Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 150378478
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|150378478 PR domain containing 8 [Homo sapiens]
(689 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|150378478 PR domain containing 8 [Homo sapiens] 1404 0.0
gi|150378439 PR domain containing 8 [Homo sapiens] 1404 0.0
gi|23308499 zinc finger protein 488 [Homo sapiens] 144 2e-34
gi|124107614 PR domain containing 13 [Homo sapiens] 77 5e-14
gi|33946327 nucleoporin 214kDa [Homo sapiens] 62 1e-09
gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 ... 59 2e-08
gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 ... 58 3e-08
gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3 ... 58 3e-08
gi|153792074 proline rich 12 [Homo sapiens] 58 3e-08
gi|154146199 sal-like 3 [Homo sapiens] 58 3e-08
gi|59806361 hypothetical protein LOC387104 [Homo sapiens] 57 7e-08
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 55 2e-07
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 55 2e-07
gi|89257348 homeo box HB9 [Homo sapiens] 55 2e-07
gi|71274144 AT hook, DNA binding motif, containing 1 [Homo sapiens] 55 2e-07
gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens] 54 4e-07
gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens] 54 4e-07
gi|147905620 PR domain containing 9 [Homo sapiens] 54 5e-07
gi|166795264 AE binding protein 2 isoform b [Homo sapiens] 54 5e-07
gi|166795262 AE binding protein 2 isoform a [Homo sapiens] 54 5e-07
gi|30179900 SRY (sex determining region Y)-box 1 [Homo sapiens] 53 8e-07
gi|148271100 PR domain containing 7 isoform 1 [Homo sapiens] 52 1e-06
gi|115334682 SNAP25-interacting protein [Homo sapiens] 52 1e-06
gi|24432032 zinc finger protein 503 [Homo sapiens] 52 2e-06
gi|13375636 PR domain containing 14 [Homo sapiens] 52 2e-06
gi|13994287 BTE-binding protein 4 [Homo sapiens] 51 3e-06
gi|20162554 Kruppel-like factor 14 [Homo sapiens] 51 3e-06
gi|48762934 alpha 2 type I collagen [Homo sapiens] 51 4e-06
gi|73476377 LBXCOR1 homolog [Homo sapiens] 51 4e-06
gi|41349474 PR domain containing 4 [Homo sapiens] 50 5e-06
>gi|150378478 PR domain containing 8 [Homo sapiens]
Length = 689
Score = 1404 bits (3635), Expect = 0.0
Identities = 689/689 (100%), Positives = 689/689 (100%)
Query: 1 MEDTGIQRGIWDGDAKAVQQCLTDIFTSVYTTCDIPENAIFGPCVLSHTSLYDSIAFIAL 60
MEDTGIQRGIWDGDAKAVQQCLTDIFTSVYTTCDIPENAIFGPCVLSHTSLYDSIAFIAL
Sbjct: 1 MEDTGIQRGIWDGDAKAVQQCLTDIFTSVYTTCDIPENAIFGPCVLSHTSLYDSIAFIAL 60
Query: 61 KSTDKRTVPYIFRVDTSAANGSSEGLMWLRLVQSARDKEEQNLEAYIKNGQLFYRSLRRI 120
KSTDKRTVPYIFRVDTSAANGSSEGLMWLRLVQSARDKEEQNLEAYIKNGQLFYRSLRRI
Sbjct: 61 KSTDKRTVPYIFRVDTSAANGSSEGLMWLRLVQSARDKEEQNLEAYIKNGQLFYRSLRRI 120
Query: 121 AKDEELLVWYGKELTELLLLCPSRSHNKMNGSSPYTCLECSQRFQFEFPYVAHLRFRCPK 180
AKDEELLVWYGKELTELLLLCPSRSHNKMNGSSPYTCLECSQRFQFEFPYVAHLRFRCPK
Sbjct: 121 AKDEELLVWYGKELTELLLLCPSRSHNKMNGSSPYTCLECSQRFQFEFPYVAHLRFRCPK 180
Query: 181 RLHSADISPQDEQGGGVGTKDHGGGGGGGKDQQQQQQEAPLGPGPKFCKAGPLHHYPSPS 240
RLHSADISPQDEQGGGVGTKDHGGGGGGGKDQQQQQQEAPLGPGPKFCKAGPLHHYPSPS
Sbjct: 181 RLHSADISPQDEQGGGVGTKDHGGGGGGGKDQQQQQQEAPLGPGPKFCKAGPLHHYPSPS 240
Query: 241 PESSNPSAAAGGSSAKPSTDFHNLARELENSRGGSSCSPAQSLSSGSGSGGGGGHQEAEL 300
PESSNPSAAAGGSSAKPSTDFHNLARELENSRGGSSCSPAQSLSSGSGSGGGGGHQEAEL
Sbjct: 241 PESSNPSAAAGGSSAKPSTDFHNLARELENSRGGSSCSPAQSLSSGSGSGGGGGHQEAEL 300
Query: 301 SPDGIATGGGKGKRKFPEEAAEGGGGAGLVGGRGRFVERPLPASKEDLVCTPQQYRASGS 360
SPDGIATGGGKGKRKFPEEAAEGGGGAGLVGGRGRFVERPLPASKEDLVCTPQQYRASGS
Sbjct: 301 SPDGIATGGGKGKRKFPEEAAEGGGGAGLVGGRGRFVERPLPASKEDLVCTPQQYRASGS 360
Query: 361 YFGLEENGRLFAPPSPETGEAKRSAFVEVKKAARAASLQEEGTADGAGVASEDQDAGGGG 420
YFGLEENGRLFAPPSPETGEAKRSAFVEVKKAARAASLQEEGTADGAGVASEDQDAGGGG
Sbjct: 361 YFGLEENGRLFAPPSPETGEAKRSAFVEVKKAARAASLQEEGTADGAGVASEDQDAGGGG 420
Query: 421 GSSTPAAASPVGAEKLLAPRPGGPLPSRLEGGSPARGSAFTSVPQLGSAGSTSGGGGTGA 480
GSSTPAAASPVGAEKLLAPRPGGPLPSRLEGGSPARGSAFTSVPQLGSAGSTSGGGGTGA
Sbjct: 421 GSSTPAAASPVGAEKLLAPRPGGPLPSRLEGGSPARGSAFTSVPQLGSAGSTSGGGGTGA 480
Query: 481 GAAGGAGGGQGAASDERKSAFSQPARSFSQLSPLVLGQKLGALEPCHPADGVGPTRLYPA 540
GAAGGAGGGQGAASDERKSAFSQPARSFSQLSPLVLGQKLGALEPCHPADGVGPTRLYPA
Sbjct: 481 GAAGGAGGGQGAASDERKSAFSQPARSFSQLSPLVLGQKLGALEPCHPADGVGPTRLYPA 540
Query: 541 AADPLAVKLQGAADLNGGCGSLPSGGGGLPKQSPFLYATAFWPKSSAAAAAAAAAAAAGP 600
AADPLAVKLQGAADLNGGCGSLPSGGGGLPKQSPFLYATAFWPKSSAAAAAAAAAAAAGP
Sbjct: 541 AADPLAVKLQGAADLNGGCGSLPSGGGGLPKQSPFLYATAFWPKSSAAAAAAAAAAAAGP 600
Query: 601 LQLQLPSALTLLPPSFTSLCLPAQNWCAKCNASFRMTSDLVYHMRSHHKKEYAMEPLVKR 660
LQLQLPSALTLLPPSFTSLCLPAQNWCAKCNASFRMTSDLVYHMRSHHKKEYAMEPLVKR
Sbjct: 601 LQLQLPSALTLLPPSFTSLCLPAQNWCAKCNASFRMTSDLVYHMRSHHKKEYAMEPLVKR 660
Query: 661 RREEKLKCPICNESFRERHHLSRHMTSHN 689
RREEKLKCPICNESFRERHHLSRHMTSHN
Sbjct: 661 RREEKLKCPICNESFRERHHLSRHMTSHN 689
>gi|150378439 PR domain containing 8 [Homo sapiens]
Length = 689
Score = 1404 bits (3635), Expect = 0.0
Identities = 689/689 (100%), Positives = 689/689 (100%)
Query: 1 MEDTGIQRGIWDGDAKAVQQCLTDIFTSVYTTCDIPENAIFGPCVLSHTSLYDSIAFIAL 60
MEDTGIQRGIWDGDAKAVQQCLTDIFTSVYTTCDIPENAIFGPCVLSHTSLYDSIAFIAL
Sbjct: 1 MEDTGIQRGIWDGDAKAVQQCLTDIFTSVYTTCDIPENAIFGPCVLSHTSLYDSIAFIAL 60
Query: 61 KSTDKRTVPYIFRVDTSAANGSSEGLMWLRLVQSARDKEEQNLEAYIKNGQLFYRSLRRI 120
KSTDKRTVPYIFRVDTSAANGSSEGLMWLRLVQSARDKEEQNLEAYIKNGQLFYRSLRRI
Sbjct: 61 KSTDKRTVPYIFRVDTSAANGSSEGLMWLRLVQSARDKEEQNLEAYIKNGQLFYRSLRRI 120
Query: 121 AKDEELLVWYGKELTELLLLCPSRSHNKMNGSSPYTCLECSQRFQFEFPYVAHLRFRCPK 180
AKDEELLVWYGKELTELLLLCPSRSHNKMNGSSPYTCLECSQRFQFEFPYVAHLRFRCPK
Sbjct: 121 AKDEELLVWYGKELTELLLLCPSRSHNKMNGSSPYTCLECSQRFQFEFPYVAHLRFRCPK 180
Query: 181 RLHSADISPQDEQGGGVGTKDHGGGGGGGKDQQQQQQEAPLGPGPKFCKAGPLHHYPSPS 240
RLHSADISPQDEQGGGVGTKDHGGGGGGGKDQQQQQQEAPLGPGPKFCKAGPLHHYPSPS
Sbjct: 181 RLHSADISPQDEQGGGVGTKDHGGGGGGGKDQQQQQQEAPLGPGPKFCKAGPLHHYPSPS 240
Query: 241 PESSNPSAAAGGSSAKPSTDFHNLARELENSRGGSSCSPAQSLSSGSGSGGGGGHQEAEL 300
PESSNPSAAAGGSSAKPSTDFHNLARELENSRGGSSCSPAQSLSSGSGSGGGGGHQEAEL
Sbjct: 241 PESSNPSAAAGGSSAKPSTDFHNLARELENSRGGSSCSPAQSLSSGSGSGGGGGHQEAEL 300
Query: 301 SPDGIATGGGKGKRKFPEEAAEGGGGAGLVGGRGRFVERPLPASKEDLVCTPQQYRASGS 360
SPDGIATGGGKGKRKFPEEAAEGGGGAGLVGGRGRFVERPLPASKEDLVCTPQQYRASGS
Sbjct: 301 SPDGIATGGGKGKRKFPEEAAEGGGGAGLVGGRGRFVERPLPASKEDLVCTPQQYRASGS 360
Query: 361 YFGLEENGRLFAPPSPETGEAKRSAFVEVKKAARAASLQEEGTADGAGVASEDQDAGGGG 420
YFGLEENGRLFAPPSPETGEAKRSAFVEVKKAARAASLQEEGTADGAGVASEDQDAGGGG
Sbjct: 361 YFGLEENGRLFAPPSPETGEAKRSAFVEVKKAARAASLQEEGTADGAGVASEDQDAGGGG 420
Query: 421 GSSTPAAASPVGAEKLLAPRPGGPLPSRLEGGSPARGSAFTSVPQLGSAGSTSGGGGTGA 480
GSSTPAAASPVGAEKLLAPRPGGPLPSRLEGGSPARGSAFTSVPQLGSAGSTSGGGGTGA
Sbjct: 421 GSSTPAAASPVGAEKLLAPRPGGPLPSRLEGGSPARGSAFTSVPQLGSAGSTSGGGGTGA 480
Query: 481 GAAGGAGGGQGAASDERKSAFSQPARSFSQLSPLVLGQKLGALEPCHPADGVGPTRLYPA 540
GAAGGAGGGQGAASDERKSAFSQPARSFSQLSPLVLGQKLGALEPCHPADGVGPTRLYPA
Sbjct: 481 GAAGGAGGGQGAASDERKSAFSQPARSFSQLSPLVLGQKLGALEPCHPADGVGPTRLYPA 540
Query: 541 AADPLAVKLQGAADLNGGCGSLPSGGGGLPKQSPFLYATAFWPKSSAAAAAAAAAAAAGP 600
AADPLAVKLQGAADLNGGCGSLPSGGGGLPKQSPFLYATAFWPKSSAAAAAAAAAAAAGP
Sbjct: 541 AADPLAVKLQGAADLNGGCGSLPSGGGGLPKQSPFLYATAFWPKSSAAAAAAAAAAAAGP 600
Query: 601 LQLQLPSALTLLPPSFTSLCLPAQNWCAKCNASFRMTSDLVYHMRSHHKKEYAMEPLVKR 660
LQLQLPSALTLLPPSFTSLCLPAQNWCAKCNASFRMTSDLVYHMRSHHKKEYAMEPLVKR
Sbjct: 601 LQLQLPSALTLLPPSFTSLCLPAQNWCAKCNASFRMTSDLVYHMRSHHKKEYAMEPLVKR 660
Query: 661 RREEKLKCPICNESFRERHHLSRHMTSHN 689
RREEKLKCPICNESFRERHHLSRHMTSHN
Sbjct: 661 RREEKLKCPICNESFRERHHLSRHMTSHN 689
>gi|23308499 zinc finger protein 488 [Homo sapiens]
Length = 340
Score = 144 bits (364), Expect = 2e-34
Identities = 117/341 (34%), Positives = 158/341 (46%), Gaps = 47/341 (13%)
Query: 372 APPSPETGEAKRSAFVEVKKAARAASLQEEGTADGAGVASEDQDAGGGGGSSTPAAASPV 431
AP SP R + E+ + + L++ + G + AG GS+ A
Sbjct: 24 APLSPSAENRWRLSEPELGRGCKPVLLEK---TNRLGPEAAVGRAGRDVGSAELALLVAP 80
Query: 432 GAEKLLAPRPGGPLPSRLEGGSPARGSAFTSVPQL------------------GSAGSTS 473
G PRPG PLP + G R SAFT +P++ G G+
Sbjct: 81 GK-----PRPGKPLPPKTRGEQ--RQSAFTELPRMKDRQVDAQAQEREHDDPTGQPGAPQ 133
Query: 474 GGGGTGAGAAGGA--GGGQGAASDERKSAFSQPARSFSQLSPLVLGQKLGALEPCHPADG 531
G AG A E++SAFS+P + ++ L G AD
Sbjct: 134 LTQNIPRGPAGSKVFSVWPSGARSEQRSAFSKPTKRPAERPELTSVFPAG-----ESADA 188
Query: 532 VGPTRLYPAAADPLAV--KLQGAADLNGGCGSLPSGGGGLPKQSPFLYATAFWPKSSAAA 589
+G D LA +L L G +L + P S FL A W + + A
Sbjct: 189 LGELSGLLNTTD-LACWGRLSTPKLLVGDLWNLQALPQNAPLCSTFLGAPTLWLEHTQAQ 247
Query: 590 AAAAAAAAAGPLQLQLPSALTLLPPSFTSLCLPAQNWCAKCNASFRMTSDLVYHMRSHHK 649
++++ ++ LLPP+ TSL L QNWCAKCN SFR+TSDLV+HMRSHHK
Sbjct: 248 VPPPSSSST--------TSWALLPPTLTSLGLSTQNWCAKCNLSFRLTSDLVFHMRSHHK 299
Query: 650 KEYA-MEPLVKRRREEKLKCPICNESFRERHHLSRHMTSHN 689
KE+A +P ++RREE L CP+C E FRERHHLSRHMTSH+
Sbjct: 300 KEHAGPDPHSQKRREEALACPVCQEHFRERHHLSRHMTSHS 340
>gi|124107614 PR domain containing 13 [Homo sapiens]
Length = 707
Score = 77.0 bits (188), Expect = 5e-14
Identities = 94/346 (27%), Positives = 130/346 (37%), Gaps = 48/346 (13%)
Query: 27 TSVYTTCDIPENAIFGPCVLSHTSLYDSIAFIALKSTDKRTVPYIFRVDTSAANGSSEGL 86
TSV C IP GP + T + K+ V + + GS L
Sbjct: 10 TSVSADCCIPAGLRLGP--VPGTFKLGKYLSDRREPGPKKKVRMVRGELVDESGGSP--L 65
Query: 87 MWLRLVQSARDKEEQNLEAY--IKNGQLFYRSLRRIAKDEELLVWYGKELTEL--LLLCP 142
W+ L+++AR+ +EQ LEA + GQ+FYR+LR + EEL VWY L + +
Sbjct: 66 EWIGLIRAARNSQEQTLEAIADLPGGQIFYRALRDVQPGEELTVWYSNSLAQWFDIPTTA 125
Query: 143 SRSHNKMNGSSPYTCLECSQRFQFEFPYVAHLRFRCPKRLHSADISPQDEQGGGVGTKDH 202
+ +H++ G Y C C + F++ AHLRF C + S GGG
Sbjct: 126 TPTHDE-KGEERYICWYCWRTFRYPNSLKAHLRFHC---VFSGG-------GGGAFLHHE 174
Query: 203 GGGGGGGKDQQQQQQEAPLGPGPKFC---KAGPLHHYPSPSP--------------ESSN 245
G +P P P F +AG L +P P SS
Sbjct: 175 HAARQGAVPAADGLGLSPKPPAPDFAAPSQAGTLRPHPLGPPPVQACGAREGIKREASSA 234
