTDEKETSKIKADPEKLKK 642
+S+ GS +++ N++D+ + +S +D +S +D +
Sbjct: 840 DSSDSSDSSDGSDSDSS-----------NRSDSSNSSDSSDSSDSSNSSD-SSDSSDSNE 887
Query: 643 LQESLLEEDSEEEGD 657
S DS D
Sbjct: 888 SSNSSDSSDSSNSSD 902
>gi|57977325 membrane-associated ring finger (C3HC4) 4 [Homo
sapiens]
Length = 410
Score = 43.5 bits (101), Expect = 8e-04
Identities = 24/64 (37%), Positives = 30/64 (46%), Gaps = 10/64 (15%)
Query: 651 DSEEEGDLCRICQIAGGSPSNPLLEPCGCVGSLQFVHQECLKKWLKVKITSGADLGAVKT 710
DS LCRIC G LL PC C GS++ HQ CL KW+ + +
Sbjct: 155 DSGMRTPLCRIC--FQGPEQGELLSPCRCDGSVKCTHQPCLIKWISER--------GCWS 204
Query: 711 CEMC 714
CE+C
Sbjct: 205 CELC 208
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 42.4 bits (98), Expect = 0.002
Identities = 81/349 (23%), Positives = 119/349 (34%), Gaps = 32/349 (9%)
Query: 65 RSSSKQSSSEEDALTEPRSSIKISAFKCDSKLPAIDQTSVKQKHKSTMTVRKAEKVDPSE 124
RS S S + P+ S D K A + + S+ + P E
Sbjct: 1496 RSRSPSSPELNNKCLTPQRERSGSESSVDQKTVARTPLGQRSRSGSSQELDVKPSASPQE 1555
Query: 125 PSPADQAPMVLLRKRKP--NLRRFTVSPESHSPRASGDRSRQKQQWPAKVPVPRGADQVV 182
S +D +P + R P R SPE S R + P PR A +
Sbjct: 1556 RSESDSSPDSKAKTRTPLRQRSRSGSSPEVDSKSRLSPRRSRSGSSPEVKDKPRAAPRA- 1614
Query: 183 QQEGLMCNTKLKRPNQE---RRNLVPSSQPMTENAPDRAKKGDPSAPSQSELHPALSQAF 239
Q G + + K P RR+ SS +P+ G S S E P A
Sbjct: 1615 -QSGSDSSPEPKAPAPRALPRRSRSGSSSKGRGPSPE----GSSSTESSPEHPPKSRTAR 1669
Query: 240 QG-KNSPQVLSEFSGPPLTPTTVGGP---RKASFRFRDEDFYSILSLNSRRESDDTEEET 295
+G ++SP+ ++ PP ++ P RKA R S S +T T
Sbjct: 1670 RGSRSSPEPKTKSRTPPRRRSSRSSPELTRKARLSRRS---------RSASSSPETRSRT 1720
Query: 296 QSEECLWVGVRSPCSPSHHKRS--RFGGTSTPQAK--NKNFEENAENCRGHSSRRSEPSH 351
V SP P+ RS R S+P+ K ++ + RG RS
Sbjct: 1721 PPRHRRSPSVSSP-EPAEKSRSSRRRRSASSPRTKTTSRRGRSPSPKPRGLQRSRSRSRR 1779
Query: 352 GSLRISNAMEPATERPSAGQRLSQDPGLPDRESATEKDRGGSENAKKSP 400
R + + + S +R + R T + RGGS +SP
Sbjct: 1780 EKTRTTRRRDRSGSSQSTSRRRQRS---RSRSRVTRRRRGGSGYHSRSP 1825
Score = 38.1 bits (87), Expect = 0.033
Identities = 44/179 (24%), Positives = 66/179 (36%), Gaps = 30/179 (16%)
Query: 42 PNEKKRDQFWGQETSFERSRFSSRSSSKQSSSEEDALTEPRSSIKISAFKCDSKLPAIDQ 101
P E R+ + T +R R SS SSS SSS + + SS S+
Sbjct: 2586 PKEAVREGRPPEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSS------------ 2633
Query: 102 TSVKQKHKSTMTVRKAEKVDPSEPSPADQAPMVLLR----KRKPNLRRFTVSPESHSPRA 157
S+ + + S PSPA P L + K+ P R + SP
Sbjct: 2634 --------SSSSSSSSSSSSSSSPSPAKPGPQALPKPASPKKPPPGERRSRSPRKPIDSL 2685
Query: 158 SGDRSRQ----KQQWPAKVPVPRGADQVVQQEGLMCNTK--LKRPNQERRNLVPSSQPM 210
RS +++ P+ P PR + G + + P+ +RR PS +PM
Sbjct: 2686 RDSRSLSYSPVERRRPSPQPSPRDQQSSSSERGSRRGQRGDSRSPSHKRRRETPSPRPM 2744
Score = 36.2 bits (82), Expect = 0.12
Identities = 71/307 (23%), Positives = 114/307 (37%), Gaps = 43/307 (14%)
Query: 135 LLRKRKPNLRRFTVSPESHSPRASGDRSRQKQQWPAKVPVPRGADQVVQQEGLMCNT--- 191
L K+ LR +S+ +S D R+ ++ P P +V++ +
Sbjct: 127 LNEKKNERLRAAFGISDSYVDGSSFDPQRRAREAKQPAPEPPKPYSLVRESSSSRSPTPK 186
Query: 192 -KLKRPNQERRNLVPSSQPMTENAPDRAKKGDPSAPSQSELHPALSQAFQGKNSPQVLSE 250
K K+ ++R SS P E KK S S+S+ S + K +
Sbjct: 187 QKKKKKKKDRGRRSESSSPRRERKKSSKKKKHRSE-SESKKRKHRSPTPKSKRKSKDKKR 245
Query: 251 FSGPPLTPTTVGGPRKASFRFRDEDFYSILSLNSRRESDDTEEETQSEECLWVGVRSPCS 310
