Guide to the Human Genome
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Name: MARCH8 Sequence: fasta or formatted (291aa) NCBI GI: 50539412
Description:

cellular modulator of immune recognition isoform 6

Referenced in:

Ring Finger Proteins

Other entries for this name:
alt mRNA [291aa] cellular modulator of immune recognition isoform 8
alt mRNA [291aa] cellular modulator of immune recognition isoform 7
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.8         14           1
 C cysteine            5.5         16           2
 D aspartate           2.7          8           2
 E glutamate           7.6         22           2
 F phenylalanine       3.4         10           1
 G glycine             4.1         12           2
 H histidine           3.8         11           1
 I isoleucine          7.6         22           2
 K lysine              7.2         21           2
 L leucine             6.2         18           2
 M methionine          2.4          7           1
 N asparagine          2.7          8           1
 P proline             5.2         15           2
 Q glutamine           4.5         13           2
 R arginine            4.1         12           2
 S serine             10.7         31           2
 T threonine           6.9         20           1
 V valine              5.8         17           3
 W tryptophan          2.1          6           1
 Y tyrosine            2.7          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cellular modulator of immune recognition isoform 6 [... 
MARCH8                1.000   cellular modulator of immune recognition isoform 7 [...
MARCH8                1.000   cellular modulator of immune recognition isoform 8 [...
MARCH1                0.565   membrane-associated RING-CH protein I 
MARCH2                0.113   membrane-associated ring finger (C3HC4) 2 isoform 1 ...
MARCH2                0.113   membrane-associated ring finger (C3HC4) 2 isoform 1 ...
MARCH3                0.098   membrane-associated ring finger (C3HC4) 3 
MARCH6                0.091   membrane-associated ring finger (C3HC4) 6 
MARCH2                0.091   membrane-associated ring finger (C3HC4) 2 isoform 2 ...
MARCH11               0.082   membrane-associated ring finger (C3HC4) 11 
MARCH4                0.080   membrane-associated ring finger (C3HC4) 4 
MARCH9                0.080   membrane-associated RING-CH protein IX 
MARCH10               0.063   ring finger protein 190 
MARCH10               0.063   ring finger protein 190 
MARCH7                0.048   axotrophin 
MARCH5                0.034   membrane-associated ring finger (C3HC4) 5 
RNF181                0.034   ring finger protein 181 
RNF145                0.029   ring finger protein 145 
RNF139                0.026   ring finger protein 139 
PJA2                  0.022   praja 2, RING-H2 motif containing 
TTC3                  0.021   tetratricopeptide repeat domain 3 
TTC3                  0.021   tetratricopeptide repeat domain 3 
DZIP3                 0.019   DAZ interacting protein 3, zinc finger 
ZNRF4                 0.015   zinc and ring finger 4 
RNF7                  0.014   ring finger protein 7 isoform 1 
TRAIP                 0.014   TRAF interacting protein 
PJA1                  0.014   praja 1 isoform c 
PJA1                  0.014   praja 1 isoform b 
PJA1                  0.014   praja 1 isoform a 
RNF32                 0.014   ring finger protein 32 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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