Query: 246 PSAAA--GGSSAKPSTDFHNLARELENSRGGSSCSPAQSLSSGSGSGGGG-----GHQEA 298
PSA + G +P L R L+ S + GS +G G G + A
Sbjct: 235 PSATSPTPGKWGQPKKGKEQLDRALDMSGAARGQGHFLGIVGGSSAGVGSLAFYPGVRSA 294
Query: 299 ELSPDGIATGGGKGKRKFPEEAAEGGGGAGLVGGR----GRFVERP 340
P G+A E + GAGL GR GR RP
Sbjct: 295 -FKPAGLARAAAAAHGDPYREESSSKQGAGLALGRLLGGGRACGRP 339
>gi|33946327 nucleoporin 214kDa [Homo sapiens]
Length = 2090
Score = 62.4 bits (150), Expect = 1e-09
Identities = 89/320 (27%), Positives = 117/320 (36%), Gaps = 52/320 (16%)
Query: 232 PLHHYPSPSPESSNPSAAAGGSSAKPSTDFHNLARELENSRGG---SSCSPAQSLSSGSG 288
P P+ S +S + G +S+ S+ + + N+ GG S +PA S G G
Sbjct: 1754 PAFGQPASSTPTSTSGSVFGAASSTSSSSSFSFGQSSPNTGGGLFGQSNAPAFGQSPGFG 1813
Query: 289 SGGG--GGHQEAELSPDGIATGGGKGKRKFPEEAAEGGGGAGLVGGRGRFVERPLPASKE 346
GG GG A + AT G F + + G G V G+ AS
Sbjct: 1814 QGGSVFGGTSAATTTA---ATSGFS----FCQASGFGSSNTGSVFGQA--------ASTG 1858
Query: 347 DLVCTPQQYRASGSYFGLEENGR-------LFAPPSPETGE-----AKRSAFVEVKKAAR 394
+V Q +SGS FG GR L PS + + F +
Sbjct: 1859 GIVFGQQSSSSSGSVFGSGNTGRGGGFFSGLGGKPSQDAANKNPFSSASGGFGSTATSNT 1918
Query: 395 AASLQEEGTADGAGVAS----EDQDAG----GGG-------GSSTPAAASPVGAEKLLAP 439
+ G G AS E + G GGG G S+P GA +
Sbjct: 1919 SNLFGNSGAKTFGGFASSSFGEQKPTGTFSSGGGSVASQGFGFSSPNKTGGFGAAPVFGS 1978
Query: 440 RP--GGPLPSRLEGGSPARGSAFTSVPQLGSAGSTSGGGGTGAGAAGGAGGGQGAASDER 497
P GG S GG PA GSA LGS G G GT A +AGG G G + +
Sbjct: 1979 PPTFGG---SPGFGGVPAFGSAPAFTSPLGSTGGKVFGEGTAAASAGGFGFGSSSNTTSF 2035
Query: 498 KSAFSQPARSFSQLSPLVLG 517
+ SQ A +F LS G
Sbjct: 2036 GTLASQNAPTFGSLSQQTSG 2055
Score = 36.2 bits (82), Expect = 0.10
Identities = 86/396 (21%), Positives = 133/396 (33%), Gaps = 32/396 (8%)
Query: 242 ESSNPSAAAGGSSAKPSTDFHNLARELENSRGGSSCSPAQSLSSGSGSGGGGGHQEAELS 301
ESS P A + G +KPS + + S+ +P + +S S G + S
Sbjct: 1248 ESSQPDAFSSGGGSKPSYEAIPESSPPSGITSASNTTPGEPAASSSRPVAPSGTALSTTS 1307
Query: 302 PDGIATGGGKGKRKFPEEAAEG--GGGAGLVGGRGRFVERPLPASKEDLVCTPQQYRASG 359
G+ FP A G +GL G+ +P + + + Q + SG
Sbjct: 1308 SKLETPPSKLGELLFPSSLAGETLGSFSGLRVGQADDSTKPTNKASSTSLTSTQPTKTSG 1367
Query: 360 SYFGLEENGRLFAPP------SPETGEAKRSAFVEVKKAARAASLQEEGTADGAGVASED 413
G APP P + + V A +S G+ S
Sbjct: 1368 VPSGF----NFTAPPVLGKHTEPPVTSSATTTSVAPPAATSTSSTAVFGSLPVTSAGSSG 1423
Query: 414 QDAGGGGGSSTPAAASPVGAEKLLAP-RPGGPLPSRLEGGSPARGSAFTSVPQLGSAGST 472
+ GG S + G+++ + P P P+ P TS P L
Sbjct: 1424 VISFGGTSLSAGKTSFSFGSQQTNSTVPPSAPPPTTAATPLP------TSFPTLSFGSLL 1477
Query: 473 SGGGGTGAGAAGGAGGGQGAASD-ERKSAFSQPARSFSQLSPLVLGQKLGALEPCHPADG 531
S + G + +S K S+ + S + L L ++ A P P
Sbjct: 1478 SSATTPSLPMSAGRSTEEATSSALPEKPGDSEVSASAASL----LEEQQSAQLPQAPPQT 1533
Query: 532 VGPTRLYPAAADPLAVKLQGAADLNGGCGSLPSGGGGLPKQSPFLYATAFWPKSS----- 586
+ P A P AV G A + +L + P A P SS
Sbjct: 1534 SDSVKKEPVLAQP-AVSNSGTAASSTSLVALSAEATPATTGVPDARTEAVPPASSFSVPG 1592
Query: 587 AAAAAAAAAAAAGPLQLQLPSALTLLPPSFTSLCLP 622
A AAA ++AGP+ ++ S T + S TS+ P
Sbjct: 1593 QTAVTAAAISSAGPVAVETSS--TPIASSTTSIVAP 1626
>gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2
[Homo sapiens]
Length = 2191
Score = 58.9 bits (141), Expect = 2e-08
Identities = 99/411 (24%), Positives = 135/411 (32%), Gaps = 45/411 (10%)
Query: 210 KDQQQQQQEAPLGPGPKFCKAGPLHHYPSPSPESSNP------SAAAGGSSAKPSTDFHN 263
+ QQQQQQ+ P+ AG P P P+ P +AAGG + P +
Sbjct: 65 QQQQQQQQQHPISNNNSLGGAG--GGAPQPGPDMEQPQHGGAKDSAAGGQADPPGPPLLS 122
Query: 264 LARELENSRGGSSCSPAQSLSSGSGSGGGGGHQEAELSPDGIATGGGKGKRKFPEEAAEG 323
+ E+ PA G G G Q P GGG G PE
Sbjct: 123 KPGD-EDDAPPKMGEPAGGRYEHPGLGALGTQQ-----PPVAVPGGGGGPAAVPEFNNYY 176
Query: 324 GGGAGLVGGRGRFVERPLPASKEDLVCTPQQYRASGSYFGLEENGRLFAPPSPETGEAKR 383
G A GG G R P C Q G+ + A +P + + +
Sbjct: 177 GSAAPASGGPG---GRAGP-------CFDQHGGQQSPGMGMMHSASAAAAGAPGSMDPLQ 226
Query: 384 SAF--VEVKKAARAASLQEEGTADGAGVASEDQDAGGGGGSSTPAAASPVGAEKLLAPRP 441
++ + G G G GGGG A A GA + A
Sbjct: 227 NSHEGYPNSQCNHYPGYSRPGAGGGGGGGGGGGGGSGGGGGGGGAGAGGAGAGAVAAAAA 286
Query: 442 GGPLPSRLEGGSPARGSA----FTSVPQLGSAGSTSGGGGTGA-----GAAGGAGGG-QG 491
+ GG GS+ S P+ G G GG GA AAG A GG Q
Sbjct: 287 AAAAAAGGGGGGGYGGSSAGYGVLSSPRQQGGGMMMGPGGGGAASLSKAAAGSAAGGFQR 346
Query: 492 AASDERKSAFSQPARSFSQLSPLVLGQKLGALEPCHPADGVGPTRLYPAAADPLAVKLQG 551
A + + + P + SP + + G P + + P P + P + Q
Sbjct: 347 FAGQNQHPSGATPTLNQLLTSPSPMMRSYGGSYPEYSSPSAPP----PPPSQP---QSQA 399
Query: 552 AADLNGGCGSLPSGGGGLPKQSPFLYATA--FWPKSSAAAAAAAAAAAAGP 600
AA G + G GL K YA A W + + A + GP
Sbjct: 400 AAAGAAAGGQQAAAGMGLGKDMGAQYAAASPAWAAAQQRSHPAMSPGTPGP 450
Score = 58.2 bits (139), Expect = 3e-08
Identities = 112/447 (25%), Positives = 151/447 (33%), Gaps = 80/447 (17%)
Query: 195 GGVGTKDH-----GGGGGGGKDQQQQQ---QEAPLGPGPKFCKAGPL--HHYPSPSPESS 244
G +GT+ GGGGG + AP GP +AGP H SP
Sbjct: 148 GALGTQQPPVAVPGGGGGPAAVPEFNNYYGSAAPASGGPGG-RAGPCFDQHGGQQSPGMG 206
Query: 245 NPSAAAGGSSAKPSTDFHNLARELENSRGG---SSCS--PAQSLSSGSGSGGGGGHQEAE 299
+A+ ++ P + L+NS G S C+ P S G GGGGG
Sbjct: 207 MMHSASAAAAGAPGS-----MDPLQNSHEGYPNSQCNHYPGYSRPGAGGGGGGGG----- 256
Query: 300 LSPDGIATGGGKGKRKFPEEAAEGGGGAGLVGGRGRFVERPLPASKEDLVCTPQQYRASG 359
GGG G GGGGAG GG G A+ G
Sbjct: 257 ------GGGGGSG-------GGGGGGGAG-AGGAGAGAVAAAAAA----AAAAAGGGGGG 298
Query: 360 SYFGLEENGRLFAPPSPETGEAKRSAFVEVKKAARAASLQEEGTADGAGVASEDQDAGGG 419
Y G + + P + G + AASL + AG
Sbjct: 299 GYGGSSAGYGVLSSPRQQGG-----GMMMGPGGGGAASLSKAAAGSAAGGFQR-----FA 348
Query: 420 GGSSTPAAASPVGAEKLLAPRP-----GGPLPSRLEGGSPARGSAFTSVPQLGSAGSTSG 474
G + P+ A+P + L +P P GG P E SP+ S PQ +A + +
Sbjct: 349 GQNQHPSGATPTLNQLLTSPSPMMRSYGGSYP---EYSSPSAPPPPPSQPQSQAAAAGAA 405
Query: 475 GGGTGAGAAGGAG---GGQGAASDERKSAFSQPARSFSQLSPLVLGQKLGALE--PCHPA 529
GG A A G G G Q AA+ +A Q RS +SP G +G + P P
Sbjct: 406 AGGQQAAAGMGLGKDMGAQYAAASPAWAAAQQ--RSHPAMSPGTPGPTMGRSQGSPMDPM 463
Query: 530 DGVGPTRLYPAAADPLAVKLQGAADLNGGCGSLPSGGGGLPKQSPFLYATAFWPKSSAAA 589
P +LY ++P + Q S P GG P Y ++ A
Sbjct: 464 VMKRP-QLYGMGSNPHSQPQQ----------SSPYPGGSYGPPGPQRYPIGIQGRTPGAM 512
Query: 590 AAAAAAAAAGPLQLQLPSALTLLPPSF 616
A L+PP +
Sbjct: 513 AGMQYPQQQDSGDATWKETFWLMPPQY 539
Score = 40.8 bits (94), Expect = 0.004
Identities = 74/280 (26%), Positives = 97/280 (34%), Gaps = 60/280 (21%)
Query: 194 GGGVGTKDHGGGGGGGKDQQQQQQEAPLGPGPKFCKAGPLHHYPSPSPESSNPSAAAGGS 253
GGG G GGGGGGG G G AG + + ++ +AAAGG
Sbjct: 254 GGGGGGGGSGGGGGGG------------GAGAGGAGAGAV------AAAAAAAAAAAGGG 295
Query: 254 SAKPSTDFHNLARELENSRGGSSCSPAQSLSSGSGSGGGGGHQEAELSPDGIATGGGKGK 313
GGSS LSS GGG + P GGG
Sbjct: 296 GG--------------GGYGGSSAGYG-VLSSPRQQGGG-----MMMGP-----GGGGAA 330
Query: 314 RKFPEEAAEGGGGAGLVGGRGRFVERPLPASKEDLVC-TPQQYRASGSYFGLEENGRLFA 372
A GG G+ + P + L +P GSY E A
Sbjct: 331 SLSKAAAGSAAGGFQRFAGQNQHPSGATPTLNQLLTSPSPMMRSYGGSY---PEYSSPSA 387
Query: 373 PPSPETGEAKRSAFVEVKKAARAASLQEEGTADGAGVASEDQDAGGGGGSSTPA-AASPV 431
PP P + ++A A AA Q+ G G +D G +++PA AA+
Sbjct: 388 PPPPPSQPQSQAA-----AAGAAAGGQQAAAGMGLG-----KDMGAQYAAASPAWAAAQQ 437
Query: 432 GAEKLLAPRPGGPLPSRLEGGSPARGSAFTSVPQLGSAGS 471
+ ++P GP R + GSP PQL GS
Sbjct: 438 RSHPAMSPGTPGPTMGRSQ-GSPMDPMVMKR-PQLYGMGS 475
Score = 34.3 bits (77), Expect = 0.40
Identities = 62/269 (23%), Positives = 87/269 (32%), Gaps = 50/269 (18%)
Query: 215 QQQEAPLGPGPKFCKAGPLHHYPSPSPESSNPSAAAGGSSAKPSTDFHNLARELENSRGG 274
QQ + GP+ + GP +Y P S PSA+ G
Sbjct: 774 QQSNSSGTYGPQMSQYGPQGNYSRPPAYSGVPSASYSGP--------------------- 812
Query: 275 SSCSPAQSLSSGSGSGGGGGHQEAELSPDGIATGGGKGKRKFP---EEAAEGGGGAGLVG 331
P +S+ + G G Q P G G R FP G G
Sbjct: 813 ---GPGMGISANNQMHGQGPSQPCGAVPLGRMPSAGMQNRPFPGNMSSMTPSSPGMSQQG 869
Query: 332 GRGRFVERPLPASK-EDLVCTPQQYRAS------GSYFGLEENGRLFAPPSPETGEAKRS 384
G G P K ++ Q A+ GS+ G+ ++G L A SP + S
Sbjct: 870 GPGMGPPMPTVNRKAQEAAAAVMQAAANSAQSRQGSFPGMNQSG-LMASSSPYSQPMNNS 928
Query: 385 AFVEVKKAA--RAASLQEEGTADGAGVASEDQDAGGGGGSSTPAAASPVGAEKLLAPRPG 442
+ + +A A +A G+A D G S P G E+ G
Sbjct: 929 SSLMNTQAPPYSMAPAMVNSSAASVGLA----DMMSPGESKLPLPLKADGKEE------G 978
Query: 443 GPLP---SRLEGGSPARGSAFTSVPQLGS 468
P P S+ S G T V +LG+
Sbjct: 979 TPQPESKSKKSSSSTTTGEKITKVYELGN 1007
>gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1
[Homo sapiens]
Length = 2231
Score = 58.2 bits (139), Expect = 3e-08
Identities = 102/413 (24%), Positives = 139/413 (33%), Gaps = 49/413 (11%)
Query: 210 KDQQQQQQEAPLGPGPKFCKAGPLHHYPSPSPESSNPS------AAAGGSSAKPSTDFHN 263
+ QQQQQQ+ P+ AG P P P+ P +AAGG + P +
Sbjct: 65 QQQQQQQQQHPISNNNSLGGAGG--GAPQPGPDMEQPQHGGAKDSAAGGQADPPGPPLLS 122
Query: 264 LARELENSRGGSSCSPAQSLSSGSGSGGGGGHQEAELSPDGIATGGGKGKRKFPEEAAEG 323
+ E+ PA G G G Q P GGG G PE
Sbjct: 123 KPGD-EDDAPPKMGEPAGGRYEHPGLGALGTQQ-----PPVAVPGGGGGPAAVPEFNNYY 176
Query: 324 GGGAGLVGGRGRFVERPLPASKEDLVCTPQQYRASGSYFGLEENGRLFAPPSPETGEAKR 383
G A GG G R P C Q G+ + A +P + + +
Sbjct: 177 GSAAPASGGPGG---RAGP-------CFDQHGGQQSPGMGMMHSASAAAAGAPGSMDPLQ 226
Query: 384 SAFVEVKKA--------ARAASLQEEGTADGAGVASEDQDAGGGGGSSTPAAASPVGAEK 435
++ + +R + G G G S GGG G+ A + A
Sbjct: 227 NSHEGYPNSQCNHYPGYSRPGAGGGGGGGGGGGGGSGGGGGGGGAGAGGAGAGAVAAAAA 286
Query: 436 LLAPRPGGPLPSRLEGGSPARGSAFTSVPQLGSAGSTSGGGGTGA-----GAAGGAGGG- 489
A GG GGS A G S P+ G G GG GA AAG A GG
Sbjct: 287 AAAAAAGGGGGGGY-GGSSA-GYGVLSSPRQQGGGMMMGPGGGGAASLSKAAAGSAAGGF 344
Query: 490 QGAASDERKSAFSQPARSFSQLSPLVLGQKLGALEPCHPADGVGPTRLYPAAADPLAVKL 549
Q A + + + P + SP + + G P + + P P + P +
Sbjct: 345 QRFAGQNQHPSGATPTLNQLLTSPSPMMRSYGGSYPEYSSPSAPP----PPPSQP---QS 397
Query: 550 QGAADLNGGCGSLPSGGGGLPKQSPFLYATA--FWPKSSAAAAAAAAAAAAGP 600
Q AA G + G GL K YA A W + + A + GP
Sbjct: 398 QAAAAGAAAGGQQAAAGMGLGKDMGAQYAAASPAWAAAQQRSHPAMSPGTPGP 450
Score = 57.8 bits (138), Expect = 3e-08
Identities = 103/391 (26%), Positives = 139/391 (35%), Gaps = 70/391 (17%)
Query: 195 GGVGTKDH-----GGGGGGGKDQQQQQ---QEAPLGPGPKFCKAGPL--HHYPSPSPESS 244