TP R+A + S + SR S + T + + RSP S
Sbjct: 246 KRSRSTTPAPKS--RRAHRSTSADSASSSDTSRSRSRSAAAKTHTTA-----LAGRSP-S 297
Query: 311 PSHHKR-------SRFGGTST-----PQAKNKN----FEENAENCRGHSSRRSEPSHGSL 354
P+ +R S G TST P+ K +E+ ++ + S+ R PS
Sbjct: 298 PASGRRGEGDAPFSEPGTTSTQRPSSPETATKQPSSPYEDKDKDKKEKSATRPSPSPE-- 355
Query: 355 RISNAMEPATERPSAGQR------------LSQDPGLPDRESATEKDRGGSENAKKSPLS 402
R S EP P +R LSQ+P P E++ +DR ++ +K P S
Sbjct: 356 RSSTGPEPPAPTPLLAERHGGSPQPLATTPLSQEPVNPPSEASPTRDRSPPKSPEKLPQS 415
Query: 403 WDTKSEP 409
++S P
Sbjct: 416 SSSESSP 422
Score = 35.8 bits (81), Expect = 0.16
Identities = 33/111 (29%), Positives = 48/111 (43%), Gaps = 8/111 (7%)
Query: 53 QETSFERSRFSSRSSSKQSSSEEDALTEPRSSIKISAFKCDSKLPAIDQTSVKQKHKSTM 112
Q RS SS SSS SSS + + SS S+ S LP + ++K+ T
Sbjct: 2525 QPAKERRSSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSSLPVQPEVALKRVPSPTP 2584
Query: 113 TVRKAEKVD-PSEPSPADQAPMVLLRKRKPNLRRFTVSPESHSPRASGDRS 162
++A + P EP+PA RKR+ + + S S S +S S
Sbjct: 2585 APKEAVREGRPPEPTPAK-------RKRRSSSSSSSSSSSSSSSSSSSSSS 2628
Score = 35.4 bits (80), Expect = 0.21
Identities = 63/287 (21%), Positives = 103/287 (35%), Gaps = 34/287 (11%)
Query: 55 TSFERSRFSSRSSSKQSSSEEDALTEPRSSIKISAFKCDSKLPAIDQTSVKQKHKSTMTV 114
T R R S S K S + SS ++ + S+ +S + K KS +++
Sbjct: 717 TPQRRGRSGSSSERKNKSRTSQRRSRSNSSPEMKKSRISSRRSR-SLSSPRSKAKSRLSL 775
Query: 115 RKAEKVDPSEPSPADQAPMVLLRKRKPNLRRFTVSPESHSPRASGDRSRQKQQWPAK--- 171
R++ P Q P R + + +P S +S +QK + P++
Sbjct: 776 RRSLSGSSPCPKQKSQTPPRRSRSGSSQPKAKSRTPPRRSRSSSSPPPKQKSKTPSRQSH 835
Query: 172 ---VPVPRGADQVVQQEGLMCNTKLKRPNQERRNLVPSSQPMTENAPD-RAKKGDPSAPS 227
P P+ ++G + P +++ P + E++PD K PS S
Sbjct: 836 SSSSPHPKVKSGTPPRQG-----SITSPQANEQSVTPQRRSCFESSPDPELKSRTPSRHS 890
Query: 228 QS-ELHPALSQAFQGKNSPQVLSEFSGPPLTPTTVGGPRKASFRFRDEDFYSILSLNSRR 286
S P + + + SP S S P + PR+ S S SR
Sbjct: 891 CSGSSPPRVKSSTPPRQSP---SRSSSPQPKVKAIISPRQRSHS------GSSSPSPSRV 941
Query: 287 ESDDTEEETQSEECLWVGVRSPCSPSHHK---RSRFGGTSTPQAKNK 330
S T ++S SPCS + R G+S+P K K
Sbjct: 942 TSRTTPRRSRSV--------SPCSNVESRLLPRYSHSGSSSPDTKVK 980
>gi|157694494 MYB binding protein 1a isoform 1 [Homo sapiens]
Length = 1332
Score = 42.0 bits (97), Expect = 0.002
Identities = 42/154 (27%), Positives = 64/154 (41%), Gaps = 28/154 (18%)
Query: 116 KAEKVDPSEPSPADQAPMVLLRKRKPNLRRFTVSPESHSPRASGDRSRQKQQWPAKVPVP 175
K EK D E A Q+P+ RK+K L PE+ + R+K+
Sbjct: 1148 KLEKKDAKEIPSATQSPISKKRKKKGFL------PET--------KKRKKR--------- 1184
Query: 176 RGADQVVQQEGLMCNTKLKRP---NQERRNLVPSSQPMTENAPDRAKKGDPSAPSQSELH 232
+ D ++G T +P +++RN + P N K P AP++S
Sbjct: 1185 KSEDGTPAEDGTPAATGGSQPPSMGRKKRNRTKAKVPAQANGTPTTKSPAPGAPTRSPST 1244
Query: 233 PALSQAFQGKNSPQVLSEFSGPPLTPTTVGGPRK 266
PA S Q KN Q S+ +G P +PT G ++
Sbjct: 1245 PAKSPKLQKKN--QKPSQVNGAPGSPTEPAGQKQ 1276
>gi|157694492 MYB binding protein 1a isoform 2 [Homo sapiens]
Length = 1328
Score = 42.0 bits (97), Expect = 0.002
Identities = 42/154 (27%), Positives = 64/154 (41%), Gaps = 28/154 (18%)
Query: 116 KAEKVDPSEPSPADQAPMVLLRKRKPNLRRFTVSPESHSPRASGDRSRQKQQWPAKVPVP 175
K EK D E A Q+P+ RK+K L PE+ + R+K+
Sbjct: 1148 KLEKKDAKEIPSATQSPISKKRKKKGFL------PET--------KKRKKR--------- 1184
