Guide to the Human Genome
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Name: MARCH7 Sequence: fasta or formatted (704aa) NCBI GI: 12383066
Description:

axotrophin

Referenced in:

Ring Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.4         38           3
 C cysteine            1.6         11           1
 D aspartate           5.5         39           2
 E glutamate           7.1         50           4
 F phenylalanine       3.0         21           2
 G glycine             4.8         34           2
 H histidine           2.4         17           1
 I isoleucine          3.4         24           2
 K lysine              2.1         15           2
 L leucine             7.8         55           3
 M methionine          2.0         14           2
 N asparagine          5.7         40           1
 P proline             4.0         28           2
 Q glutamine           4.4         31           2
 R arginine            9.7         68           4
 S serine             20.0        141           3
 T threonine           5.7         40           2
 V valine              3.0         21           2
 W tryptophan          0.9          6           1
 Y tyrosine            1.6         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   axotrophin 
MARCH10               0.110   ring finger protein 190 
MARCH10               0.110   ring finger protein 190 
DSPP                  0.047   dentin sialophosphoprotein preproprotein 
FLG                   0.034   filaggrin 
MUC21                 0.029   mucin 21 
NKTR                  0.029   natural killer-tumor recognition sequence 
KIAA1853              0.026   KIAA1853 protein 
SFRS4                 0.022   splicing factor, arginine/serine-rich 4 
MARCH1                0.021   membrane-associated RING-CH protein I 
MARCH8                0.021   cellular modulator of immune recognition isoform 7 [...
MARCH8                0.021   cellular modulator of immune recognition isoform 6 [...
MARCH8                0.021   cellular modulator of immune recognition isoform 8 [...
SRRM2                 0.020   splicing coactivator subunit SRm300 
MARCH6                0.020   membrane-associated ring finger (C3HC4) 6 
MARCH2                0.018   membrane-associated ring finger (C3HC4) 2 isoform 2 ...
MARCH2                0.018   membrane-associated ring finger (C3HC4) 2 isoform 1 ...
MARCH2                0.018   membrane-associated ring finger (C3HC4) 2 isoform 1 ...
MARCH3                0.018   membrane-associated ring finger (C3HC4) 3 
LOC100170229          0.018   hypothetical protein LOC100170229 
MUC3A                 0.017   PREDICTED: mucin 3A, intestinal 
MARCH11               0.016   membrane-associated ring finger (C3HC4) 11 
C2orf16               0.015   hypothetical protein LOC84226 
NOLC1                 0.015   nucleolar and coiled-body phosphoprotein 1 
GPATCH8               0.015   G patch domain containing 8 
MARCH4                0.014   membrane-associated ring finger (C3HC4) 4 
SIPA1L1               0.013   signal-induced proliferation-associated 1 like 1 [Hom...
MUC4                  0.013   mucin 4 isoform a 
MUC3A                 0.013   PREDICTED: mucin 3A, cell surface associated, parti...
APC                   0.013   adenomatous polyposis coli 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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