G +GT+ GGGGG + AP GP +AGP H SP
Sbjct: 148 GALGTQQPPVAVPGGGGGPAAVPEFNNYYGSAAPASGGPGG-RAGPCFDQHGGQQSPGMG 206
Query: 245 NPSAAAGGSSAKPSTDFHNLARELENSRGG---SSCS--PAQSLSSGSGSGGGGGHQEAE 299
+A+ ++ P + L+NS G S C+ P S G GGGGG
Sbjct: 207 MMHSASAAAAGAPGS-----MDPLQNSHEGYPNSQCNHYPGYSRPGAGGGGGGGG----- 256
Query: 300 LSPDGIATGGGKGKRKFPEEAAEGGGGAGLVGGRGRFVERPLPASKEDLVCTPQQYRASG 359
GGG G GGGGAG GG G A+ G
Sbjct: 257 ------GGGGGSG-------GGGGGGGAG-AGGAGAGAVAAAAAA----AAAAAGGGGGG 298
Query: 360 SYFGLEENGRLFAPPSPETGEAKRSAFVEVKKAARAASLQEEGTADGAGVASEDQDAGGG 419
Y G + + P + G + AASL + AG
Sbjct: 299 GYGGSSAGYGVLSSPRQQGG-----GMMMGPGGGGAASLSKAAAGSAAGGFQR-----FA 348
Query: 420 GGSSTPAAASPVGAEKLLAPRP-----GGPLPSRLEGGSPARGSAFTSVPQLGSAGSTSG 474
G + P+ A+P + L +P P GG P E SP+ S PQ +A + +
Sbjct: 349 GQNQHPSGATPTLNQLLTSPSPMMRSYGGSYP---EYSSPSAPPPPPSQPQSQAAAAGAA 405
Query: 475 GGGTGAGAAGGAG---GGQGAASDERKSAFSQPARSFSQLSPLVLGQKLGALE--PCHPA 529
GG A A G G G Q AA+ +A Q RS +SP G +G + P P
Sbjct: 406 AGGQQAAAGMGLGKDMGAQYAAASPAWAAAQQ--RSHPAMSPGTPGPTMGRSQGSPMDPM 463
Query: 530 DGVGPTRLYPAAADPLAVKLQGAADLNGGCG 560
P +LY ++P + Q + G G
Sbjct: 464 VMKRP-QLYGMGSNPHSQPQQSSPYPGGSYG 493
Score = 40.8 bits (94), Expect = 0.004
Identities = 74/280 (26%), Positives = 97/280 (34%), Gaps = 60/280 (21%)
Query: 194 GGGVGTKDHGGGGGGGKDQQQQQQEAPLGPGPKFCKAGPLHHYPSPSPESSNPSAAAGGS 253
GGG G GGGGGGG G G AG + + ++ +AAAGG
Sbjct: 254 GGGGGGGGSGGGGGGG------------GAGAGGAGAGAV------AAAAAAAAAAAGGG 295
Query: 254 SAKPSTDFHNLARELENSRGGSSCSPAQSLSSGSGSGGGGGHQEAELSPDGIATGGGKGK 313
GGSS LSS GGG + P GGG
Sbjct: 296 GG--------------GGYGGSSAGYG-VLSSPRQQGGG-----MMMGP-----GGGGAA 330
Query: 314 RKFPEEAAEGGGGAGLVGGRGRFVERPLPASKEDLVC-TPQQYRASGSYFGLEENGRLFA 372
A GG G+ + P + L +P GSY E A
Sbjct: 331 SLSKAAAGSAAGGFQRFAGQNQHPSGATPTLNQLLTSPSPMMRSYGGSY---PEYSSPSA 387
Query: 373 PPSPETGEAKRSAFVEVKKAARAASLQEEGTADGAGVASEDQDAGGGGGSSTPA-AASPV 431
PP P + ++A A AA Q+ G G +D G +++PA AA+
Sbjct: 388 PPPPPSQPQSQAA-----AAGAAAGGQQAAAGMGLG-----KDMGAQYAAASPAWAAAQQ 437
Query: 432 GAEKLLAPRPGGPLPSRLEGGSPARGSAFTSVPQLGSAGS 471
+ ++P GP R + GSP PQL GS
Sbjct: 438 RSHPAMSPGTPGPTMGRSQ-GSPMDPMVMKR-PQLYGMGS 475
>gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3
[Homo sapiens]
Length = 2178
Score = 58.2 bits (139), Expect = 3e-08
Identities = 102/413 (24%), Positives = 139/413 (33%), Gaps = 49/413 (11%)
Query: 210 KDQQQQQQEAPLGPGPKFCKAGPLHHYPSPSPESSNPS------AAAGGSSAKPSTDFHN 263
+ QQQQQQ+ P+ AG P P P+ P +AAGG + P +
Sbjct: 65 QQQQQQQQQHPISNNNSLGGAGG--GAPQPGPDMEQPQHGGAKDSAAGGQADPPGPPLLS 122
Query: 264 LARELENSRGGSSCSPAQSLSSGSGSGGGGGHQEAELSPDGIATGGGKGKRKFPEEAAEG 323
+ E+ PA G G G Q P GGG G PE
Sbjct: 123 KPGD-EDDAPPKMGEPAGGRYEHPGLGALGTQQ-----PPVAVPGGGGGPAAVPEFNNYY 176
Query: 324 GGGAGLVGGRGRFVERPLPASKEDLVCTPQQYRASGSYFGLEENGRLFAPPSPETGEAKR 383
G A GG G R P C Q G+ + A +P + + +
Sbjct: 177 GSAAPASGGPGG---RAGP-------CFDQHGGQQSPGMGMMHSASAAAAGAPGSMDPLQ 226
Query: 384 SAFVEVKKA--------ARAASLQEEGTADGAGVASEDQDAGGGGGSSTPAAASPVGAEK 435
++ + +R + G G G S GGG G+ A + A
Sbjct: 227 NSHEGYPNSQCNHYPGYSRPGAGGGGGGGGGGGGGSGGGGGGGGAGAGGAGAGAVAAAAA 286
Query: 436 LLAPRPGGPLPSRLEGGSPARGSAFTSVPQLGSAGSTSGGGGTGA-----GAAGGAGGG- 489
A GG GGS A G S P+ G G GG GA AAG A GG
Sbjct: 287 AAAAAAGGGGGGGY-GGSSA-GYGVLSSPRQQGGGMMMGPGGGGAASLSKAAAGSAAGGF 344
Query: 490 QGAASDERKSAFSQPARSFSQLSPLVLGQKLGALEPCHPADGVGPTRLYPAAADPLAVKL 549
Q A + + + P + SP + + G P + + P P + P +
Sbjct: 345 QRFAGQNQHPSGATPTLNQLLTSPSPMMRSYGGSYPEYSSPSAPP----PPPSQP---QS 397
Query: 550 QGAADLNGGCGSLPSGGGGLPKQSPFLYATA--FWPKSSAAAAAAAAAAAAGP 600
Q AA G + G GL K YA A W + + A + GP
Sbjct: 398 QAAAAGAAAGGQQAAAGMGLGKDMGAQYAAASPAWAAAQQRSHPAMSPGTPGP 450
Score = 57.8 bits (138), Expect = 3e-08
Identities = 103/391 (26%), Positives = 139/391 (35%), Gaps = 70/391 (17%)
Query: 195 GGVGTKDH-----GGGGGGGKDQQQQQ---QEAPLGPGPKFCKAGPL--HHYPSPSPESS 244
G +GT+ GGGGG + AP GP +AGP H SP
Sbjct: 148 GALGTQQPPVAVPGGGGGPAAVPEFNNYYGSAAPASGGPGG-RAGPCFDQHGGQQSPGMG 206
Query: 245 NPSAAAGGSSAKPSTDFHNLARELENSRGG---SSCS--PAQSLSSGSGSGGGGGHQEAE 299
+A+ ++ P + L+NS G S C+ P S G GGGGG
Sbjct: 207 MMHSASAAAAGAPGS-----MDPLQNSHEGYPNSQCNHYPGYSRPGAGGGGGGGG----- 256
Query: 300 LSPDGIATGGGKGKRKFPEEAAEGGGGAGLVGGRGRFVERPLPASKEDLVCTPQQYRASG 359
GGG G GGGGAG GG G A+ G
Sbjct: 257 ------GGGGGSG-------GGGGGGGAG-AGGAGAGAVAAAAAA----AAAAAGGGGGG 298
Query: 360 SYFGLEENGRLFAPPSPETGEAKRSAFVEVKKAARAASLQEEGTADGAGVASEDQDAGGG 419
Y G + + P + G + AASL + AG
Sbjct: 299 GYGGSSAGYGVLSSPRQQGG-----GMMMGPGGGGAASLSKAAAGSAAGGFQR-----FA 348
Query: 420 GGSSTPAAASPVGAEKLLAPRP-----GGPLPSRLEGGSPARGSAFTSVPQLGSAGSTSG 474
G + P+ A+P + L +P P GG P E SP+ S PQ +A + +
Sbjct: 349 GQNQHPSGATPTLNQLLTSPSPMMRSYGGSYP---EYSSPSAPPPPPSQPQSQAAAAGAA 405
Query: 475 GGGTGAGAAGGAG---GGQGAASDERKSAFSQPARSFSQLSPLVLGQKLGALE--PCHPA 529
GG A A G G G Q AA+ +A Q RS +SP G +G + P P
Sbjct: 406 AGGQQAAAGMGLGKDMGAQYAAASPAWAAAQQ--RSHPAMSPGTPGPTMGRSQGSPMDPM 463
Query: 530 DGVGPTRLYPAAADPLAVKLQGAADLNGGCG 560
P +LY ++P + Q + G G
Sbjct: 464 VMKRP-QLYGMGSNPHSQPQQSSPYPGGSYG 493
Score = 40.8 bits (94), Expect = 0.004
Identities = 74/280 (26%), Positives = 97/280 (34%), Gaps = 60/280 (21%)
Query: 194 GGGVGTKDHGGGGGGGKDQQQQQQEAPLGPGPKFCKAGPLHHYPSPSPESSNPSAAAGGS 253
GGG G GGGGGGG G G AG + + ++ +AAAGG
Sbjct: 254 GGGGGGGGSGGGGGGG------------GAGAGGAGAGAV------AAAAAAAAAAAGGG 295
Query: 254 SAKPSTDFHNLARELENSRGGSSCSPAQSLSSGSGSGGGGGHQEAELSPDGIATGGGKGK 313
GGSS LSS GGG + P GGG
Sbjct: 296 GG--------------GGYGGSSAGYG-VLSSPRQQGGG-----MMMGP-----GGGGAA 330
Query: 314 RKFPEEAAEGGGGAGLVGGRGRFVERPLPASKEDLVC-TPQQYRASGSYFGLEENGRLFA 372
A GG G+ + P + L +P GSY E A
Sbjct: 331 SLSKAAAGSAAGGFQRFAGQNQHPSGATPTLNQLLTSPSPMMRSYGGSY---PEYSSPSA 387
Query: 373 PPSPETGEAKRSAFVEVKKAARAASLQEEGTADGAGVASEDQDAGGGGGSSTPA-AASPV 431
PP P + ++A A AA Q+ G G +D G +++PA AA+
Sbjct: 388 PPPPPSQPQSQAA-----AAGAAAGGQQAAAGMGLG-----KDMGAQYAAASPAWAAAQQ 437
Query: 432 GAEKLLAPRPGGPLPSRLEGGSPARGSAFTSVPQLGSAGS 471
+ ++P GP R + GSP PQL GS
Sbjct: 438 RSHPAMSPGTPGPTMGRSQ-GSPMDPMVMKR-PQLYGMGS 475
Score = 34.3 bits (77), Expect = 0.40
Identities = 62/269 (23%), Positives = 87/269 (32%), Gaps = 50/269 (18%)
Query: 215 QQQEAPLGPGPKFCKAGPLHHYPSPSPESSNPSAAAGGSSAKPSTDFHNLARELENSRGG 274
QQ + GP+ + GP +Y P S PSA+ G
Sbjct: 761 QQSNSSGTYGPQMSQYGPQGNYSRPPAYSGVPSASYSGP--------------------- 799
Query: 275 SSCSPAQSLSSGSGSGGGGGHQEAELSPDGIATGGGKGKRKFP---EEAAEGGGGAGLVG 331
P +S+ + G G Q P G G R FP G G
Sbjct: 800 ---GPGMGISANNQMHGQGPSQPCGAVPLGRMPSAGMQNRPFPGNMSSMTPSSPGMSQQG 856
Query: 332 GRGRFVERPLPASK-EDLVCTPQQYRAS------GSYFGLEENGRLFAPPSPETGEAKRS 384
G G P K ++ Q A+ GS+ G+ ++G L A SP + S
Sbjct: 857 GPGMGPPMPTVNRKAQEAAAAVMQAAANSAQSRQGSFPGMNQSG-LMASSSPYSQPMNNS 915
Query: 385 AFVEVKKAA--RAASLQEEGTADGAGVASEDQDAGGGGGSSTPAAASPVGAEKLLAPRPG 442
+ + +A A +A G+A D G S P G E+ G
Sbjct: 916 SSLMNTQAPPYSMAPAMVNSSAASVGLA----DMMSPGESKLPLPLKADGKEE------G 965
Query: 443 GPLP---SRLEGGSPARGSAFTSVPQLGS 468
P P S+ S G T V +LG+
Sbjct: 966 TPQPESKSKKSSSSTTTGEKITKVYELGN 994
>gi|153792074 proline rich 12 [Homo sapiens]
Length = 2036
Score = 58.2 bits (139), Expect = 3e-08
Identities = 95/389 (24%), Positives = 131/389 (33%), Gaps = 67/389 (17%)
Query: 194 GGGVGTKDHGGGGGGGKDQQQQQQEAPLGPGPKFCKAGPLHHYPSPSPESSNPSAAAGGS 253
G G + GGGG GG G G + P+ P AAAGG+
Sbjct: 360 GRATGPEAAGGGGAGGG-----------GGGYR-----PIIQSPGYKTGKGGYGAAAGGA 403
Query: 254 SAKPSTDFHNLARELENSRGGSSCSPAQSLSSGSGSGGG----GGHQEAELSPDGIATGG 309
+ P + A S GG + + A +SG+G GG G + L P G
Sbjct: 404 TRPPPP--RSTATPKCQSLGGPAAAYATGKASGAGGAGGQAYSPGQPQGLLGPQAYGQGF 461
Query: 310 GKGKRKFPEEAAEGGGGAGLVGGRGRFVERPLPASKEDLVCTPQQYRASGSYFGLEENGR 369
G G+ + +A GG P P S P SY + G+
Sbjct: 462 GGGQAQDLSKAPSYSGGP------------PQPPSGP----PPPGLATCQSYSPDQLQGQ 505
Query: 370 LF-APPSPETGEAKRSAFVEVKKAARAASLQEEGTADGAGVASEDQDAGGGGGSSTPAAA 428
L+ P G A S + + + S G G GGGG +S
Sbjct: 506 LYGVQGEPYPGPAAHSQGLPTASPSLSYSTGHSPALSGHGGGWGPSSLGGGGEASPSHII 565
Query: 429 SPVGAEKLLAPRPGGPLPSRLEGGSPAR--GSAFTSVPQLGSAGSTSGGGGTGAGAAGGA 486
P+ + PG P G+P + S S P L + G G AGA G
Sbjct: 566 RPLQSPPATGRPPGVGSP-----GAPGKYLSSVLASAPFL----APPGAGSYAAGAGGYK 616
Query: 487 GGGQGAASDERKSAFSQPARSFSQLSPLVLGQKLGALEPCHPADGVGPTRLYPAAADPLA 546
G G G+ E + P ++ ++ L A P + G
Sbjct: 617 GKGDGS---ELLAGPGGPPAERTEDEEFLIQHLLQAPSPPRTSGADG------------L 661
Query: 547 VKLQGAADLNGGCGSLPSGGGGLPKQSPF 575
V GAAD + G G SGG G P +P+
Sbjct: 662 VGEDGAADASKGLGG--SGGAGGPPGTPY 688
Score = 43.9 bits (102), Expect = 5e-04
Identities = 73/293 (24%), Positives = 89/293 (30%), Gaps = 42/293 (14%)
Query: 374 PSPETGEAKRSAFVEVKKAARAASLQEEGTADGAGVASEDQDAGGGGGSSTPAAASP--- 430
PSP GE K A+ G A G A AGGGGG P SP
Sbjct: 339 PSPGAGEPS-------KAGPSGATAGASGRATGPEAAGGG-GAGGGGGGYRPIIQSPGYK 390
Query: 431 -----VGAEKLLAPRPGGP----LPSRLEGGSPARGSAFTSVPQLGSAGSTSGGGGTGAG 481
GA A RP P P G PA A G AG + G G
Sbjct: 391 TGKGGYGAAAGGATRPPPPRSTATPKCQSLGGPAAAYATGKASGAGGAGGQAYSPGQPQG 450
Query: 482 AAGGAGGGQGAASDERKSAFSQPARSFSQLSP------------------LVLGQKLGAL 523
G GQG + + P+ S P + GQ G
Sbjct: 451 LLGPQAYGQGFGGGQAQDLSKAPSYSGGPPQPPSGPPPPGLATCQSYSPDQLQGQLYGVQ 510
Query: 524 EPCHPADGVGPTRLYPAAADPLAVKLQGAADLNG---GCGSLPSGGGGLPKQSPFLYATA 580
+P L P A+ L+ + L+G G G GGGG S +
Sbjct: 511 GEPYPGPAAHSQGL-PTASPSLSYSTGHSPALSGHGGGWGPSSLGGGGEASPSHIIRPLQ 569
Query: 581 FWPKSSAAAAAAAAAAAAGPLQLQLPSALTLLPPSFTSLCLPAQNWCAKCNAS 633
P + + A L L SA L PP S A + K + S
Sbjct: 570 SPPATGRPPGVGSPGAPGKYLSSVLASAPFLAPPGAGSYAAGAGGYKGKGDGS 622
>gi|154146199 sal-like 3 [Homo sapiens]
Length = 1300
Score = 57.8 bits (138), Expect = 3e-08
Identities = 127/529 (24%), Positives = 172/529 (32%), Gaps = 116/529 (21%)