Query: 176 RGADQVVQQEGLMCNTKLKRP---NQERRNLVPSSQPMTENAPDRAKKGDPSAPSQSELH 232
+ D ++G T +P +++RN + P N K P AP++S
Sbjct: 1185 KSEDGTPAEDGTPAATGGSQPPSMGRKKRNRTKAKVPAQANGTPTTKSPAPGAPTRSPST 1244
Query: 233 PALSQAFQGKNSPQVLSEFSGPPLTPTTVGGPRK 266
PA S Q KN Q S+ +G P +PT G ++
Sbjct: 1245 PAKSPKLQKKN--QKPSQVNGAPGSPTEPAGQKQ 1276
>gi|224548936 hypothetical protein LOC100170229 [Homo sapiens]
Length = 715
Score = 40.0 bits (92), Expect = 0.009
Identities = 84/394 (21%), Positives = 143/394 (36%), Gaps = 42/394 (10%)
Query: 34 RRQEYRRDPNEKKRDQFWGQETSFERSRFSSRSSSKQSSSEEDALTEPRSSIKISAFKCD 93
+ Q R P + R W + S ERS SRSSSK+ + + PR S
Sbjct: 339 KSQNQSRTPR-RGRSHNWSRNPSKERSHSHSRSSSKE--RDHRGSSSPRKESGRSQSGSP 395
Query: 94 SKLPAIDQTSVKQKHKSTMTVRKAEKVDPSEPSPADQAPMVLLRKRKPNLRRFTVSPESH 153
+K ++ K + R K S + R R P R S
Sbjct: 396 NKQRDHSRSRSPNKARDRSRSRSPYKARDRSRSRSPNKARDCSRSRSPYKAR--DRSRSR 453
Query: 154 SPRASGDRSRQKQQWPAKVPVPRGADQVVQQEGLMCNTKLKRPNQE---RRNLVPSSQPM 210
SP + D SR + A+ R + +E +++L P++E RR+ PS +
Sbjct: 454 SPNKARDHSRSRSPNKAR---DRSRSRSPSKE--RDHSQLGSPSKERDHRRSRSPSKERQ 508
Query: 211 TENAPDRAKKGDPSAPSQSELHPALSQAFQGKNSPQVLSEFSGPPLTPTTVGGPRKASFR 270
+ +K+ D + P+ + + SP + S +P+ R++
Sbjct: 509 CRQSRSSSKERD----HRRSRSPSKERQRRQSRSPNKERDRS-QSRSPSEEREHRQSRSP 563
Query: 271 FRDEDFYSILSLNSRRESDDTEEETQSEECLWVGVRSPCSPSHHKRSRFGGTSTPQAKNK 330
++ D S + RE + + SEE RSP S + R R ++++
Sbjct: 564 SKERDRRRWRSPSKERER--RQSRSSSEERDHSRSRSPNKQSGYSRPRASSKEKAHSRSR 621
Query: 331 NFEENAENCRGH-SSRRSEPSHGSL-----------RISNAMEPATER----------PS 368
+ + + SS+ S+PS ++ R S+ + T PS
Sbjct: 622 TPSKEGNHSQSRTSSKESDPSQSTVPRSPDWKRSPTRTSSLSQNRTPSKTSSHSPSTFPS 681
Query: 369 AGQRLSQDPGLPDRESATEKDRGGSENAKKSPLS 402
GQ LSQD D ++ G ++ S L+
Sbjct: 682 GGQTLSQDDSQADATTSKATLPGERSSSSSSKLA 715
>gi|4758172 dentin matrix acidic phosphoprotein 1 isoform 1
precursor [Homo sapiens]
Length = 513
Score = 40.0 bits (92), Expect = 0.009
Identities = 78/371 (21%), Positives = 131/371 (35%), Gaps = 53/371 (14%)
Query: 40 RDPNEKKRDQFWGQETSFERSRFSSRSSSKQSSSEEDALTEPRSSIKISAFKCDSKLPAI 99
+D E + E S + + S S+ + S +D +E R + DSK
Sbjct: 124 KDRQEGGNSRLGSDEDSDDTIQASEESAPQGQDSAQDTTSESRELDNED--RVDSKPEGG 181
Query: 100 DQTSVKQKHKSTMTVRKAEKVDPSEPSPADQAPMVL-----LRKRKPNLRRFTVSPESHS 154
D T + + + + + S D M +R + N R + +S
Sbjct: 182 DSTQESESEEHWVGGGSDGESSHGDGSELDDEGMQSDDPESIRSERGNSRMNSAGMKS-- 239
Query: 155 PRASGDRSRQKQQWPAKVPVPRGADQVVQQEGLMCNTKLKRPNQERRNLVPSSQPM---- 210
+ SG+ S Q + G Q+++ K + ++ R+ + + M
Sbjct: 240 -KESGENSEQANTQDS------GGSQLLEHPSRKIFRKSRISEEDDRSELDDNNTMEEVK 292
Query: 211 ---TENA---------PDRAKKGDPSAPSQSELHPALSQAFQGKNSP------------- 245
TEN+ P R KGD S+ L SQ G +S
Sbjct: 293 SDSTENSNSRDTGLSQPRRDSKGDSQEDSKENLSQEESQNVDGPSSESSQEANLSSQENS 352
Query: 246 -----QVLSEFSGPPLTPTTVGGPRKASFRFRDEDFYSILSLNSRRESDDTEEETQSEEC 300
+V+SE G PTT + +ED LS +S+ ES + + +++S E
Sbjct: 353 SESQEEVVSESRGDNPDPTTSYVEDQEDSDSSEEDSSHTLS-HSKSESREEQADSESSES 411
Query: 301 LWVGVRSPCSPSHHKRSRFGGTSTPQAKNKNFEENAENCRGHSSRRSEPSHGSLRISNAM 360
L SP SP S G + + ++ E + + S S+ S S SN+
Sbjct: 412 LNFSEESPESPEDENSSSQEGLQSHSSSAESQSEESHSEEDDSD--SQDSSRSKEDSNST 469
Query: 361 EPATERPSAGQ 371
E + GQ
Sbjct: 470 ESKSSSEEDGQ 480
