Guide to the Human Genome
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Name: MAGIX Sequence: fasta or formatted (253aa) NCBI GI: 153070256
Description:

MAGI family member, X-linked isoform d

Referenced in:

PDZ Domain

Other entries for this name:
alt prot [258aa] MAGI family member, X-linked isoform c
alt prot [262aa] MAGI family member, X-linked isoform b
alt prot [334aa] MAGI family member, X-linked isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.9         30           3
 C cysteine            0.0          0           0
 D aspartate           4.7         12           1
 E glutamate           5.9         15           2
 F phenylalanine       0.0          0           0
 G glycine            10.3         26           2
 H histidine           3.2          8           1
 I isoleucine          2.4          6           1
 K lysine              2.4          6           2
 L leucine             8.7         22           2
 M methionine          0.8          2           1
 N asparagine          1.2          3           1
 P proline            11.5         29           2
 Q glutamine           3.6          9           1
 R arginine           12.6         32           3
 S serine              8.3         21           3
 T threonine           5.1         13           2
 V valine              7.1         18           1
 W tryptophan          0.4          1           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   MAGI family member, X-linked isoform d 
MAGIX                 0.987   MAGI family member, X-linked isoform c 
MAGIX                 0.651   MAGI family member, X-linked isoform b 
MAGIX                 0.622   MAGI family member, X-linked isoform a 
MAGI2                 0.058   membrane associated guanylate kinase, WW and PDZ dom...
MAGI1                 0.052   membrane associated guanylate kinase, WW and PDZ dom...
MAGI3                 0.052   membrane-associated guanylate kinase-related  3 iso...
MAGI3                 0.052   membrane-associated guanylate kinase-related  3 iso...
PDLIM2                0.050   PDZ and LIM domain 2 isoform 3 
PDLIM2                0.050   PDZ and LIM domain 2 isoform 1 
PDLIM2                0.050   PDZ and LIM domain 2 isoform 2 
PDLIM5                0.044   PDZ and LIM domain 5 isoform a 
PDLIM7                0.044   PDZ and LIM domain 7 isoform 2 
MAST2                 0.040   microtubule associated serine/threonine kinase 2 [H...
C2orf55               0.040   hypothetical protein LOC343990 
C6orf222              0.038   hypothetical protein LOC389384 
MAGI1                 0.035   membrane associated guanylate kinase, WW and PDZ dom...
MAGI1                 0.035   membrane associated guanylate kinase, WW and PDZ dom...
PTPN13                0.035   protein tyrosine phosphatase, non-receptor type 13 i...
PTPN13                0.035   protein tyrosine phosphatase, non-receptor type 13 i...
PTPN13                0.035   protein tyrosine phosphatase, non-receptor type 13 i...
PTPN13                0.035   protein tyrosine phosphatase, non-receptor type 13 is...
CUX1                  0.033   cut-like homeobox 1 isoform a 
SYN2                  0.031   synapsin II isoform IIa 
SNTA1                 0.031   acidic alpha 1 syntrophin 
PDLIM7                0.031   PDZ and LIM domain 7 isoform 4 
PDLIM7                0.031   PDZ and LIM domain 7 isoform 1 
LOC100289135          0.031   hypothetical protein LOC100289135 
LOC100293333          0.031   PREDICTED: similar to hCG1802898 
LOC100290603          0.031   PREDICTED: hypothetical protein XP_002346928 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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