Query: 210 KDQQQQQQEAPLGPGPKFCKAGPLHHYPSPSPES--SNPSAAAGGSSA----KPSTDFHN 263
K Q + E L P P H P E S P + +GG K +F
Sbjct: 8 KPQHLKSDEELLPPD-----GAPEHAAPGEGAEDADSGPESRSGGEETSVCEKCCAEFFK 62
Query: 264 LARELENSRGGSSCSPAQSLSSGSGSGGGGGHQEAELSPDGI---ATGGGKGKRKFPEEA 320
A LE+ R + P + H++A P + + EA
Sbjct: 63 WADFLEHQRSCTKLPPVLIV-----------HEDAPAPPPEDFPEPSPASSPSERAESEA 111
Query: 321 AEGGGGAGLVGGRGRFVERPLPASKEDLVCTPQQYRASGSYFGLEENGRLFAPPSPETGE 380
AE G G G P KE P +G APP+P G
Sbjct: 112 AEEAGAEGAEG-------EARPVEKE---AEPMDAEPAGDTRAPRPPPAAPAPPTPAYGA 161
Query: 381 AKRSAFVEVKKAARAASLQEEGTADGAGVASEDQDAGGGGGSSTPAAASPVGAEKLLA-- 438
+ +E + + A Q A AG G G G AAA P+ E+L+A
Sbjct: 162 PSTNVTLEALLSTKVAVAQFSQGARAAG--------GSGAGGGVAAAAVPLILEQLMALQ 213
Query: 439 --------------------PRPGGPLPSRLEGGSP-ARGSAFTSVPQLGSAGSTSGGGG 477
RP P PS +P A G A + +P L + ++G
Sbjct: 214 QQQIHQLQLIEQIRSQVALMQRPP-PRPSLSPAAAPSAPGPAPSQLPGLAALPLSAG--- 269
Query: 478 TGAGAAGGAGGGQGA-ASDERKSAFSQPARSFSQLSPLVLGQKLGALEPCHPADGVGPTR 536
A AA AG G A A+ E S+P S G P P+ P
Sbjct: 270 --APAAAIAGSGPAAPAAFEGAQPLSRPESGAS-----TPGGPAEPSAPAAPSAAPAPAA 322
Query: 537 LYPAAADPLAVKLQGAADLNGGC---GSLPSGGGGLPKQSPFLYATAFWPKSSAAA---- 589
PA A A Q + GSL GLP SP L P++SA+
Sbjct: 323 PAPAPAPQSAASSQPQSASTPPALAPGSLLGAAPGLP--SPLL------PQTSASGVIFP 374
Query: 590 ----AAAAAAAAAGPLQLQL------PSALTLLPPSFTSLCLPAQNWCAKCNASFRMTSD 639
+ AA A A PL + P +++ P ++ ++ C C F S
Sbjct: 375 NPLVSIAATANALDPLSALMKHRKGKPPNVSVFEPKASAEDPFFKHKCRFCAKVFGSDSA 434
Query: 640 LVYHMRSHHKKEYAMEPLVKRRREEKLKCPICNESFRERHHLSRHMTSH 688
L H+RSH E KC IC F + +L H H
Sbjct: 435 LQIHLRSH-------------TGERPFKCNICGNRFSTKGNLKVHFQRH 470
Score = 37.7 bits (86), Expect = 0.036
Identities = 28/99 (28%), Positives = 38/99 (38%), Gaps = 19/99 (19%)
Query: 592 AAAAAAAGPLQLQLPSALTLL--PPSFTSLCLPAQNWCAKCNASFRMTSDLVYHMRSHHK 649
A AGP + P +L PP T P Q+ C C +F S L H R+H
Sbjct: 1082 AGVQVPAGPQTVMGPGLAPMLAPPPRRT----PKQHNCQSCGKTFSSASALQIHERTH-- 1135
Query: 650 KEYAMEPLVKRRREEKLKCPICNESFRERHHLSRHMTSH 688
E+ C IC +F + +L HM +H
Sbjct: 1136 -----------TGEKPFGCTICGRAFTTKGNLKVHMGTH 1163
Score = 37.0 bits (84), Expect = 0.061
Identities = 35/150 (23%), Positives = 52/150 (34%), Gaps = 16/150 (10%)
Query: 539 PAAADPLAVKLQGAADLNGGCGSLPSGGGGLPKQSPFLYATAFWPKSSAAAAAAAAAAAA 598
PA ++ + + A NG S G G P++ + P S AAA + A
Sbjct: 894 PALSESSSSQALSPAPSNGESFRSKSPGLGAPEEPQEIPLKTERPDSPAAAPGSGGAPGR 953
Query: 599 GPLQLQLPSALTLLPPSFTSLCLPAQNWCAKCNASFRMTSDLVYHMRSHHKKEYAMEPLV 658
++ + P +L L C C C F S L H RSH K
Sbjct: 954 AGIKEEAPFSLLFLSRE-RGKC--PSTVCGVCGKPFACKSALEIHYRSHTK--------- 1001
Query: 659 KRRREEKLKCPICNESFRERHHLSRHMTSH 688
E C +C +L +H+ +H
Sbjct: 1002 ----ERPFVCALCRRGCSTMGNLKQHLLTH 1027
>gi|59806361 hypothetical protein LOC387104 [Homo sapiens]
Length = 947
Score = 56.6 bits (135), Expect = 7e-08
Identities = 62/211 (29%), Positives = 74/211 (35%), Gaps = 27/211 (12%)
Query: 399 QEEGTADGAGVASEDQDAGGGGGS----------STPAAASPVGAEKLLAPRPGGPLPSR 448
Q++G G+ GGGGG+ + P A PV + L R
Sbjct: 79 QQQGNKTGSRTGPPASIRGGGGGAEKATPLAPKGAAPGAVQPVAGAEAAPAATLAALGGR 138
Query: 449 LEGGSPARGSAFTSVPQLGSAGSTSGGGGTGAGAAGGAGGGQGAASDERKSAFSQPARSF 508
G SVP G GG G G GGAGGG G ER+ QP
Sbjct: 139 RPGPPEEPPRELESVPSKLGEPPPLGEGGGGGGEGGGAGGGSG----EREGGAPQPPPPR 194
Query: 509 SQLSPLVLGQKLGALEPCHPADGVGPTRLYPAAADPLAVKLQGAADLNGGCGSL--PSGG 566
V Q+ G G G P+ + A K G N G G SGG
Sbjct: 195 GWRGKGVRAQQRG---------GSGGEGASPSPSSSSAGKTPGTGSRNSGSGVAGGGSGG 245
Query: 567 GGLPKQSPFLYA--TAFWPKSSAAAAAAAAA 595
GG + L + F K AAAAAAAA
Sbjct: 246 GGSYWKEGCLQSELIQFHLKKERAAAAAAAA 276
Score = 42.4 bits (98), Expect = 0.001
Identities = 61/269 (22%), Positives = 83/269 (30%), Gaps = 74/269 (27%)
Query: 266 RELENSRGGSSCSPAQSLSSGSGSGGGGGHQEAELSPDGIATGGGK-------------- 311
++ + ++ GS P S+ G GGG + L+P G A G +
Sbjct: 78 QQQQGNKTGSRTGPPASIRGG----GGGAEKATPLAPKGAAPGAVQPVAGAEAAPAATLA 133
Query: 312 ---GKRKFPEEA------------------AEGGGGAGLVGG--------RGRFVERPLP 342
G+R P E EGGGG G GG G + P P
Sbjct: 134 ALGGRRPGPPEEPPRELESVPSKLGEPPPLGEGGGGGGEGGGAGGGSGEREGGAPQPPPP 193
Query: 343 ASKEDLVCTPQQYRASGSYFGLEENGRLFAPPSPETGEAKRSAFVEVKKAARAAS----- 397
QQ SG A +P TG + V + S
Sbjct: 194 RGWRGKGVRAQQRGGSGGEGASPSPSSSSAGKTPGTGSRNSGSGVAGGGSGGGGSYWKEG 253
Query: 398 ----------LQEEGTADGAGVASEDQDAGGGGGSSTPAAASPVGAEKLLAPRPGGPLPS 447
L++E A A A GGG S + + P + LA P+ +
Sbjct: 254 CLQSELIQFHLKKERAAAAAAAAQMHAKNGGGSSSRSSPVSGPPAVCETLAVASASPMAA 313
Query: 448 RLEGGSPARGSAFTSVPQLGSAGSTSGGG 476
EG PQ + GS SGGG
Sbjct: 314 AAEG------------PQQSAEGSASGGG 330
Score = 36.2 bits (82), Expect = 0.10
Identities = 30/107 (28%), Positives = 40/107 (37%), Gaps = 19/107 (17%)
Query: 189 PQDEQGGGVGTKDHGGGGGGGKDQQQQQQEAPLGPGPKFCKAGPLHHYPSPSPESSNPSA 248
P E GGG G GGG GGG +++ P P K E ++PS
Sbjct: 162 PLGEGGGGGG---EGGGAGGGSGEREGGAPQPPPPRGWRGKGVRAQQRGGSGGEGASPSP 218
Query: 249 AAGGSSAKPSTDFHNLARELENSRGGSSCSPAQSLSSGSGSGGGGGH 295
++ + P T N GS +G GSGGGG +
Sbjct: 219 SSSSAGKTPGTGSRN---------SGSGV-------AGGGSGGGGSY 249
Score = 31.6 bits (70), Expect = 2.6
Identities = 46/177 (25%), Positives = 55/177 (31%), Gaps = 36/177 (20%)
Query: 419 GGGSSTPAAASPVGAEKLLAPRPGGPLPSRLEGGSPAR-------------------GSA 459
GG + AAASP A P G + SPAR G+
Sbjct: 7 GGAAPATAAASPAAAATEARLHPEGSSRKQQRAQSPARPRDSSLRQTIAATRSPVGAGTK 66
Query: 460 FTSVPQLGSAGSTSGGGGTG------AGAAGGAGGGQGAASDERKSAFS---QPARSFSQ 510
SV Q G TG A GG GG + A K A QP ++
Sbjct: 67 LNSVRQQQLQQQQQQGNKTGSRTGPPASIRGGGGGAEKATPLAPKGAAPGAVQPVAG-AE 125
Query: 511 LSPLVLGQKLGALEPCHPADGVGPTRLYPAAADPLAVKLQGAADLNGGCGSLPSGGG 567
+P LG P GP P + + KL L G G GGG
Sbjct: 126 AAPAATLAALGGRRP-------GPPEEPPRELESVPSKLGEPPPLGEGGGGGGEGGG 175
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 55.5 bits (132), Expect = 2e-07
Identities = 103/385 (26%), Positives = 129/385 (33%), Gaps = 50/385 (12%)
Query: 201 DHGGGGGGGKDQQQQQQEAPLGPGPKFCKAGP-LHHYPSPSPESSNPSAAAGGSSAKPST 259
D G G G + P PGP+ + P + +P P + P A G P
Sbjct: 568 DAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKA--GEKGLPGA 625
Query: 260 DFHNLARELENSRG--GSSCSPAQSLSSGS----GSGGGGGHQEAELSPDGIATGGGKGK 313
R L G G++ P + +G G+ G G Q P GG G
Sbjct: 626 PG---LRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGD 682
Query: 314 RKFPEEAAEGGGGAGLVGGRGRFVERPLPASKEDLVCTPQQYRASGSYFGLEENGRLFAP 373
+ P EA G GLVG RG ER P R S GL+ G P
Sbjct: 683 QGVPGEA----GAPGLVGPRG---ERGFPGE-----------RGSPGAQGLQ--GPRGLP 722
Query: 374 PSPETGEAKRSAFVEVKKAARAA-SLQE-EGTADGAGVASEDQDAGGGGGSSTPAAASPV 431
+P T K ++ A+ LQ G AG+A D G G A
Sbjct: 723 GTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKD 782
Query: 432 GAEKLLAP-RPGGPLPSRLEGGS-----PARGSAFTSVPQLGSAGSTSGGGGTGAGAAGG 485
G L P P GP + E G PA + P G G T G G G
Sbjct: 783 GGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAP--GERGETGPPGPAGFAGPPG 840
Query: 486 AGGGQGAASDERKSAFSQPARSFSQLSPLVLGQKLGALEPCHPADGVGPTRLYPAAADPL 545
A G GA ++ ++ A + P GA P P GP A P
Sbjct: 841 ADGQPGAKGEQGEAGQKGDAGAPGPQGP------SGAPGPQGPTGVTGPKGARGAQGPPG 894
Query: 546 AVKLQGAADLNGGCGSLPSGGGGLP 570
A GAA G GS +G G P
Sbjct: 895 ATGFPGAAGRVGPPGS--NGNPGPP 917
Score = 43.1 bits (100), Expect = 9e-04
Identities = 80/317 (25%), Positives = 96/317 (30%), Gaps = 46/317 (14%)
Query: 195 GGVGTKDHGGGGGGGKDQQQQQQEAPLGPGPKFCKAGPLHHYPSPSPESSNPSAAAGGSS 254
G G + G G Q P G G K G +P G
Sbjct: 648 GPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGER 707
Query: 255 AKPSTDFHNLARELENSRGGSSCSPAQSLSSGSGSGGGGGHQEAELSPDGIATGGGKGKR 314
P R L + G A + G+ G G Q G KG R
Sbjct: 708 GSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDR 767
Query: 315 -----KFPEEAAEGGGGAGLVGGRGRFVERPLPASKEDLVCTPQQYRASGSYFGLEENGR 369
K PE A GG GL G G P PA A+G E G
Sbjct: 768 GDVGEKGPEGAPGKDGGRGLTGPIGP----PGPAG------------ANG------EKGE 805
Query: 370 LFAPPSPETGEAKRSAFVEVKKAARAASLQEEGT--ADGA-GVASEDQDAGGGGGSSTPA 426
+ PP P R A E + G ADG G E +AG G + P
Sbjct: 806 V-GPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPG 864
Query: 427 AASPVGAEKLLAPRPGGPLPSRLEGGSPARGS----AFTSVP----QLGSAGSTSGGGGT 478
P GA PG P+ + G ARG+ T P ++G GS G
Sbjct: 865 PQGPSGA-------PGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPP 917
Query: 479 GAGAAGGAGGGQGAASD 495
G G G +GA D
Sbjct: 918 GPPGPSGKDGPKGARGD 934
Score = 38.9 bits (89), Expect = 0.016
Identities = 76/315 (24%), Positives = 94/315 (29%), Gaps = 40/315 (12%)
Query: 187 ISPQDEQGGGVGTKDHGGGGGGGKDQQQQQQEAPLGPGPKFCK--AGPLHHYPSPSPESS 244
+ P+ E+G + G G G + P GPK AGP P +
Sbjct: 695 VGPRGERGF---PGERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGM 751
Query: 245 NPSAAAGGSSAKPSTDFHNLARELENSRGGSSCSPAQSLSSGSGSGGGGGHQEAELSPDG 304
A G A P D ++ + G + G G ++ E+ P G
Sbjct: 752 PGERGAAGI-AGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPG 810
Query: 305 IATGGGKGKRKFPEEAAEGG--GGAGLVGGRGRFVERPLPASKEDLVCTPQQYRASGSYF 362
A G G R P E E G G AG G G Q A G
Sbjct: 811 PA--GSAGARGAPGERGETGPPGPAGFAGPPG----------------ADGQPGAKGEQG 852
Query: 363 GLEENGRLFAP----PSPETGEAKRSAFVEVKKAARAASLQEEGTADGAGVASEDQDAGG 418
+ G AP PS G + V K AR A G G A G
Sbjct: 853 EAGQKGDAGAPGPQGPSGAPGPQGPTG-VTGPKGARGAQ-GPPGATGFPGAAGRVGPPGS 910
Query: 419 GGGSSTPAAASPVGAEKLLAPRPGGPLPSRLEGGSPARGSAFTSVPQLGSAGSTSGGGGT 478
G P P G + GP +R + G P R G G G
Sbjct: 911 NGNPGPPGPPGPSGKD--------GPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDD 962
Query: 479 GAGAAGGAGGGQGAA 493
G A G G QG A
Sbjct: 963 GPSGAEGPPGPQGLA 977
Score = 38.5 bits (88), Expect = 0.021
Identities = 74/315 (23%), Positives = 93/315 (29%), Gaps = 43/315 (13%)
Query: 195 GGVGTKDHGGGGGGGKDQQQQQQEAPLG-PGPKFCKAGPLHHYPSPSPESSNPSAAAGGS 253
G G G G +Q + Q+ G PGP+ P P + P A G
Sbjct: 834 GFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAP---GPQGPTGVTGPKGARGAQ 890