>gi|121256621 dentin matrix acidic phosphoprotein 1 isoform 2
precursor [Homo sapiens]
Length = 497
Score = 40.0 bits (92), Expect = 0.009
Identities = 78/371 (21%), Positives = 131/371 (35%), Gaps = 53/371 (14%)
Query: 40 RDPNEKKRDQFWGQETSFERSRFSSRSSSKQSSSEEDALTEPRSSIKISAFKCDSKLPAI 99
+D E + E S + + S S+ + S +D +E R + DSK
Sbjct: 108 KDRQEGGNSRLGSDEDSDDTIQASEESAPQGQDSAQDTTSESRELDNED--RVDSKPEGG 165
Query: 100 DQTSVKQKHKSTMTVRKAEKVDPSEPSPADQAPMVL-----LRKRKPNLRRFTVSPESHS 154
D T + + + + + S D M +R + N R + +S
Sbjct: 166 DSTQESESEEHWVGGGSDGESSHGDGSELDDEGMQSDDPESIRSERGNSRMNSAGMKS-- 223
Query: 155 PRASGDRSRQKQQWPAKVPVPRGADQVVQQEGLMCNTKLKRPNQERRNLVPSSQPM---- 210
+ SG+ S Q + G Q+++ K + ++ R+ + + M
Sbjct: 224 -KESGENSEQANTQDS------GGSQLLEHPSRKIFRKSRISEEDDRSELDDNNTMEEVK 276
Query: 211 ---TENA---------PDRAKKGDPSAPSQSELHPALSQAFQGKNSP------------- 245
TEN+ P R KGD S+ L SQ G +S
Sbjct: 277 SDSTENSNSRDTGLSQPRRDSKGDSQEDSKENLSQEESQNVDGPSSESSQEANLSSQENS 336
Query: 246 -----QVLSEFSGPPLTPTTVGGPRKASFRFRDEDFYSILSLNSRRESDDTEEETQSEEC 300
+V+SE G PTT + +ED LS +S+ ES + + +++S E
Sbjct: 337 SESQEEVVSESRGDNPDPTTSYVEDQEDSDSSEEDSSHTLS-HSKSESREEQADSESSES 395
Query: 301 LWVGVRSPCSPSHHKRSRFGGTSTPQAKNKNFEENAENCRGHSSRRSEPSHGSLRISNAM 360
L SP SP S G + + ++ E + + S S+ S S SN+
Sbjct: 396 LNFSEESPESPEDENSSSQEGLQSHSSSAESQSEESHSEEDDSD--SQDSSRSKEDSNST 453
Query: 361 EPATERPSAGQ 371
E + GQ
Sbjct: 454 ESKSSSEEDGQ 464
>gi|207113162 Treacher Collins-Franceschetti syndrome 1 isoform e
[Homo sapiens]
Length = 1451
Score = 40.0 bits (92), Expect = 0.009
Identities = 96/400 (24%), Positives = 143/400 (35%), Gaps = 81/400 (20%)
Query: 64 SRSSSKQSSSEEDALTEPRSSIKISAFKCDSKLPAIDQTSVKQKHKSTMTVRKAEKVDPS 123
S SS + S SEE+A RS +K S K+ + S K T K +
Sbjct: 270 SESSEEGSESEEEAPAGTRSQVKAS-----EKILQVRAASAPAKG----TPGKG-----A 315
Query: 124 EPSPADQAPMVLLRKRKPNLRRFTVSPESHSPRASGDRSRQKQQWPA-KVPVPRGADQVV 182
P+P +A V + + PE S +S + S +++ PA K + A
Sbjct: 316 TPAPPGKAGAVASQTKAGK-------PEEDSESSSEESSDSEEETPAAKALLQAKASGKT 368
Query: 183 QQEGLMCNTKLKRPNQERRNLVPSSQPMTENAPDRAKKGDPSAPSQSELHP------ALS 236
Q G + P R+ P+ T A +A+ G SQS A +
Sbjct: 369 SQVGAASAPAKESP---RKGAAPAPPGKTGPAVAKAQAGKREEDSQSSSEESDSEEEAPA 425
Query: 237 QAFQGKNSPQVL--------SEFSGPPLTPTTVGGPRKASFRF--RDEDFYSILSLNSRR 286
QA +PQV S G P GP A + ++ED S +S
Sbjct: 426 QAKPSGKAPQVRAASAPAKESPRKGAAPAPPRKTGPAAAQVQVGKQEED-----SRSSSE 480
Query: 287 ESDDTEEETQSEECLWVGVRSPCSPSHHKRSRFG----------------GTSTPQAKNK 330
ESD E + V SP S G G +TP A+
Sbjct: 481 ESDSDREALAAMNAAQVKPLGK-SPQVKPASTMGMGPLGKGAGPVPPGKVGPATPSAQVG 539
Query: 331 NFEENAENCRGHSSRRSEPSHGSLRISNAMEPATERPSAGQRLSQDP------GLPDR-- 382
+EE++E+ SS S+ + A+ PA E+ S G L P G P +
Sbjct: 540 KWEEDSESSSEESSDSSDG-----EVPTAVAPAQEK-SLGNILQAKPTSSPAKGPPQKAG 593
Query: 383 ----ESATEKDRGGSENAKKSPLSWDTKSEPRQEVGVNAE 418
+ EK SE++++S S D++ P A+
Sbjct: 594 PVAVQVKAEKPMDNSESSEESSDSADSEEAPAAMTAAQAK 633
Score = 30.0 bits (66), Expect = 9.0
Identities = 59/252 (23%), Positives = 91/252 (36%), Gaps = 45/252 (17%)
Query: 66 SSSKQSSSEEDALTEPRSSIKISAFKCDSKLPAIDQTSVKQKHKSTMTVRKAEKVDPSEP 125
S+S+ S EE+A E + A S L A +S+K+K K+ KA K S P
Sbjct: 83 STSESSEEEEEAEAETAKATPRLASTNSSVLGADLPSSMKEKAKA--ETEKAGKTGNSMP 140
