Guide to the Human Genome
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Name: MARCH6 Sequence: fasta or formatted (910aa) NCBI GI: 33589846
Description:

membrane-associated ring finger (C3HC4) 6

Referenced in:

Ring Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.6         69           2
 C cysteine            2.5         23           1
 D aspartate           3.4         31           2
 E glutamate           5.6         51           5
 F phenylalanine       4.7         43           1
 G glycine             5.9         54           2
 H histidine           3.2         29           2
 I isoleucine          6.4         58           2
 K lysine              2.5         23           1
 L leucine            14.4        131           4
 M methionine          2.3         21           1
 N asparagine          3.7         34           3
 P proline             5.5         50           4
 Q glutamine           4.1         37           2
 R arginine            4.4         40           2
 S serine              4.5         41           2
 T threonine           4.1         37           2
 V valine              9.5         86           3
 W tryptophan          2.7         25           2
 Y tyrosine            3.0         27           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   membrane-associated ring finger (C3HC4) 6 
MARCH8                0.029   cellular modulator of immune recognition isoform 7 [...
MARCH8                0.029   cellular modulator of immune recognition isoform 6 [...
MARCH8                0.029   cellular modulator of immune recognition isoform 8 [...
MARCH1                0.028   membrane-associated RING-CH protein I 
MARCH3                0.021   membrane-associated ring finger (C3HC4) 3 
MARCH10               0.020   ring finger protein 190 
MARCH10               0.020   ring finger protein 190 
MARCH2                0.017   membrane-associated ring finger (C3HC4) 2 isoform 2 ...
MARCH2                0.017   membrane-associated ring finger (C3HC4) 2 isoform 1 ...
MARCH2                0.017   membrane-associated ring finger (C3HC4) 2 isoform 1 ...
MARCH11               0.015   membrane-associated ring finger (C3HC4) 11 
MARCH7                0.015   axotrophin 
MARCH4                0.014   membrane-associated ring finger (C3HC4) 4 
MARCH9                0.013   membrane-associated RING-CH protein IX 
EIF5B                 0.010   eukaryotic translation initiation factor 5B 
FAM9A                 0.009   family with sequence similarity 9, member A 
CHIC1                 0.009   cysteine-rich hydrophobic domain 1 
PTMA                  0.008   prothymosin, alpha isoform 1 
HUWE1                 0.008   HECT, UBA and WWE domain containing 1 
PTMA                  0.008   prothymosin, alpha isoform 2 
NSBP1                 0.007   nucleosomal binding protein 1 
NISCH                 0.007   nischarin 
ZBTB7C                0.007   zinc finger and BTB domain containing 7C 
LOC645490             0.007   PREDICTED: similar to hCG1991922 
CASZ1                 0.007   castor homolog 1, zinc finger isoform a 
BPTF                  0.007   bromodomain PHD finger transcription factor isoform ...
BPTF                  0.007   bromodomain PHD finger transcription factor isoform ...
CENPB                 0.007   centromere protein B 
NCL                   0.007   nucleolin 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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