Query: 254 SAKPSTDFHNLAREL----ENSRGGSSCSPAQSLSSG-SGSGGGGGHQEAELSPDGIATG 308
+T F A + N G P S G G+ G G P
Sbjct: 891 GPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPA 950
Query: 309 GGKGKRKFPEEAAEGG-----GGAGLVGGRGRFVERPLPASKEDLVCTPQQYRASGSYFG 363
G G++ P + G G GL G RG +V P Q R + G
Sbjct: 951 GPPGEKGEPGDDGPSGAEGPPGPQGLAGQRG-------------IVGLPGQ-RGERGFPG 996
Query: 364 LEENGRLFAPPSPETGEAKRSAFVEVKKAARAASLQEEGTADGAGVASEDQDAGGGGGSS 423
L P P K+ A + G AG + G G
Sbjct: 997 L---------PGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPG 1047
Query: 424 TPAAASPVG--AEKLLAPRPGGPLPSRLEGGSPARGSAFTSVPQLGSAGSTSGGGGTGAG 481
AA G E PG P P GSP G AG+ G +G
Sbjct: 1048 RDGAAGVKGDRGETGAVGAPGAPGPP----GSPGPAGPTGKQGDRGEAGAQGPMGPSGPA 1103
Query: 482 AAGGAGGGQGAASDE 496
A G G QG D+
Sbjct: 1104 GARGIQGPQGPRGDK 1118
Score = 35.4 bits (80), Expect = 0.18
Identities = 77/312 (24%), Positives = 96/312 (30%), Gaps = 58/312 (18%)
Query: 189 PQDEQGGGVGTKDHGGGGGGGKDQQQQQQEAPLGPGPKFCKAGPLHHYPSPSPESSNPSA 248
P EQG D G G G + + P PGP P P P P
Sbjct: 127 PAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGP-----------PGP-PGPPGPPG 174
Query: 249 AAGGSSAKPSTDFHNLARELENSRGGSSCSPAQSLSSGSGSGGGGGHQEAELSPDGIATG 308
G +A+ + F A GG+ Q G G P G A
Sbjct: 175 LGGNFAAQMAGGFDEKA-------GGAQLGVMQGPMGPMGPRG----------PPGPA-- 215
Query: 309 GGKGKRKFPEEAAEGG--GGAGLVGGRGRFVERPLPASKEDLVCTPQQYRASGSYFGLEE 366
G G + F E G G +G +G RG P P K P +G E
Sbjct: 216 GAPGPQGFQGNPGEPGEPGVSGPMGPRGP----PGPPGK------PGDDGEAGKPGKAGE 265
Query: 367 NGRLFAPPSPE--TGEAKRSAFVEVKKAARAASLQEEGTADGAGVASEDQDAGGGGGSST 424
G PP P+ G VK L +G AG ++G G + +
Sbjct: 266 RG----PPGPQGARGFPGTPGLPGVKGHRGYPGL--DGAKGEAGAPGVKGESGSPGENGS 319
Query: 425 PAAASPVGAEKLLAPR----PGGPLPSRLEGGSPARGSAFTSVPQLGSAGSTSGGGGTGA 480
P P+G L R P G +R G P V G G G G
Sbjct: 320 PG---PMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGE 376
Query: 481 GAAGGAGGGQGA 492
GA G +GA
Sbjct: 377 AGPTGARGPEGA 388
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 55.5 bits (132), Expect = 2e-07
Identities = 103/385 (26%), Positives = 129/385 (33%), Gaps = 50/385 (12%)
Query: 201 DHGGGGGGGKDQQQQQQEAPLGPGPKFCKAGP-LHHYPSPSPESSNPSAAAGGSSAKPST 259
D G G G + P PGP+ + P + +P P + P A G P
Sbjct: 499 DAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKA--GEKGLPGA 556
Query: 260 DFHNLARELENSRG--GSSCSPAQSLSSGS----GSGGGGGHQEAELSPDGIATGGGKGK 313
R L G G++ P + +G G+ G G Q P GG G
Sbjct: 557 PG---LRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGD 613
Query: 314 RKFPEEAAEGGGGAGLVGGRGRFVERPLPASKEDLVCTPQQYRASGSYFGLEENGRLFAP 373
+ P EA G GLVG RG ER P R S GL+ G P
Sbjct: 614 QGVPGEA----GAPGLVGPRG---ERGFPGE-----------RGSPGAQGLQ--GPRGLP 653
Query: 374 PSPETGEAKRSAFVEVKKAARAA-SLQE-EGTADGAGVASEDQDAGGGGGSSTPAAASPV 431
+P T K ++ A+ LQ G AG+A D G G A
Sbjct: 654 GTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKD 713
Query: 432 GAEKLLAP-RPGGPLPSRLEGGS-----PARGSAFTSVPQLGSAGSTSGGGGTGAGAAGG 485
G L P P GP + E G PA + P G G T G G G
Sbjct: 714 GGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAP--GERGETGPPGPAGFAGPPG 771
Query: 486 AGGGQGAASDERKSAFSQPARSFSQLSPLVLGQKLGALEPCHPADGVGPTRLYPAAADPL 545
A G GA ++ ++ A + P GA P P GP A P
Sbjct: 772 ADGQPGAKGEQGEAGQKGDAGAPGPQGP------SGAPGPQGPTGVTGPKGARGAQGPPG 825
Query: 546 AVKLQGAADLNGGCGSLPSGGGGLP 570
A GAA G GS +G G P
Sbjct: 826 ATGFPGAAGRVGPPGS--NGNPGPP 848
Score = 43.1 bits (100), Expect = 9e-04
Identities = 80/317 (25%), Positives = 96/317 (30%), Gaps = 46/317 (14%)
Query: 195 GGVGTKDHGGGGGGGKDQQQQQQEAPLGPGPKFCKAGPLHHYPSPSPESSNPSAAAGGSS 254
G G + G G Q P G G K G +P G
Sbjct: 579 GPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGER 638
Query: 255 AKPSTDFHNLARELENSRGGSSCSPAQSLSSGSGSGGGGGHQEAELSPDGIATGGGKGKR 314
P R L + G A + G+ G G Q G KG R
Sbjct: 639 GSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDR 698
Query: 315 -----KFPEEAAEGGGGAGLVGGRGRFVERPLPASKEDLVCTPQQYRASGSYFGLEENGR 369
K PE A GG GL G G P PA A+G E G
Sbjct: 699 GDVGEKGPEGAPGKDGGRGLTGPIGP----PGPAG------------ANG------EKGE 736
Query: 370 LFAPPSPETGEAKRSAFVEVKKAARAASLQEEGT--ADGA-GVASEDQDAGGGGGSSTPA 426
+ PP P R A E + G ADG G E +AG G + P
Sbjct: 737 V-GPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPG 795
Query: 427 AASPVGAEKLLAPRPGGPLPSRLEGGSPARGS----AFTSVP----QLGSAGSTSGGGGT 478
P GA PG P+ + G ARG+ T P ++G GS G
Sbjct: 796 PQGPSGA-------PGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPP 848
Query: 479 GAGAAGGAGGGQGAASD 495
G G G +GA D
Sbjct: 849 GPPGPSGKDGPKGARGD 865
Score = 38.9 bits (89), Expect = 0.016
Identities = 76/315 (24%), Positives = 94/315 (29%), Gaps = 40/315 (12%)
Query: 187 ISPQDEQGGGVGTKDHGGGGGGGKDQQQQQQEAPLGPGPKFCK--AGPLHHYPSPSPESS 244
+ P+ E+G + G G G + P GPK AGP P +
Sbjct: 626 VGPRGERGF---PGERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGM 682
Query: 245 NPSAAAGGSSAKPSTDFHNLARELENSRGGSSCSPAQSLSSGSGSGGGGGHQEAELSPDG 304
A G A P D ++ + G + G G ++ E+ P G
Sbjct: 683 PGERGAAGI-AGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPG 741
Query: 305 IATGGGKGKRKFPEEAAEGG--GGAGLVGGRGRFVERPLPASKEDLVCTPQQYRASGSYF 362
A G G R P E E G G AG G G Q A G
Sbjct: 742 PA--GSAGARGAPGERGETGPPGPAGFAGPPG----------------ADGQPGAKGEQG 783
Query: 363 GLEENGRLFAP----PSPETGEAKRSAFVEVKKAARAASLQEEGTADGAGVASEDQDAGG 418
+ G AP PS G + V K AR A G G A G
Sbjct: 784 EAGQKGDAGAPGPQGPSGAPGPQGPTG-VTGPKGARGAQ-GPPGATGFPGAAGRVGPPGS 841
Query: 419 GGGSSTPAAASPVGAEKLLAPRPGGPLPSRLEGGSPARGSAFTSVPQLGSAGSTSGGGGT 478
G P P G + GP +R + G P R G G G
Sbjct: 842 NGNPGPPGPPGPSGKD--------GPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDD 893
Query: 479 GAGAAGGAGGGQGAA 493
G A G G QG A
Sbjct: 894 GPSGAEGPPGPQGLA 908
Score = 38.5 bits (88), Expect = 0.021
Identities = 74/315 (23%), Positives = 93/315 (29%), Gaps = 43/315 (13%)
Query: 195 GGVGTKDHGGGGGGGKDQQQQQQEAPLG-PGPKFCKAGPLHHYPSPSPESSNPSAAAGGS 253
G G G G +Q + Q+ G PGP+ P P + P A G
Sbjct: 765 GFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAP---GPQGPTGVTGPKGARGAQ 821
Query: 254 SAKPSTDFHNLAREL----ENSRGGSSCSPAQSLSSG-SGSGGGGGHQEAELSPDGIATG 308
+T F A + N G P S G G+ G G P
Sbjct: 822 GPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPA 881
Query: 309 GGKGKRKFPEEAAEGG-----GGAGLVGGRGRFVERPLPASKEDLVCTPQQYRASGSYFG 363
G G++ P + G G GL G RG +V P Q R + G
Sbjct: 882 GPPGEKGEPGDDGPSGAEGPPGPQGLAGQRG-------------IVGLPGQ-RGERGFPG 927
Query: 364 LEENGRLFAPPSPETGEAKRSAFVEVKKAARAASLQEEGTADGAGVASEDQDAGGGGGSS 423
L P P K+ A + G AG + G G
Sbjct: 928 L---------PGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPG 978
Query: 424 TPAAASPVG--AEKLLAPRPGGPLPSRLEGGSPARGSAFTSVPQLGSAGSTSGGGGTGAG 481
AA G E PG P P GSP G AG+ G +G
Sbjct: 979 RDGAAGVKGDRGETGAVGAPGAPGPP----GSPGPAGPTGKQGDRGEAGAQGPMGPSGPA 1034
Query: 482 AAGGAGGGQGAASDE 496
A G G QG D+
Sbjct: 1035 GARGIQGPQGPRGDK 1049
Score = 35.4 bits (80), Expect = 0.18
Identities = 77/312 (24%), Positives = 96/312 (30%), Gaps = 58/312 (18%)
Query: 189 PQDEQGGGVGTKDHGGGGGGGKDQQQQQQEAPLGPGPKFCKAGPLHHYPSPSPESSNPSA 248
P EQG D G G G + + P PGP P P P P
Sbjct: 58 PAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGP-----------PGP-PGPPGPPG 105
Query: 249 AAGGSSAKPSTDFHNLARELENSRGGSSCSPAQSLSSGSGSGGGGGHQEAELSPDGIATG 308
G +A+ + F A GG+ Q G G P G A
Sbjct: 106 LGGNFAAQMAGGFDEKA-------GGAQLGVMQGPMGPMGPRG----------PPGPA-- 146
Query: 309 GGKGKRKFPEEAAEGG--GGAGLVGGRGRFVERPLPASKEDLVCTPQQYRASGSYFGLEE 366
G G + F E G G +G +G RG P P K P +G E
Sbjct: 147 GAPGPQGFQGNPGEPGEPGVSGPMGPRGP----PGPPGK------PGDDGEAGKPGKAGE 196
Query: 367 NGRLFAPPSPE--TGEAKRSAFVEVKKAARAASLQEEGTADGAGVASEDQDAGGGGGSST 424
G PP P+ G VK L +G AG ++G G + +
Sbjct: 197 RG----PPGPQGARGFPGTPGLPGVKGHRGYPGL--DGAKGEAGAPGVKGESGSPGENGS 250
Query: 425 PAAASPVGAEKLLAPR----PGGPLPSRLEGGSPARGSAFTSVPQLGSAGSTSGGGGTGA 480
P P+G L R P G +R G P V G G G G
Sbjct: 251 PG---PMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGE 307
Query: 481 GAAGGAGGGQGA 492
GA G +GA
Sbjct: 308 AGPTGARGPEGA 319
>gi|89257348 homeo box HB9 [Homo sapiens]
Length = 401
Score = 55.1 bits (131), Expect = 2e-07
Identities = 52/151 (34%), Positives = 63/151 (41%), Gaps = 32/151 (21%)
Query: 455 ARGSAFTSVPQLGSAGSTSGGGGTGAGAAGGAGGGQGAASDERKSAFSQPARSFSQLSPL 514
A+ + V L +A S +GGGG G GA+GG G AS E +A + R+ S P
Sbjct: 23 AQSAPLALVTSLAAAASGTGGGGGGGGASGGTSGSCSPASSEPPAAPADRLRAESPSPPR 82
Query: 515 VLGQKLGALEPCHPADGVGPTRLYPAAADPLAVKLQGAADLNGGCGSLPSGGGGLPKQSP 574
+L L P G GA GG G GG G P
Sbjct: 83 LLAAHCALL----PKPG-----------------FLGAGGGGGGTG----GGHGGPHHHA 117
Query: 575 FLYATAFWPKSSAAAAAAAAAAAAGPLQLQL 605
P ++AAAAAAAAAAAAG L L L
Sbjct: 118 H-------PGAAAAAAAAAAAAAAGGLALGL 141
Score = 48.5 bits (114), Expect = 2e-05
Identities = 66/214 (30%), Positives = 81/214 (37%), Gaps = 58/214 (27%)
Query: 387 VEVKKAARAASLQEEGTADGAGVASEDQDAGGGGGSS--TPAAASPVGAEKLLAP----R 440
V+ +AA A S A AS GGGGG+S T + SP +E AP R
Sbjct: 15 VDPPRAASAQSAPLALVTSLAAAASGTGGGGGGGGASGGTSGSCSPASSEPPAAPADRLR 74
Query: 441 PGGPLPSRLEGGSPARGSAFTSVPQLGSAGSTSGGGGTGAGAAGGAGGGQGAASDERKSA 500
P P RL A +P+ G G+ GGGGTG GG GG A +A
Sbjct: 75 AESPSPPRLLAAHCA------LLPKPGFLGAGGGGGGTG----GGHGGPHHHAHPGAAAA 124
Query: 501 FSQPARSFSQLSPLVLGQKLGALEPCHPADGVGPTRLYPAAADPLAVKLQGAADLNGGCG 560
+ A + AAA LA+ L GG
Sbjct: 125 AAAAAAA--------------------------------AAAGGLALGLH-----PGGA- 146
Query: 561 SLPSGGGGLPKQSPFLYATAFWPKSSAAAAAAAA 594
GG GLP Q+ LY + S+AAAAAA A
Sbjct: 147 ---QGGAGLPAQAA-LYGHPVYGYSAAAAAAALA 176
>gi|71274144 AT hook, DNA binding motif, containing 1 [Homo sapiens]
Length = 1603
Score = 55.1 bits (131), Expect = 2e-07
Identities = 106/365 (29%), Positives = 127/365 (34%), Gaps = 98/365 (26%)
Query: 285 SGSGSGGGGGH--QEAELSPDGIATGGGKGKRKFPEEAAEGGGGAGLVG-------GRGR 335