Query: 126 SPADQAPMVLLRKRKPNLRRFTVSPESHSPRASGDRSRQKQQWPAKVPVPRGADQVVQQE 185
PA + L K SPR S + S + ++
Sbjct: 141 HPATGKTVANLLSGK-------------SPRKSAEPSANTTL----------VSETEEEG 177
Query: 186 GLMCNTKLKRPNQERRNLVPSSQPMTENAPDRAK-KGDPSA-PSQ---SELHPALSQAFQ 240
+ +P SS T ++ D +G PS P+Q S + S A +
Sbjct: 178 SVPAFGAAAKPGMVSAGQADSSSEDTSSSSDETDVEGKPSVKPAQVKASSVSTKESPARK 237
Query: 241 GKNSPQVLSEFSGPPLTPTTVGGPRKASFRFRDEDFYSILSLNSRRESDDTEEETQSEEC 300
+P + + +TP GG + R + + ES+ +EE ++SEE
Sbjct: 238 AAPAPGKVGD-----VTPQVKGGALPPAKRAKKPE----------EESESSEEGSESEEE 282
Query: 301 LWVGVRSPCSPS 312
G RS S
Sbjct: 283 APAGTRSQVKAS 294
>gi|207113160 Treacher Collins-Franceschetti syndrome 1 isoform d
[Homo sapiens]
Length = 1488
Score = 40.0 bits (92), Expect = 0.009
Identities = 96/400 (24%), Positives = 143/400 (35%), Gaps = 81/400 (20%)
Query: 64 SRSSSKQSSSEEDALTEPRSSIKISAFKCDSKLPAIDQTSVKQKHKSTMTVRKAEKVDPS 123
S SS + S SEE+A RS +K S K+ + S K T K +
Sbjct: 270 SESSEEGSESEEEAPAGTRSQVKAS-----EKILQVRAASAPAKG----TPGKG-----A 315
Query: 124 EPSPADQAPMVLLRKRKPNLRRFTVSPESHSPRASGDRSRQKQQWPA-KVPVPRGADQVV 182
P+P +A V + + PE S +S + S +++ PA K + A
Sbjct: 316 TPAPPGKAGAVASQTKAGK-------PEEDSESSSEESSDSEEETPAAKALLQAKASGKT 368
Query: 183 QQEGLMCNTKLKRPNQERRNLVPSSQPMTENAPDRAKKGDPSAPSQSELHP------ALS 236
Q G + P R+ P+ T A +A+ G SQS A +
Sbjct: 369 SQVGAASAPAKESP---RKGAAPAPPGKTGPAVAKAQAGKREEDSQSSSEESDSEEEAPA 425
Query: 237 QAFQGKNSPQVL--------SEFSGPPLTPTTVGGPRKASFRF--RDEDFYSILSLNSRR 286
QA +PQV S G P GP A + ++ED S +S
Sbjct: 426 QAKPSGKAPQVRAASAPAKESPRKGAAPAPPRKTGPAAAQVQVGKQEED-----SRSSSE 480
Query: 287 ESDDTEEETQSEECLWVGVRSPCSPSHHKRSRFG----------------GTSTPQAKNK 330
ESD E + V SP S G G +TP A+
Sbjct: 481 ESDSDREALAAMNAAQVKPLGK-SPQVKPASTMGMGPLGKGAGPVPPGKVGPATPSAQVG 539
Query: 331 NFEENAENCRGHSSRRSEPSHGSLRISNAMEPATERPSAGQRLSQDP------GLPDR-- 382
+EE++E+ SS S+ + A+ PA E+ S G L P G P +
Sbjct: 540 KWEEDSESSSEESSDSSDG-----EVPTAVAPAQEK-SLGNILQAKPTSSPAKGPPQKAG 593
Query: 383 ----ESATEKDRGGSENAKKSPLSWDTKSEPRQEVGVNAE 418
+ EK SE++++S S D++ P A+
Sbjct: 594 PVAVQVKAEKPMDNSESSEESSDSADSEEAPAAMTAAQAK 633
Score = 30.0 bits (66), Expect = 9.0
Identities = 59/252 (23%), Positives = 91/252 (36%), Gaps = 45/252 (17%)
Query: 66 SSSKQSSSEEDALTEPRSSIKISAFKCDSKLPAIDQTSVKQKHKSTMTVRKAEKVDPSEP 125
S+S+ S EE+A E + A S L A +S+K+K K+ KA K S P
Sbjct: 83 STSESSEEEEEAEAETAKATPRLASTNSSVLGADLPSSMKEKAKA--ETEKAGKTGNSMP 140
Query: 126 SPADQAPMVLLRKRKPNLRRFTVSPESHSPRASGDRSRQKQQWPAKVPVPRGADQVVQQE 185
PA + L K SPR S + S + ++
Sbjct: 141 HPATGKTVANLLSGK-------------SPRKSAEPSANTTL----------VSETEEEG 177
Query: 186 GLMCNTKLKRPNQERRNLVPSSQPMTENAPDRAK-KGDPSA-PSQ---SELHPALSQAFQ 240
+ +P SS T ++ D +G PS P+Q S + S A +
Sbjct: 178 SVPAFGAAAKPGMVSAGQADSSSEDTSSSSDETDVEGKPSVKPAQVKASSVSTKESPARK 237
Query: 241 GKNSPQVLSEFSGPPLTPTTVGGPRKASFRFRDEDFYSILSLNSRRESDDTEEETQSEEC 300
+P + + +TP GG + R + + ES+ +EE ++SEE
Sbjct: 238 AAPAPGKVGD-----VTPQVKGGALPPAKRAKKPE----------EESESSEEGSESEEE 282
Query: 301 LWVGVRSPCSPS 312
G RS S
Sbjct: 283 APAGTRSQVKAS 294
>gi|57164977 Treacher Collins-Franceschetti syndrome 1 isoform a
[Homo sapiens]
Length = 1450