+G G GGGH + A S G GK K+K AA G GG GL GRG
Sbjct: 672 AGGFGGRGGGHAAKSARCSFSDFFEGIGK-KKKVVAVAAAGVGGPGLTELGHPRKRGRGE 730
Query: 336 FVERPLPASKEDLVCTPQQYRASGSYFGLEENGRLF---APPSPETGEAKRSAFVEVKKA 392
+ + P++ R S +NG LF P P GEA
Sbjct: 731 V---------DAVTGKPKRKRRS------RKNGTLFPEQVPSGPGFGEAG---------- 765
Query: 393 ARAASLQEEGTADGAGVASEDQDAGGGGGSSTPAAASPVGAEKLLAPRPGGPLPSRLEGG 452
A+ AG D GGG AP G P GG
Sbjct: 766 -----------AEWAG------DKGGGW-----------------APHHGHP------GG 785
Query: 453 SPARGSAF--TSVPQLGSAGSTSGGGGTGAGAAGGAGGGQGAASDERKSAFSQPARSF-- 508
R F T S G SG G G+ + GA GQ S ER++ F+ RS
Sbjct: 786 QAGRNCGFQGTEARAFASTGLESGASGRGSYYSTGAPSGQTELSQERQNLFTGYFRSLLD 845
Query: 509 SQLSPLVLGQKLGALEP-CHPADGV---GPTRLYPAAADPLAVKLQGAADLNGGCGSLPS 564
S S +L L A P A G PT PA +GA GS S
Sbjct: 846 SDDSSDLLDFALSASRPESRKASGTYAGPPTSALPAQRGLATFPSRGAKASPVAVGS--S 903
Query: 565 GGGGLPKQSPFLYATAFWPKSSAA------AAAAAAAAAAGPLQLQLPSAL----TLLPP 614
G G P P L A +P AA AA+ AA P + PSA+ T PP
Sbjct: 904 GAGADPSFQPVLSARQTFPPGRAASYGLTPAASDCRAAETFPKLVPPPSAMARSPTTHPP 963
Query: 615 SFTSL 619
+ T L
Sbjct: 964 ANTYL 968
Score = 36.2 bits (82), Expect = 0.10
Identities = 37/126 (29%), Positives = 51/126 (40%), Gaps = 14/126 (11%)
Query: 411 SEDQDAGGGGGSSTPAAASPVGAEKLLAPRPGGPL--PSRL-----EGGSPARGSAFTSV 463
S+D G G+S PA+ S + P GGP PS+ G+P GSA T +
Sbjct: 995 SKDCSFAYGSGNSLPASPSSAHSAGYAPPPTGGPCLPPSKASFFSSSEGAPFSGSAPTPL 1054
Query: 464 PQLGSAGSTSGGG-----GTGAGAAGGAGGGQGAASDERKSAFSQPARSFSQLSPLVLGQ 518
A + S GG GT A A A ++S + S + R F+ S Q
Sbjct: 1055 RCDSRASTVSPGGYMVPKGTTASATSAASAASSSSSSFQPS--PENCRQFAGASQWPFRQ 1112
Query: 519 KLGALE 524
G L+
Sbjct: 1113 GYGGLD 1118
>gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens]
Length = 2285
Score = 54.3 bits (129), Expect = 4e-07
Identities = 104/378 (27%), Positives = 135/378 (35%), Gaps = 51/378 (13%)
Query: 246 PSAAAG-GSSAKPSTDFHNLARELENSRGGSSCSPAQSLSSGSGSGGGGGHQEAELSPDG 304
P+AA+ G+ P A + + G + A + G G QE+E G
Sbjct: 7 PAAASSLGNPPPPPPSELKKAEQQQREEAGGEAAAAAAAERGEMKAAAG--QESEGPAVG 64
Query: 305 IATGGGKGKRKFPEEAAEGGGGA-GLVGGRGRFVE--------RPLPASKEDLVCTPQQY 355
GK + E GGGG G GG G + P PA +L P
Sbjct: 65 PPQPLGKELQDGAESNGGGGGGGAGSGGGPGAEPDLKNSNGNAGPRPALNNNLT-EPPGG 123
Query: 356 RASGSYFGL----EENGRLFAPPSPETGEAKRSAFVEVKKAARAASLQEEGTADGAGVAS 411
GS G+ PP+ G+ + V AA A Q+ G G+A+
Sbjct: 124 GGGGSSDGVGAPPHSAAAALPPPAYGFGQPYGRSPSAVAAAAAAVFHQQHGGQQSPGLAA 183
Query: 412 EDQDAGGGGGSSTPAAASPVGAEKLLAP--RPGGPLPSRLEGGSPARGSAFTSVPQLGSA 469
GGGG P A + P + P+R PA A
Sbjct: 184 LQ---SGGGGGLEPYAGPQQNSHDHGFPNHQYNSYYPNRSAYPPPAPAYAL--------- 231
Query: 470 GSTSGGGGTGAGAAGGAGGGQGAASDERKSAFSQPARSFSQLSPLVLGQKLGALEPCHP- 528
S+ GG G+GAA AG +S S+ S SF+Q Q+ GA+ P
Sbjct: 232 -SSPRGGTPGSGAAAAAGSKPPPSSSASASSSSS---SFAQ-------QRFGAMGGGGPS 280
Query: 529 -ADGVGPTRLYPAAADPLAVKLQGAADLNGGCGSLPSGG---GGLPKQSPFLYATAFWPK 584
A G P + L A G G SGG GG K P A+ W
Sbjct: 281 AAGGGTPQPTATPTLNQLLTSPSSARGYQGYPGGDYSGGPQDGGAGK-GPADMASQCW-- 337
Query: 585 SSAAAAAAAAAAAAGPLQ 602
AAAAAAAAAAA+G Q
Sbjct: 338 -GAAAAAAAAAAASGGAQ 354
Score = 50.4 bits (119), Expect = 5e-06
Identities = 108/443 (24%), Positives = 146/443 (32%), Gaps = 91/443 (20%)
Query: 198 GTKDHGGGGGGGKDQQQQQQEAPLGPGPKFCKAGPLHHYPSPSPESSNPSAAAGGSSAKP 257
G + +GGGGGGG A G GP P ++SN G + +P
Sbjct: 76 GAESNGGGGGGG---------AGSGGGPG----------AEPDLKNSN-----GNAGPRP 111
Query: 258 STDFHNLARELENSRGGSS---CSPAQSLSSGSGSGGGGGHQEAELSPDGIATGGG---- 310
+ + +NL GGSS +P S ++ G Q SP +A
Sbjct: 112 ALN-NNLTEPPGGGGGGSSDGVGAPPHSAAAALPPPAYGFGQPYGRSPSAVAAAAAAVFH 170
Query: 311 --KGKRKFPEEAA-EGGGGAGLVGGRGRFVERPLPASKEDLVCTPQQYRASGSYFGLEEN 367
G ++ P AA + GGG GL G + D QY SY+ N
Sbjct: 171 QQHGGQQSPGLAALQSGGGGGLEPYAGP------QQNSHDHGFPNHQY---NSYY---PN 218
Query: 368 GRLFAPPSPETGEAKRSAFVEVKKAARAASLQEEGTADGAGVASEDQDA-------GGGG 420
+ PP+P + AA AA + ++ + +S A GGGG
Sbjct: 219 RSAYPPPAPAYALSSPRGGTPGSGAAAAAGSKPPPSSSASASSSSSSFAQQRFGAMGGGG 278
Query: 421 ----GSSTPAAASPVGAEKLLAPRPGGPLPSRLEGGSPARGSAFTSVPQLGSAG------ 470
G TP + +LL PS G G ++ PQ G AG
Sbjct: 279 PSAAGGGTPQPTATPTLNQLLTS------PSSARGYQGYPGGDYSGGPQDGGAGKGPADM 332
Query: 471 -STSGGGGTGAGAAGGAGGGQGAASDERKSAFSQPARSFSQLSPLVLGQKLGALEPCHPA 529
S G A AA A GG A A P S PL +P P
Sbjct: 333 ASQCWGAAAAAAAAAAASGG---AQQRSHHAPMSPGSSGGGGQPLA-----RTPQPSSPM 384
Query: 530 DGVGPTRLYPAAADPLAVKLQGAADLNGGCGSLPSGGGGLP-----KQSPFLYATAFWPK 584
D +G R P + QG S P G G P Q+P Y +
Sbjct: 385 DQMGKMRPQPYGGTNPYSQQQGPP-------SGPQQGHGYPGQPYGSQTPQRYPMTMQGR 437
Query: 585 SSAAAAAAAAAAAAGPLQLQLPS 607
+ +A + P Q PS
Sbjct: 438 AQSAMGGLSYTQQIPPYGQQGPS 460
>gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens]
Length = 2068
Score = 54.3 bits (129), Expect = 4e-07
Identities = 104/378 (27%), Positives = 135/378 (35%), Gaps = 51/378 (13%)
Query: 246 PSAAAG-GSSAKPSTDFHNLARELENSRGGSSCSPAQSLSSGSGSGGGGGHQEAELSPDG 304
P+AA+ G+ P A + + G + A + G G QE+E G
Sbjct: 7 PAAASSLGNPPPPPPSELKKAEQQQREEAGGEAAAAAAAERGEMKAAAG--QESEGPAVG 64
Query: 305 IATGGGKGKRKFPEEAAEGGGGA-GLVGGRGRFVE--------RPLPASKEDLVCTPQQY 355
GK + E GGGG G GG G + P PA +L P
Sbjct: 65 PPQPLGKELQDGAESNGGGGGGGAGSGGGPGAEPDLKNSNGNAGPRPALNNNLT-EPPGG 123
Query: 356 RASGSYFGL----EENGRLFAPPSPETGEAKRSAFVEVKKAARAASLQEEGTADGAGVAS 411
GS G+ PP+ G+ + V AA A Q+ G G+A+
Sbjct: 124 GGGGSSDGVGAPPHSAAAALPPPAYGFGQPYGRSPSAVAAAAAAVFHQQHGGQQSPGLAA 183
Query: 412 EDQDAGGGGGSSTPAAASPVGAEKLLAP--RPGGPLPSRLEGGSPARGSAFTSVPQLGSA 469
GGGG P A + P + P+R PA A
Sbjct: 184 LQ---SGGGGGLEPYAGPQQNSHDHGFPNHQYNSYYPNRSAYPPPAPAYAL--------- 231
Query: 470 GSTSGGGGTGAGAAGGAGGGQGAASDERKSAFSQPARSFSQLSPLVLGQKLGALEPCHP- 528
S+ GG G+GAA AG +S S+ S SF+Q Q+ GA+ P
Sbjct: 232 -SSPRGGTPGSGAAAAAGSKPPPSSSASASSSSS---SFAQ-------QRFGAMGGGGPS 280
Query: 529 -ADGVGPTRLYPAAADPLAVKLQGAADLNGGCGSLPSGG---GGLPKQSPFLYATAFWPK 584
A G P + L A G G SGG GG K P A+ W
Sbjct: 281 AAGGGTPQPTATPTLNQLLTSPSSARGYQGYPGGDYSGGPQDGGAGK-GPADMASQCW-- 337
Query: 585 SSAAAAAAAAAAAAGPLQ 602
AAAAAAAAAAA+G Q
Sbjct: 338 -GAAAAAAAAAAASGGAQ 354
Score = 50.4 bits (119), Expect = 5e-06
Identities = 108/443 (24%), Positives = 146/443 (32%), Gaps = 91/443 (20%)
Query: 198 GTKDHGGGGGGGKDQQQQQQEAPLGPGPKFCKAGPLHHYPSPSPESSNPSAAAGGSSAKP 257
G + +GGGGGGG A G GP P ++SN G + +P
Sbjct: 76 GAESNGGGGGGG---------AGSGGGPG----------AEPDLKNSN-----GNAGPRP 111
Query: 258 STDFHNLARELENSRGGSS---CSPAQSLSSGSGSGGGGGHQEAELSPDGIATGGG---- 310
+ + +NL GGSS +P S ++ G Q SP +A
Sbjct: 112 ALN-NNLTEPPGGGGGGSSDGVGAPPHSAAAALPPPAYGFGQPYGRSPSAVAAAAAAVFH 170
Query: 311 --KGKRKFPEEAA-EGGGGAGLVGGRGRFVERPLPASKEDLVCTPQQYRASGSYFGLEEN 367
G ++ P AA + GGG GL G + D QY SY+ N
Sbjct: 171 QQHGGQQSPGLAALQSGGGGGLEPYAGP------QQNSHDHGFPNHQY---NSYY---PN 218
Query: 368 GRLFAPPSPETGEAKRSAFVEVKKAARAASLQEEGTADGAGVASEDQDA-------GGGG 420
+ PP+P + AA AA + ++ + +S A GGGG
Sbjct: 219 RSAYPPPAPAYALSSPRGGTPGSGAAAAAGSKPPPSSSASASSSSSSFAQQRFGAMGGGG 278
Query: 421 ----GSSTPAAASPVGAEKLLAPRPGGPLPSRLEGGSPARGSAFTSVPQLGSAG------ 470
G TP + +LL PS G G ++ PQ G AG
Sbjct: 279 PSAAGGGTPQPTATPTLNQLLTS------PSSARGYQGYPGGDYSGGPQDGGAGKGPADM 332
Query: 471 -STSGGGGTGAGAAGGAGGGQGAASDERKSAFSQPARSFSQLSPLVLGQKLGALEPCHPA 529
S G A AA A GG A A P S PL +P P
Sbjct: 333 ASQCWGAAAAAAAAAAASGG---AQQRSHHAPMSPGSSGGGGQPLA-----RTPQPSSPM 384
Query: 530 DGVGPTRLYPAAADPLAVKLQGAADLNGGCGSLPSGGGGLP-----KQSPFLYATAFWPK 584
D +G R P + QG S P G G P Q+P Y +
Sbjct: 385 DQMGKMRPQPYGGTNPYSQQQGPP-------SGPQQGHGYPGQPYGSQTPQRYPMTMQGR 437
Query: 585 SSAAAAAAAAAAAAGPLQLQLPS 607
+ +A + P Q PS
Sbjct: 438 AQSAMGGLSYTQQIPPYGQQGPS 460
>gi|147905620 PR domain containing 9 [Homo sapiens]
Length = 894
Score = 53.9 bits (128), Expect = 5e-07
Identities = 31/64 (48%), Positives = 37/64 (57%), Gaps = 7/64 (10%)
Query: 70 YIFRVDTSAANGSSEGLMWLRLVQSARDKEEQNLEAYIKNGQLFYRSLRRIAKDEELLVW 129
Y+ D S AN W+R V ARD EEQNL A+ + Q+FYR+ R I ELLVW
Sbjct: 304 YVDGKDKSWAN-------WMRYVNCARDDEEQNLVAFQYHRQIFYRTCRVIRPGCELLVW 356
Query: 130 YGKE 133
YG E
Sbjct: 357 YGDE 360
Score = 37.4 bits (85), Expect = 0.047
Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 15/77 (19%)
Query: 627 CAKCNASFRMTSDLVYHMRSHH-KKEYAMEP----------LVKRRR----EEKLKCPIC 671
C +C FR S+L+ H R+H +K Y L++ +R E+ C C
Sbjct: 778 CRECGRGFRDKSNLLSHQRTHTGEKPYVCRECGRGFSNKSHLLRHQRTHTGEKPYVCREC 837
Query: 672 NESFRERHHLSRHMTSH 688
FR + HL RH +H
Sbjct: 838 GRGFRNKSHLLRHQRTH 854
Score = 35.4 bits (80), Expect = 0.18
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 13/62 (20%)
Query: 627 CAKCNASFRMTSDLVYHMRSHHKKEYAMEPLVKRRREEKLKCPICNESFRERHHLSRHMT 686
C +C F S L+ H R+H E+ C C FR++ HL RH
Sbjct: 722 CRECGRGFSNKSHLLRHQRTH-------------TGEKPYVCRECGRGFRDKSHLLRHQR 768
Query: 687 SH 688
+H
Sbjct: 769 TH 770
Score = 32.0 bits (71), Expect = 2.0
Identities = 17/62 (27%), Positives = 23/62 (37%), Gaps = 13/62 (20%)
Query: 627 CAKCNASFRMTSDLVYHMRSHHKKEYAMEPLVKRRREEKLKCPICNESFRERHHLSRHMT 686
C +C F S L+ H R+H E+ C C F + HL RH
Sbjct: 694 CRECGRGFSWQSVLLTHQRTH-------------TGEKPYVCRECGRGFSNKSHLLRHQR 740
Query: 687 SH 688
+H
Sbjct: 741 TH 742
>gi|166795264 AE binding protein 2 isoform b [Homo sapiens]
Length = 517
Score = 53.9 bits (128), Expect = 5e-07
Identities = 48/144 (33%), Positives = 60/144 (41%), Gaps = 16/144 (11%)
Query: 195 GGVGTKDHGGGGGGGKDQQQQQQEAPLGPGPKFC-KAGPLHHYPSPSPESSNPSAAAGGS 253
GG G GGGGGGG + E P P+ +AG E + S+++GG
Sbjct: 61 GGSG----GGGGGGGGGVGGGEAETMSEPSPESASQAGEDEDEEEDDEEEEDESSSSGGG 116
Query: 254 SAKPSTDFHNLARELENSRGGSSCSPAQSLSSG---SGSGGGGGHQ--EAELSPDGIATG 308
+ S A L S GGSS +SLS G S SG G G + E P G G
Sbjct: 117 EEESS------AESLVGSSGGSSSDETRSLSPGAASSSSGDGDGKEGLEEPKGPRGSQGG 170
Query: 309 GGKGKRKFPEEAAEGGGGAGLVGG 332
GG G ++ G G G GG
Sbjct: 171 GGGGSSSSSVVSSGGDEGYGTGGG 194
Score = 47.8 bits (112), Expect = 3e-05
Identities = 64/258 (24%), Positives = 92/258 (35%), Gaps = 63/258 (24%)
Query: 238 SPSPESSNPSAAAGGSSAKPSTDFHNLARELENSRGGSSCSPAQSLSSGSGSGGGGGHQE 297
SP P S P +AA G + P + E E + +L GSGGGGG
Sbjct: 18 SPLPPGS-PGSAARGRAEPPEEE-----EEEEEEEEEAEAEAVAALLLNGGSGGGGG--- 68
Query: 298 AELSPDGIATGGGKGKRKFPEEAAEGGGGAGLVGGRGRFVERPLPASKEDLVCTPQQYRA 357
GGG G+ GG + P P S
Sbjct: 69 --------------------------GGGGGVGGGEAETMSEPSPES------------- 89
Query: 358 SGSYFGLEENGRLFAPPSPETGEAKRSAFVEVKKAARAASLQEEGTADGAGVASEDQDAG 417
S G +E+ E E+ S E + +A E +G +S D+
Sbjct: 90 -ASQAGEDEDEE--EDDEEEEDESSSSGGGEEESSA-------ESLVGSSGGSSSDETRS 139
Query: 418 GGGGSSTPAAASPVGAEKLLAPRPGGPLPSRLEGGSPARGSAFTSVPQLGSAGSTSGGGG 477
G+++ ++ G E L P+ GP S +GG S+ + V G G +GGGG
Sbjct: 140 LSPGAASSSSGDGDGKEGLEEPK--GPRGS--QGGGGGGSSSSSVVSSGGDEGYGTGGGG 195
Query: 478 TGAGAAGGAGGGQGAASD 495
+ A +GG G +SD
Sbjct: 196 SSA-TSGGRRGSLEMSSD 212
Score = 44.3 bits (103), Expect = 4e-04
Identities = 77/358 (21%), Positives = 121/358 (33%), Gaps = 49/358 (13%)
Query: 364 LEENGRLFAPPSPETGEAKRSAFVEVKKAARAASLQEEGTADGAGVASEDQDAGGGGGSS 423
LEE RL P G A R ++ +EE A+ + +GGGGG
Sbjct: 11 LEELSRLSPLPPGSPGSAARGRAEPPEEEEEEEEEEEEAEAEAVAALLLNGGSGGGGGGG 70
Query: 424 TPAAASPVGAEKLLAPRPGGPLPSRLEGGSPARGSAFTSVPQLGSAGSTSGGGGTGAGAA 483
AE + P P S + G + S+SGGG + A
Sbjct: 71 GGGVGGG-EAETMSEPSP----ESASQAGEDEDEEEDDEEEE--DESSSSGGGEEESSAE 123
Query: 484 GGAGGGQGAASDERKSAFSQPARSFSQLSPLVLGQKLGALEPCHPADGVGPTRLYPAAAD 543
G G++SDE +S A S S K G EP P G +++
Sbjct: 124 SLVGSSGGSSSDETRSLSPGAASSSSGDG----DGKEGLEEPKGPRGSQGGGGGGSSSSS 179
Query: 544 PLAVKLQGAADLNGGCGSLPSGG--GGLPKQSPFLYATAFWPKSSAAAA-----AAAAAA 596
++ GG S SGG G L S + + S ++ + ++
Sbjct: 180 VVSSGGDEGYGTGGGGSSATSGGRRGSLEMSSDGEPLSRMDSEDSISSTIMDVDSTISSG 239
Query: 597 AAGPLQLQLPSALTLLPPSFTSLCLPAQNWCAKCNASFRMTSDLVYHMRSHH-------- 648
+ P + + T + C W +C A F + DL H+RS H
Sbjct: 240 RSTPAMMNGQGSTTSSSKNIAYNCC----W-DQCQACFNSSPDLADHIRSIHVDGQRGGV 294
Query: 649 ----------------KKEYAMEPLVKRRREEKLKCPI--CNESFRERHHLSRHMTSH 688
+ + ++ ++ KC + CN SF + L+RH+ +H
Sbjct: 295 FVCLWKGCKVYNTPSTSQSWLQRHMLTHSGDKPFKCVVGGCNASFASQGGLARHVPTH 352
>gi|166795262 AE binding protein 2 isoform a [Homo sapiens]
Length = 503
Score = 53.9 bits (128), Expect = 5e-07
Identities = 48/144 (33%), Positives = 60/144 (41%), Gaps = 16/144 (11%)
Query: 195 GGVGTKDHGGGGGGGKDQQQQQQEAPLGPGPKFC-KAGPLHHYPSPSPESSNPSAAAGGS 253
GG G GGGGGGG + E P P+ +AG E + S+++GG
Sbjct: 61 GGSG----GGGGGGGGGVGGGEAETMSEPSPESASQAGEDEDEEEDDEEEEDESSSSGGG 116
Query: 254 SAKPSTDFHNLARELENSRGGSSCSPAQSLSSG---SGSGGGGGHQ--EAELSPDGIATG 308
+ S A L S GGSS +SLS G S SG G G + E P G G
Sbjct: 117 EEESS------AESLVGSSGGSSSDETRSLSPGAASSSSGDGDGKEGLEEPKGPRGSQGG 170
Query: 309 GGKGKRKFPEEAAEGGGGAGLVGG 332
GG G ++ G G G GG
Sbjct: 171 GGGGSSSSSVVSSGGDEGYGTGGG 194
Score = 47.8 bits (112), Expect = 3e-05
Identities = 64/258 (24%), Positives = 92/258 (35%), Gaps = 63/258 (24%)
Query: 238 SPSPESSNPSAAAGGSSAKPSTDFHNLARELENSRGGSSCSPAQSLSSGSGSGGGGGHQE 297
SP P S P +AA G + P + E E + +L GSGGGGG
Sbjct: 18 SPLPPGS-PGSAARGRAEPPEEE-----EEEEEEEEEAEAEAVAALLLNGGSGGGGG--- 68
Query: 298 AELSPDGIATGGGKGKRKFPEEAAEGGGGAGLVGGRGRFVERPLPASKEDLVCTPQQYRA 357
GGG G+ GG + P P S
Sbjct: 69 --------------------------GGGGGVGGGEAETMSEPSPES------------- 89
Query: 358 SGSYFGLEENGRLFAPPSPETGEAKRSAFVEVKKAARAASLQEEGTADGAGVASEDQDAG 417
S G +E+ E E+ S E + +A E +G +S D+
Sbjct: 90 -ASQAGEDEDEE--EDDEEEEDESSSSGGGEEESSA-------ESLVGSSGGSSSDETRS 139
Query: 418 GGGGSSTPAAASPVGAEKLLAPRPGGPLPSRLEGGSPARGSAFTSVPQLGSAGSTSGGGG 477
G+++ ++ G E L P+ GP S +GG S+ + V G G +GGGG
Sbjct: 140 LSPGAASSSSGDGDGKEGLEEPK--GPRGS--QGGGGGGSSSSSVVSSGGDEGYGTGGGG 195
Query: 478 TGAGAAGGAGGGQGAASD 495
+ A +GG G +SD
Sbjct: 196 SSA-TSGGRRGSLEMSSD 212
Score = 44.3 bits (103), Expect = 4e-04
Identities = 77/358 (21%), Positives = 121/358 (33%), Gaps = 49/358 (13%)
Query: 364 LEENGRLFAPPSPETGEAKRSAFVEVKKAARAASLQEEGTADGAGVASEDQDAGGGGGSS 423
LEE RL P G A R ++ +EE A+ + +GGGGG
Sbjct: 11 LEELSRLSPLPPGSPGSAARGRAEPPEEEEEEEEEEEEAEAEAVAALLLNGGSGGGGGGG 70
Query: 424 TPAAASPVGAEKLLAPRPGGPLPSRLEGGSPARGSAFTSVPQLGSAGSTSGGGGTGAGAA 483
AE + P P S + G + S+SGGG + A
Sbjct: 71 GGGVGGG-EAETMSEPSP----ESASQAGEDEDEEEDDEEEE--DESSSSGGGEEESSAE 123
Query: 484 GGAGGGQGAASDERKSAFSQPARSFSQLSPLVLGQKLGALEPCHPADGVGPTRLYPAAAD 543
G G++SDE +S A S S K G EP P G +++
Sbjct: 124 SLVGSSGGSSSDETRSLSPGAASSSSGDG----DGKEGLEEPKGPRGSQGGGGGGSSSSS 179
Query: 544 PLAVKLQGAADLNGGCGSLPSGG--GGLPKQSPFLYATAFWPKSSAAAA-----AAAAAA 596
++ GG S SGG G L S + + S ++ + ++
Sbjct: 180 VVSSGGDEGYGTGGGGSSATSGGRRGSLEMSSDGEPLSRMDSEDSISSTIMDVDSTISSG 239
Query: 597 AAGPLQLQLPSALTLLPPSFTSLCLPAQNWCAKCNASFRMTSDLVYHMRSHH-------- 648
+ P + + T + C W +C A F + DL H+RS H
Sbjct: 240 RSTPAMMNGQGSTTSSSKNIAYNCC----W-DQCQACFNSSPDLADHIRSIHVDGQRGGV 294
Query: 649 ----------------KKEYAMEPLVKRRREEKLKCPI--CNESFRERHHLSRHMTSH 688
+ + ++ ++ KC + CN SF + L+RH+ +H
Sbjct: 295 FVCLWKGCKVYNTPSTSQSWLQRHMLTHSGDKPFKCVVGGCNASFASQGGLARHVPTH 352
>gi|30179900 SRY (sex determining region Y)-box 1 [Homo sapiens]
Length = 391
Score = 53.1 bits (126), Expect = 8e-07
Identities = 96/365 (26%), Positives = 131/365 (35%), Gaps = 97/365 (26%)
Query: 270 NSRGGSSCSPAQSLSSGSGSGGGGGHQEAELSPDGIATGGGKGKRKFPEEAAEGGGGAGL 329
+S GG+ S +G+G GGGGG GG GGGG G
Sbjct: 11 HSPGGAQAPTNLSGPAGAGGGGGGG-------------GG-------------GGGGGGA 44
Query: 330 VGGRGRFVERPLPASKEDLVCTPQQYRASGSYFGLEENGRLFAPPSPE---TGEAKRSAF 386
+ R V+RP+ A +V + Q R N + E EA++ F
Sbjct: 45 KANQDR-VKRPMNAF---MVWSRGQRRKMAQENPKMHNSEISKRLGAEWKVMSEAEKRPF 100
Query: 387 VEVKKAARAASLQEEG--------------TADGAGVASEDQDAGGGGGSSTPAAASPVG 432
++ K RA ++E D +A AG GGG + A VG
Sbjct: 101 IDEAKRLRALHMKEHPDYKYRPRRKTKTLLKKDKYSLAGGLLAAGAGGGGAAVAMGVGVG 160
Query: 433 AEKLLAPRPGGPLPSRLEGGSPARGSAFTSVPQLGSAGSTSGGGGTGA-GAAGGAGGGQG 491
G+ A G +L S G +GGG G A GA G
Sbjct: 161 V------------------GAAAVGQ------RLESPGGAAGGGYAHVNGWANGAYPGSV 196
Query: 492 AASDERKSAFSQPARSFSQLSPLVLGQKLGA------LEPCHPADGVGPTRLYPAAADPL 545
AA + A + Q + L GQ GA P HP +P P+
Sbjct: 197 AA--------AAAAAAMMQEAQLAYGQHPGAGGAHPHAHPAHPHP--HHPHAHPHNPQPM 246
Query: 546 ------AVKLQGAADLNGGCGSLPSGGGGLPKQSPFLYATA---FWPKSSAAAAAAAAAA 596
A++ ++ G + PSG GGLP + A A S+ AAAAAAAAA
Sbjct: 247 HRYDMGALQYSPISNSQGYMSASPSGYGGLPYGAAAAAAAAAGGAHQNSAVAAAAAAAAA 306
Query: 597 AAGPL 601
++G L
Sbjct: 307 SSGAL 311
>gi|148271100 PR domain containing 7 isoform 1 [Homo sapiens]
Length = 492
Score = 52.4 bits (124), Expect = 1e-06
Identities = 36/102 (35%), Positives = 50/102 (49%), Gaps = 9/102 (8%)
Query: 34 DIPENAIFGPCV--LSHTSLYDSIAFIALKSTDKRTVPYIFRVDTSAANGSSEGLMWLRL 91
D+P FGP ++ + + L + + Y+ D S+AN W+R
Sbjct: 266 DLPLGLHFGPYEGRITEDEEAANSGYSWLITKGRNCYEYVDGKDKSSAN-------WMRY 318
Query: 92 VQSARDKEEQNLEAYIKNGQLFYRSLRRIAKDEELLVWYGKE 133
V ARD EEQNL A+ + Q+FYR+ R I ELLVW G E
Sbjct: 319 VNCARDDEEQNLVAFQYHRQIFYRTCRVIRPGCELLVWSGDE 360
>gi|115334682 SNAP25-interacting protein [Homo sapiens]
Length = 1183
Score = 52.4 bits (124), Expect = 1e-06
Identities = 101/395 (25%), Positives = 137/395 (34%), Gaps = 81/395 (20%)
Query: 265 ARELENSRGGSSCSPAQSLSSGSG-----SGGGGGHQEAELSPDGIATGGGKGKRKFPE- 318
+RE +R ++ SPA L+SGS SG G Q S ++ GG+
Sbjct: 285 SRESSPTRRLNNLSPAPHLASGSPPPGLPSGLPSGLQSGSPSRSRLSYAGGRPPSYAGSP 344
Query: 319 --EAAEGGGGA----GLVGGRGRFVERPLPASKEDLVCTPQQY---RASGSY---FGLEE 366
AAE GGA G+ +ER EDL + G Y +GL
Sbjct: 345 VHHAAERLGGAPAAQGVSPSPSAILERRDVKPDEDLASKAGGMVLVKGEGLYADPYGLLH 404
Query: 367 NGRLFAPPSPETGEAKRSAFVEVKKAARAASLQEEGTADGAGVASEDQD-----AGGGG- 420
GRL S A+ + S++ T A + S+ +D AGGGG
Sbjct: 405 EGRL----SLAAAAGDPFAYPGAGGLYKRGSVRSLSTYSAAALQSDLEDSLYKAAGGGGP 460
Query: 421 ------GSSTPAAASPVGAEKLLAPRPGGPLPSRLEGGSPARG--------------SAF 460
G P + SP + AP G P P G P+RG S F
Sbjct: 461 LYGDGYGFRLPPS-SPQKLADVAAPPGGPPPPHSPYSGPPSRGSPVRQSFRKDSGSSSVF 519
Query: 461 TSVP--QLGSAGSTSGGG--------GTGAGAAGGAGGGQGAASDERKSAFSQPARSFSQ 510
P + SAGS S G G G + G G A E + + +
Sbjct: 520 AESPGGKTRSAGSASTAGAPPSELFPGPGERSLVGFGPPVPAKDTETRERMEAMEKQIAS 579
Query: 511 LSPLVLGQKLGALEPCHPADGVGPTRLYPAAADPLAVKLQGAADLNGGCGSLPSGGGGLP 570
L+ LV L EP P++ + + GAA + CGS G P
Sbjct: 580 LTGLVQSALLRGSEPETPSEKIEGS--------------NGAATPSAPCGSGGRSSGATP 625
Query: 571 KQSPFLYATAFWPKSSAAAAAAAAAAAAGPLQLQL 605
P P SA++ A A LQ+QL
Sbjct: 626 VSGP--------PPPSASSTPAGQPTAVSRLQMQL 652
>gi|24432032 zinc finger protein 503 [Homo sapiens]
Length = 646
Score = 51.6 bits (122), Expect = 2e-06
Identities = 64/248 (25%), Positives = 91/248 (36%), Gaps = 21/248 (8%)
Query: 188 SPQDEQGGGVGTKDHGGGGGGGKDQQQQQQEAPLGPGPKFCKAGPLHHYPSPSPESSNP- 246
S + E GGG G GGGGGGG ++ P F P PS S + +P
Sbjct: 183 SDKKEPGGGGGGGGGGGGGGGGVSSEKSGFRVPSATCQPFT---PRTGSPSSSASACSPG 239
Query: 247 ---SAAAGGSSAKPSTDFHNLARELENSRGGSSCSPAQSLSSGSGSGGGGGHQEAELSPD 303
S+A G K ++ + + G S+ L+ G S GGG + + PD
Sbjct: 240 GMLSSAGGAPEGKDDKKDTDVGGGGKGTGGASAEGGPTGLAHGRISCGGGINVDVNQHPD 299
Query: 304 GIATGGGKGKRKFPEEAAEGGGGAGLVGGRGRFVERPLPASKEDLVCTPQQYRASGSYFG 363
G G G ++ GG +G G G LV Y+ + F
Sbjct: 300 GGPGGKALG--------SDCGGSSGSSSGSGPSAPTSSSVLGSGLVAPVSPYKPGQTVFP 351
Query: 364 LEENGRLFAPPSPETGEAKRSAFVEVKKAARAASLQEEGTADGAGVASEDQDAGGGGGSS 423
L G + P G A + A + G+ GA +A+ A G G S
Sbjct: 352 LPPAGMTY--PGSLAG-AYAGYPPQFLPHGVALDPTKPGSLVGAQLAAA---AAGSLGCS 405
Query: 424 TPAAASPV 431
PA +SP+
Sbjct: 406 KPAGSSPL 413
Score = 48.1 bits (113), Expect = 3e-05
Identities = 75/312 (24%), Positives = 107/312 (34%), Gaps = 45/312 (14%)
Query: 276 SCSPAQSLSSGSGSGGGGGHQEAELSPDGIATGGGKGKRKFPEEAAEGGGGAGLVGGRGR 335
S S +S G GGGGG A+ + +G G G G+ G
Sbjct: 6 SLSALRSSKHSGGGGGGGGGGGADPAWTSALSGNSSGP----------GPGSSPAGSTKP 55