Score = 40.0 bits (92), Expect = 0.009
Identities = 96/400 (24%), Positives = 143/400 (35%), Gaps = 81/400 (20%)
Query: 64 SRSSSKQSSSEEDALTEPRSSIKISAFKCDSKLPAIDQTSVKQKHKSTMTVRKAEKVDPS 123
S SS + S SEE+A RS +K S K+ + S K T K +
Sbjct: 270 SESSEEGSESEEEAPAGTRSQVKAS-----EKILQVRAASAPAKG----TPGKG-----A 315
Query: 124 EPSPADQAPMVLLRKRKPNLRRFTVSPESHSPRASGDRSRQKQQWPA-KVPVPRGADQVV 182
P+P +A V + + PE S +S + S +++ PA K + A
Sbjct: 316 TPAPPGKAGAVASQTKAGK-------PEEDSESSSEESSDSEEETPAAKALLQAKASGKT 368
Query: 183 QQEGLMCNTKLKRPNQERRNLVPSSQPMTENAPDRAKKGDPSAPSQSELHP------ALS 236
Q G + P R+ P+ T A +A+ G SQS A +
Sbjct: 369 SQVGAASAPAKESP---RKGAAPAPPGKTGPAVAKAQAGKREEDSQSSSEESDSEEEAPA 425
Query: 237 QAFQGKNSPQVL--------SEFSGPPLTPTTVGGPRKASFRF--RDEDFYSILSLNSRR 286
QA +PQV S G P GP A + ++ED S +S
Sbjct: 426 QAKPSGKAPQVRAASAPAKESPRKGAAPAPPRKTGPAAAQVQVGKQEED-----SRSSSE 480
Query: 287 ESDDTEEETQSEECLWVGVRSPCSPSHHKRSRFG----------------GTSTPQAKNK 330
ESD E + V SP S G G +TP A+
Sbjct: 481 ESDSDREALAAMNAAQVKPLGK-SPQVKPASTMGMGPLGKGAGPVPPGKVGPATPSAQVG 539
Query: 331 NFEENAENCRGHSSRRSEPSHGSLRISNAMEPATERPSAGQRLSQDP------GLPDR-- 382
+EE++E+ SS S+ + A+ PA E+ S G L P G P +
Sbjct: 540 KWEEDSESSSEESSDSSDG-----EVPTAVAPAQEK-SLGNILQAKPTSSPAKGPPQKAG 593
Query: 383 ----ESATEKDRGGSENAKKSPLSWDTKSEPRQEVGVNAE 418
+ EK SE++++S S D++ P A+
Sbjct: 594 PVAVQVKAEKPMDNSESSEESSDSADSEEAPAAMTAAQAK 633
Score = 30.0 bits (66), Expect = 9.0
Identities = 59/252 (23%), Positives = 91/252 (36%), Gaps = 45/252 (17%)
Query: 66 SSSKQSSSEEDALTEPRSSIKISAFKCDSKLPAIDQTSVKQKHKSTMTVRKAEKVDPSEP 125
S+S+ S EE+A E + A S L A +S+K+K K+ KA K S P
Sbjct: 83 STSESSEEEEEAEAETAKATPRLASTNSSVLGADLPSSMKEKAKA--ETEKAGKTGNSMP 140
Query: 126 SPADQAPMVLLRKRKPNLRRFTVSPESHSPRASGDRSRQKQQWPAKVPVPRGADQVVQQE 185
PA + L K SPR S + S + ++
Sbjct: 141 HPATGKTVANLLSGK-------------SPRKSAEPSANTTL----------VSETEEEG 177
Query: 186 GLMCNTKLKRPNQERRNLVPSSQPMTENAPDRAK-KGDPSA-PSQ---SELHPALSQAFQ 240
+ +P SS T ++ D +G PS P+Q S + S A +
Sbjct: 178 SVPAFGAAAKPGMVSAGQADSSSEDTSSSSDETDVEGKPSVKPAQVKASSVSTKESPARK 237
Query: 241 GKNSPQVLSEFSGPPLTPTTVGGPRKASFRFRDEDFYSILSLNSRRESDDTEEETQSEEC 300
+P + + +TP GG + R + + ES+ +EE ++SEE
Sbjct: 238 AAPAPGKVGD-----VTPQVKGGALPPAKRAKKPE----------EESESSEEGSESEEE 282
Query: 301 LWVGVRSPCSPS 312
G RS S
Sbjct: 283 APAGTRSQVKAS 294
>gi|57164979 Treacher Collins-Franceschetti syndrome 1 isoform c
[Homo sapiens]
Length = 958
Score = 40.0 bits (92), Expect = 0.009
Identities = 96/400 (24%), Positives = 143/400 (35%), Gaps = 81/400 (20%)
Query: 64 SRSSSKQSSSEEDALTEPRSSIKISAFKCDSKLPAIDQTSVKQKHKSTMTVRKAEKVDPS 123
S SS + S SEE+A RS +K S K+ + S K T K +
Sbjct: 270 SESSEEGSESEEEAPAGTRSQVKAS-----EKILQVRAASAPAKG----TPGKG-----A 315
Query: 124 EPSPADQAPMVLLRKRKPNLRRFTVSPESHSPRASGDRSRQKQQWPA-KVPVPRGADQVV 182
P+P +A V + + PE S +S + S +++ PA K + A
Sbjct: 316 TPAPPGKAGAVASQTKAGK-------PEEDSESSSEESSDSEEETPAAKALLQAKASGKT 368
Query: 183 QQEGLMCNTKLKRPNQERRNLVPSSQPMTENAPDRAKKGDPSAPSQSELHP------ALS 236
Q G + P R+ P+ T A +A+ G SQS A +
Sbjct: 369 SQVGAASAPAKESP---RKGAAPAPPGKTGPAVAKAQAGKREEDSQSSSEESDSEEEAPA 425
Query: 237 QAFQGKNSPQVL--------SEFSGPPLTPTTVGGPRKASFRF--RDEDFYSILSLNSRR 286
QA +PQV S G P GP A + ++ED S +S
Sbjct: 426 QAKPSGKAPQVRAASAPAKESPRKGAAPAPPRKTGPAAAQVQVGKQEED-----SRSSSE 480
Query: 287 ESDDTEEETQSEECLWVGVRSPCSPSHHKRSRFG----------------GTSTPQAKNK 330
ESD E + V SP S G G +TP A+
Sbjct: 481 ESDSDREALAAMNAAQVKPLGK-SPQVKPASTMGMGPLGKGAGPVPPGKVGPATPSAQVG 539
Query: 331 NFEENAENCRGHSSRRSEPSHGSLRISNAMEPATERPSAGQRLSQDP------GLPDR-- 382
+EE++E+ SS S+ + A+ PA E+ S G L P G P +
Sbjct: 540 KWEEDSESSSEESSDSSDG-----EVPTAVAPAQEK-SLGNILQAKPTSSPAKGPPQKAG 593
Query: 383 ----ESATEKDRGGSENAKKSPLSWDTKSEPRQEVGVNAE 418
+ EK SE++++S S D++ P A+
Sbjct: 594 PVAVQVKAEKPMDNSESSEESSDSADSEEAPAAMTAAQAK 633
Score = 30.0 bits (66), Expect = 9.0
Identities = 59/252 (23%), Positives = 91/252 (36%), Gaps = 45/252 (17%)
Query: 66 SSSKQSSSEEDALTEPRSSIKISAFKCDSKLPAIDQTSVKQKHKSTMTVRKAEKVDPSEP 125
S+S+ S EE+A E + A S L A +S+K+K K+ KA K S P
Sbjct: 83 STSESSEEEEEAEAETAKATPRLASTNSSVLGADLPSSMKEKAKA--ETEKAGKTGNSMP 140
Query: 126 SPADQAPMVLLRKRKPNLRRFTVSPESHSPRASGDRSRQKQQWPAKVPVPRGADQVVQQE 185
PA + L K SPR S + S + ++
Sbjct: 141 HPATGKTVANLLSGK-------------SPRKSAEPSANTTL----------VSETEEEG 177
Query: 186 GLMCNTKLKRPNQERRNLVPSSQPMTENAPDRAK-KGDPSA-PSQ---SELHPALSQAFQ 240
+ +P SS T ++ D +G PS P+Q S + S A +
Sbjct: 178 SVPAFGAAAKPGMVSAGQADSSSEDTSSSSDETDVEGKPSVKPAQVKASSVSTKESPARK 237
Query: 241 GKNSPQVLSEFSGPPLTPTTVGGPRKASFRFRDEDFYSILSLNSRRESDDTEEETQSEEC 300
+P + + +TP GG + R + + ES+ +EE ++SEE
Sbjct: 238 AAPAPGKVGD-----VTPQVKGGALPPAKRAKKPE----------EESESSEEGSESEEE 282
Query: 301 LWVGVRSPCSPS 312
G RS S
Sbjct: 283 APAGTRSQVKAS 294
>gi|40255016 membrane-associated RING-CH protein IX [Homo sapiens]
Length = 346
Score = 39.3 bits (90), Expect = 0.015
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 10/56 (17%)
Query: 659 CRICQIAGGSPSNPLLEPCGCVGSLQFVHQECLKKWLKVKITSGADLGAVKTCEMC 714
CRIC G LL PC C GS++ HQ CL +W+ + +CE+C
Sbjct: 110 CRIC--FQGPEQGELLSPCRCDGSVRCTHQPCLIRWISER--------GSWSCELC 155
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 39.3 bits (90), Expect = 0.015
Identities = 59/279 (21%), Positives = 102/279 (36%), Gaps = 46/279 (16%)
Query: 22 QHKVDSEYQACLRRQEYRRDPNEKKRDQFWGQETSFERS--RFSSRSSSKQSSSEEDALT 79
Q +++ E A +++Q+ +D +K+ + ++ RS R SRS S + S
Sbjct: 133 QRQIEQEKLASMKKQDEDKDKRDKEEKESSREKRERSRSPRRRKSRSPSPRRRSSPVRRE 192
Query: 80 EPRSSIKISAFKCDS-----------KLPAIDQTSVKQKHKST---------MTVRKAEK 119
RS + + S K P + + SVK K S + V K E
Sbjct: 193 RKRSHSRSPRHRTKSRSPSPAPEKKEKTPELPEPSVKVKEPSVQEATSTSDILKVPKPEP 252
Query: 120 V-DPSEPSPADQAPMVLLRKR---------KPNLRRFTVSPESHSPRASGDRSRQKQQWP 169
+ +P EPSP + +++ K R + SP PR RSR + P
Sbjct: 253 IPEPKEPSPEKNSKKEKEKEKTRPRSRSRSKSRSRTRSRSPSHTRPRRR-HRSRSRSYSP 311
Query: 170 AKVPVPRGADQVVQQEGLMCNTKLKRPNQERRNLVPS----------SQPMTENAPDRAK 219
+ P PR ++ ++ P + RR+ P S + ++ R++
Sbjct: 312 RRRPSPRRRPSPRRRTP---PRRMPPPPRHRRSRSPVRRRRRSSASLSGSSSSSSSSRSR 368
Query: 220 KGDPSAPSQSELHPALSQAFQGKNSPQVLSEFSGPPLTP 258
P ++ P ++ SP PP TP
Sbjct: 369 SPPKKPPKRTSSPPRKTRRLSPSASPPRRRHRPSPPATP 407
Score = 35.8 bits (81), Expect = 0.16
Identities = 41/210 (19%), Positives = 80/210 (38%), Gaps = 13/210 (6%)
Query: 22 QHKVDSEYQACLRRQEYRRDPNEKKRD--QFWGQETSFERSRFSSRSSSKQSSSEEDALT 79
+H+ S + RR RR P+ ++R + RSR R + S+S + +
Sbjct: 301 RHRSRSRSYSPRRRPSPRRRPSPRRRTPPRRMPPPPRHRRSRSPVRRRRRSSASLSGSSS 360
Query: 80 EPRSSIKISAFKCDSKLPAIDQTSVKQKHKSTMTVRKAEKVDP-SEPSPADQAPMVLLRK 138
SS S K K + ++ S R+ + P + P P + +
Sbjct: 361 SSSSSRSRSPPKKPPKRTSSPPRKTRRLSPSASPPRRRHRPSPPATPPPKTRHSPTPQQS 420
Query: 139 RKPNLRRFTVSPESHSPRASGDRSRQKQQWPAKVPVPRGAD----------QVVQQEGLM 188
+ R +VSP S + + + +K++ P+ P PR + ++ + +
Sbjct: 421 NRTRKSRVSVSPGRTSGKVTKHKGTEKRESPSPAPKPRKVELSESEEDKGGKMAAADSVQ 480
Query: 189 CNTKLKRPNQERRNLVPSSQPMTENAPDRA 218
+ +R NQ+ + SS + P R+
Sbjct: 481 QRRQYRRQNQQSSSDSGSSSSSEDERPKRS 510
Score = 35.0 bits (79), Expect = 0.28
Identities = 79/377 (20%), Positives = 132/377 (35%), Gaps = 67/377 (17%)
Query: 68 SKQSSSEEDALTEPRSSIKISAFKCDSKLPAIDQTSVKQKHKSTMTVRKAEKVDPSEPSP 127
++ S + + + +S + +S + K+ T ++ RK E + E
Sbjct: 411 TRHSPTPQQSNRTRKSRVSVSPGRTSGKVTKHKGTEKRESPSPAPKPRKVELSESEEDKG 470
Query: 128 ADQAPMVLLRKRKPNLRR---------FTVSPESHSPRAS----GDRSRQKQQWPAKV-- 172
A +++R+ R+ + S E P+ S G+ R+++ P++
Sbjct: 471 GKMAAADSVQQRRQYRRQNQQSSSDSGSSSSSEDERPKRSHVKNGEVGRRRRHSPSRSAS 530
Query: 173 PVPRGADQVVQQEGLMCNTKLKRPNQERRNLVPSSQP---MTENAPDRAKKGDP----SA 225
P PR + G + P + RR+ P+ P T P R + P +
Sbjct: 531 PSPRKRQKETSPRGRRRRSPSPPPTRRRRSPSPAPPPRRRRTPTPPPRRRTPSPPPRRRS 590
Query: 226 PSQSELHPALSQAFQGKNSPQVLSEFSGPPLTPTTVGGP-----RKASFRFRDEDFYSIL 280
PS P + + + SP + PP P P R+ S + S +
Sbjct: 591 PSPRRYSPPIQRRY--SPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSSPV 648
Query: 281 ------SLNSRRESDDTEEETQSEECLWVGVRSP-----CSPSHHKRSRFGGTSTPQAKN 329
SL+S+ + + E RSP SPS R+ +S P +
Sbjct: 649 TKRRSPSLSSKHRKGSSPSRSTRE------ARSPQPNKRHSPSPRPRAPQTSSSPPPVR- 701
Query: 330 KNFEENAENCRGHSS---RRSEPSHGS---LRISNAMEPATERPSAGQRLSQDPGLPDRE 383
RG SS RR PS + R+S EP + +A S P R
Sbjct: 702 ----------RGASSSPQRRQSPSPSTRPIRRVSRTPEPKKIKKAA----SPSPQSVRRV 747
Query: 384 SATEKDRGGSENAKKSP 400
S++ G E A K P
Sbjct: 748 SSSRSVSGSPEPAAKKP 764
>gi|239745153 PREDICTED: similar to Putative golgin subfamily A
member 6-like protein 6 [Homo sapiens]
Length = 655
Score = 38.5 bits (88), Expect = 0.025
Identities = 20/116 (17%), Positives = 48/116 (41%)
Query: 9 QKFFSDVQYLRDMQHKVDSEYQACLRRQEYRRDPNEKKRDQFWGQETSFERSRFSSRSSS 68
+K + + +R+ K+ + + R++E R+ EK++++ W QE R
Sbjct: 367 EKMWRQEEKIREQDEKIQEQEEEMWRQEEKIREQEEKRQEKMWRQEKKMREQDEKIREQE 426
Query: 69 KQSSSEEDALTEPRSSIKISAFKCDSKLPAIDQTSVKQKHKSTMTVRKAEKVDPSE 124
++ +E+ + E ++ K + + K + + R+ EK+ E
Sbjct: 427 EEMWRQEEKIRELEEMMQDQEEKLREVEEKMQEEEEKMQEQEEKIQRQEEKIQEQE 482
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.310 0.126 0.367
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,690,380
Number of Sequences: 37866
Number of extensions: 1779861
Number of successful extensions: 7202
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 200
Number of HSP's that attempted gapping in prelim test: 6773
Number of HSP's gapped (non-prelim): 590
length of query: 808
length of database: 18,247,518
effective HSP length: 110
effective length of query: 698
effective length of database: 14,082,258
effective search space: 9829416084
effective search space used: 9829416084
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.