Query: 336 FVERPLP------ASKEDLVCTPQQYRASGSYFGLEENGRLFAPP-SPETGEAKRSAFVE 388
FV P A++ + +G E L + P SP +AK+S
Sbjct: 56 FVHAVPPSDPLRQANRLPIKVLKMLTARTGHILHPEYLQPLPSTPVSPIELDAKKSPLAL 115
Query: 389 VKKAARAASLQEEGTADGAGVASEDQDAGGGGGSSTPAAASPVGAEKLLAPRPGGPLPSR 448
+ A + + + + + ++S + GG GG+ AA GPL +
Sbjct: 116 L--AQTCSQIGKPDPSPSSKLSSVASNGGGAGGAGGGAAGDK--------DTKSGPL--K 163
Query: 449 LEGGSPARGSAFTSVPQLGSAGSTSGGGGTGAGAAGGAGGGQGAASDERKSAFSQPARSF 508
L S+F + GS GGGG G G GG GGG + KS F P+ +
Sbjct: 164 LSDIGVEDKSSFKPYSKPGSDKKEPGGGGGGGGGGGGGGGGVSS----EKSGFRVPSATC 219
Query: 509 SQLSPLVLGQKLGALEPCHPADGVGPTRLYPAAADPL-------AVKLQGAADLNGGCGS 561
+P G + C P + P D K G A GG
Sbjct: 220 QPFTPRT-GSPSSSASACSPGGMLSSAGGAPEGKDDKKDTDVGGGGKGTGGASAEGGPTG 278
Query: 562 LPSG----GGGL 569
L G GGG+
Sbjct: 279 LAHGRISCGGGI 290
Score = 45.1 bits (105), Expect = 2e-04
Identities = 111/493 (22%), Positives = 152/493 (30%), Gaps = 110/493 (22%)
Query: 184 SADISPQDEQGGGVGTKDHGGGGGGGKDQQQQQQEAPLGPGPKFCKAGPLHHYPSPSPES 243
S+ +S GGG G GGG G KD K+GPL
Sbjct: 131 SSKLSSVASNGGGAGGA--GGGAAGDKDT----------------KSGPL---------K 163
Query: 244 SNPSAAAGGSSAKPSTDFHNLARELENSRGGSSCSPAQSLSSGSGSGGGGGHQEAELSPD 303
+ SS KP + G P G G GGGGG +E S
Sbjct: 164 LSDIGVEDKSSFKPYS-----------KPGSDKKEPGGGGGGGGGGGGGGGGVSSEKSGF 212
Query: 304 GIATGGGK---GKRKFPEEAAEGGGGAGLVGGRGRFVERPLPASKEDLVCTPQQYRASGS 360
+ + + + P +A G++ G P K+D T G+
Sbjct: 213 RVPSATCQPFTPRTGSPSSSASACSPGGMLSSAG-----GAPEGKDDKKDTDVGGGGKGT 267
Query: 361 YFGLEENGRLFAPPSPETGEAKRSAFVEVK-----------KAARAASLQEEGTADGAGV 409
E G P G + V KA + G++ G+G
Sbjct: 268 GGASAEGG----PTGLAHGRISCGGGINVDVNQHPDGGPGGKALGSDCGGSSGSSSGSGP 323
Query: 410 ASEDQDAGGGGGSSTPAAASPVGAEKLLAPRPGGPLPSRLEGGSPARGSAFTSVPQLGSA 469
++ + G G P + G P G P L G F +P +
Sbjct: 324 SAPTSSSVLGSGLVAPVSPYKPGQTVFPLPPAGMTYPGSLAGAYAGYPPQF--LPHGVAL 381
Query: 470 GSTSGGGGTGAGAAGGAGGGQGAASDERKSAFSQPARSFSQLSPLVLGQKLGALEPCHPA 529
T G GA A A G G S+PA S SPL
Sbjct: 382 DPTKPGSLVGAQLAAAAAGSLGC---------SKPAGS----SPLA-------------- 414
Query: 530 DGVGPTRLYPAA--ADP------LAVKLQGAADLNGGCGSLPSGGGGLPKQS-PFLYATA 580
G P + A+ DP A L GAA + C P+ K P +Y T
Sbjct: 415 -GASPPSVMTASLCRDPYCLSYHCASHLAGAAAASASCAHDPAAAAAALKSGYPLVYPTH 473
Query: 581 FWPKSSAAAAAAAAAAAAGPLQLQLPSALTLLPPSFTSLCLPAQNWC------AKCNASF 634
++ AAAAA A P P L P F P + C C+ F
Sbjct: 474 PLHGVHSSLTAAAAAGATPPSLAGHP----LYPYGFMLPNDPLPHICNWVSANGPCDKRF 529
Query: 635 RMTSDLVYHMRSH 647
+ +L+ H+R+H
Sbjct: 530 ATSEELLSHLRTH 542
>gi|13375636 PR domain containing 14 [Homo sapiens]
Length = 571
Score = 51.6 bits (122), Expect = 2e-06
Identities = 32/99 (32%), Positives = 46/99 (46%), Gaps = 11/99 (11%)
Query: 88 WLRLVQSARDKEEQNLEAYIKNGQLFYRSLRRIAKDEELLVWYGKELTELLLLCPSRSHN 147
W+ V AR +EQNL A G +FY S + I +++ELLVWYG + E L P
Sbjct: 324 WMSYVNCARFPKEQNLVAVQCQGHIFYESCKEIHQNQELLVWYG-DCYEKFLDIPVSLQV 382
Query: 148 KMNGSSP----------YTCLECSQRFQFEFPYVAHLRF 176
G P Y C C + F +++ HL++
Sbjct: 383 TEPGKQPSGPSEESAEGYRCERCGKVFTYKYYRDKHLKY 421
>gi|13994287 BTE-binding protein 4 [Homo sapiens]
Length = 252
Score = 51.2 bits (121), Expect = 3e-06
Identities = 62/233 (26%), Positives = 85/233 (36%), Gaps = 60/233 (25%)
Query: 473 SGGGGTGAGAAGGAGGGQGAASDERKSAFSQPARSFSQLSPLVLGQKLGALEPCHPADGV 532
S G G G G G A D R + + S +P G P A G
Sbjct: 20 SSGAVVHRGRPGPEGAGPAAGLDVRAAR----REAASPGTP-------GPPPPPPAASGP 68
Query: 533 GPTRLYPAAADPLAVKLQGAADLNGGCGSLPSGGGGLPKQSPFLYATAFWPKSSAAAAAA 592
GP AAA P + ADL GG G+ P G SP ++A SS A A
Sbjct: 69 GPG----AAAAPHLLAASILADLRGGPGAAPGGA------SPASSSSAASSPSSGRAPGA 118
Query: 593 AAAAAAGPLQLQLPSALTLLPPSFTSLCLPAQNWCAKCNASFRMTSDLVYHMRSH----- 647
A +AAA + P CAK ++ +S L H+R+H
Sbjct: 119 APSAAAKSHRCPFPD-------------------CAK---AYYKSSHLKSHLRTHTGERP 156
Query: 648 --------HKKEYAMEPLVKRRR----EEKLKCPICNESFRERHHLSRHMTSH 688
KK + L + R E++ CP+C++ F HL++H H
Sbjct: 157 FACDWQGCDKKFARSDELARHHRTHTGEKRFSCPLCSKRFTRSDHLAKHARRH 209
>gi|20162554 Kruppel-like factor 14 [Homo sapiens]
Length = 323
Score = 51.2 bits (121), Expect = 3e-06
Identities = 67/283 (23%), Positives = 86/283 (30%), Gaps = 43/283 (15%)
Query: 413 DQDAGGGGGSSTPAAASPVGAEKLLAPRPGGPLPSRLEGGSPARGSAFTSVPQLGSAGST 472
D + GG S AA P A L P P GP SVPQL +
Sbjct: 31 DPEGAGGAAGSEVGAAHPESA--LPGPGPSGP----------------ASVPQLPQVPAP 72
Query: 473 SGGGGTGAGAAGGAG------GGQGAASDERKSAFSQPARSFSQLSPLVLGQKLGALEPC 526
S G G A A G G S E + + FS P + L P
Sbjct: 73 SPGAGGAAPHLLAASVWADLRGSSGEGSWENSGEAPRASSGFSDPIPCSVQTPCSELAPA 132
Query: 527 HPADGV-GPTRLYPAAADPLAVKLQGAADLNGGCGSLPSGGGGLPKQSPFLYATAFWPKS 585
A V P A A P A GA +GG G G P + P +
Sbjct: 133 SGAAAVCAPESSSDAPAVPSAPAAPGAPAASGGFSGGALGAGPAPAADQAPRRRSVTPAA 192
Query: 586 SAAAAAAAAAAAAGPLQLQLPSALTLLPPSFTSLCLPAQNWCAKCNASFRMTSDLVYHMR 645
A L S C +W C+ F + +L H R
Sbjct: 193 KRHQCPFPGCTKAYYKSSHLKSHQRTHTGERPFSC----DWL-DCDKKFTRSDELARHYR 247
Query: 646 SHHKKEYAMEPLVKRRREEKLKCPICNESFRERHHLSRHMTSH 688
+H E++ CP+C + F HL++H H
Sbjct: 248 TH-------------TGEKRFSCPLCPKQFSRSDHLTKHARRH 277
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 50.8 bits (120), Expect = 4e-06
Identities = 100/404 (24%), Positives = 121/404 (29%), Gaps = 51/404 (12%)
Query: 195 GGVGTKDHGG-GGGGGKDQQQQQQEAPLGPGPKFCKAGPLHHYPSPSPESSNPSAAAG-- 251
G G K H G G G A PGP+ + G P P +G
Sbjct: 505 GKNGDKGHAGLAGARGAPGPDGNNGAQGPPGPQGVQGGKGEQGPPGPPGFQGLPGPSGPA 564
Query: 252 GSSAKPSTDFHNLARELENSRG--GSSCSPAQSLSSGSGSGGGGGHQEAELSPDG----- 304
G KP + L G G P +S ++G G PDG
Sbjct: 565 GEVGKPGERGLHGEFGLPGPAGPRGERGPPGESGAAGPTGPIGSRGPSGPPGPDGNKGEP 624
Query: 305 -----IATGGGKGKRKFPEEAAEGGGGAGLVGGRGRFVERPLPAS-----KEDLVCTPQQ 354
+ T G G P E G AG+ GG+G E L ++ P
Sbjct: 625 GVVGAVGTAGPSGPSGLPGER----GAAGIPGGKGEKGEPGLRGEIGNPGRDGARGAPGA 680
Query: 355 YRASGSYFGLEENGRLFA-----PPSPETGEAKRSAFVEVKKAARAASLQEEGTADGAGV 409
A G + G A P P +R EV A G A G
Sbjct: 681 VGAPGPAGATGDRGEAGAAGPAGPAGPRGSPGERG---EVGPAGPNGFAGPAGAAGQPGA 737
Query: 410 ASEDQDAGGGGGSSTPAAASPVGAEKLLAPR-PGGPLPSRLEGGSPARGSAFTSVPQLGS 468
E G G + PVGA P P GP SR +GG P G
Sbjct: 738 KGERGAKGPKGENGVVGPTGPVGAAGPAGPNGPPGPAGSRGDGGPP------------GM 785
Query: 469 AGSTSGGGGTGAGAAGGAGGGQGAASDERKSAFSQPARSFSQLSPLVLGQKLGALEPCHP 528
G G TG G G G K P P+ ++GA+ P
Sbjct: 786 TGFPGAAGRTGPPGPSGISGPPGPPGPAGKEGLRGPR---GDQGPVGRTGEVGAVGPPGF 842
Query: 529 ADGVGPTRLYPAAADPLAVKLQGAADLNGGCGSLPSGGG--GLP 570
A GP+ A P QG G G LP G GLP
Sbjct: 843 AGEKGPSGEAGTAGPPGTPGPQGLLGAPGILG-LPGSRGERGLP 885
Score = 36.2 bits (82), Expect = 0.10
Identities = 69/288 (23%), Positives = 83/288 (28%), Gaps = 39/288 (13%)
Query: 205 GGGGGKDQQQQQQEAPLGPGPKFCKAGPLHHYPSPSPESSNPSAAAGGSSAKPSTDFHNL 264
G GG Q + LGPGP P G + A F
Sbjct: 72 GLGGNFAAQYDGKGVGLGPGPMGLMG---------------PRGPPGAAGAPGPQGFQGP 116
Query: 265 ARELENSRGGSSCSPAQSLSSGSGSGGGGGHQEAELSPDGIATGGGKGKRKFPEEAAEGG 324
A E G + + A+ + G G GH P G +G R FP
Sbjct: 117 AGE-PGEPGQTGPAGARGPAGPPGKAGEDGHPGKPGRPGERGVVGPQGARGFP------- 168
Query: 325 GGAGLVGGRGRFVERPLPASKEDLVCTPQQYRASGSYFGLEENGRLFAPPSPETGEAKRS 384
G GL G +G L K P G ENG P
Sbjct: 169 GTPGLPGFKGIRGHNGLDGLKGQ----PGAPGVKGEPGAPGENGT----PGQTGARGLPG 220
Query: 385 AFVEVKKAARAASLQEEGTADGAGVASEDQDAGGGGGSSTPAAASPVGAEKLLAPRPGGP 444
V A + +G+ G A AG G P +GA P GP
Sbjct: 221 ERGRVGAPGPAGARGSDGSVGPVGPAGPIGSAGPPGFPGAPGPKGEIGAVGNAGP--AGP 278
Query: 445 LPSRLEGGSPARGSAFTSVPQLGSAGSTSGGGGTGAGAAGGAGGGQGA 492
R E G P +G G+ G TGA A G G GA
Sbjct: 279 AGPRGEVGLPGLSG------PVGPPGNPGANGLTGAKGAAGLPGVAGA 320
Score = 36.2 bits (82), Expect = 0.10
Identities = 88/368 (23%), Positives = 111/368 (30%), Gaps = 46/368 (12%)
Query: 242 ESSNPSAAAGGSSAKPSTDFHNLARELENSRGGSSCSPAQSLSSGS-GSGG--GGGHQEA 298
ES N P + N GS+ P GS GS G G +
Sbjct: 356 ESGNKGEPGSAGPQGPPGPSGEEGKRGPNGEAGSAGPPGPPGLRGSPGSRGLPGADGRAG 415
Query: 299 ELSPDGIATGGGKGKRKFPEEAAEGGGGAGLVGGRG--RFVERPLPASKEDLVCTP---Q 353
+ P G G + P A G GL+G RG PA KE V P
Sbjct: 416 VMGPPGSRGASGPAGVRGPNGDAGRPGEPGLMGPRGLPGSPGNIGPAGKEGPVGLPGIDG 475
Query: 354 QYRASGSYFGLEENGRL-FAPPSPETGEAKRSAFVEVKKAARAASLQEEGTADGAGVASE 412
+ G E G + F P TG+ ++ + A A + G G
Sbjct: 476 RPGPIGPAGARGEPGNIGFPGPKGPTGDPGKNG--DKGHAGLAGARGAPGPDGNNGAQGP 533
Query: 413 DQDAGGGGGSSTPAAASPVGAEKLLAPRPGGPLPSRLEGGSPARGSAFTSVPQLGSAGST 472
G GG P G + L P P GP E G P G AG
Sbjct: 534 PGPQGVQGGKGEQGPPGPPGFQGL--PGPSGPAG---EVGKPGERGLHGEFGLPGPAGPR 588
Query: 473 SGGGGTGAGAAGGAGGGQGAASDERKSAFSQPARSFSQLSPLVLGQKLGALEPCHPADGV 532
G G A G G G+ + P ++ P V+G +G P P+
Sbjct: 589 GERGPPGESGAAGPTGPIGS-----RGPSGPPGPDGNKGEPGVVG-AVGTAGPSGPSGLP 642
Query: 533 GPTRLYPAAADPLAVKLQGAADLNGGCGSLPSGGGGLPKQSPFLYATAFWPKSSAAAAAA 592
G +GAA + GG G K P L P A A
Sbjct: 643 GE---------------RGAAGIPGGKGE---------KGEPGLRGEIGNPGRDGARGAP 678
Query: 593 AAAAAAGP 600
A A GP
Sbjct: 679 GAVGAPGP 686
>gi|73476377 LBXCOR1 homolog [Homo sapiens]
Length = 921
Score = 50.8 bits (120), Expect = 4e-06
Identities = 88/351 (25%), Positives = 121/351 (34%), Gaps = 67/351 (19%)
Query: 189 PQDEQGGGVGTKDHGGGGGGGKDQQQQQQEAPLGPGPK-----FCKAGPL---HHYPSPS 240
P ++G G+ T G G GG + P+ P P K P H Y P+
Sbjct: 298 PHPQRGLGLATGASGPAGPGGPGGGAGVRSYPVIPVPSKGFGLLQKLPPPLFPHPYGFPT 357
Query: 241 -----PESSNPSAAAGGSSAKPSTDFHNLARELENSRGGSSCSPAQSLSSGSGSGGGGGH 295
P+ +P AG P T S GG G+G+GGG G
Sbjct: 358 AFGLCPKKDDPVLGAGEPKGGPGT----------GSGGG-----------GAGTGGGAGG 396
Query: 296 QEAELSPDGIATGGGKGKRKFPEEAAEGGGGAGLVGGRGRFVERPLPASKEDLVCTPQQY 355
A P G G G G + + + A V A+ P +
Sbjct: 397 PGASHLPPGAGAGPGGGAMFWGHQPSGAAKDAAAVAAAA--------AAATVYPTFPMFW 448
Query: 356 RASGSYFGLEENGRLFAPPSPET-GEAKRSAFVEVKKAARAASLQEEGTADGAGVASEDQ 414
A+GS L P P +AK A AA AA+ G + A +
Sbjct: 449 PAAGS---------LPVPSYPAAQSQAKAVAAAVAAAAAAAAAAAGSGAPEPLDGAEPAK 499
Query: 415 DAGGGGGSSTPAAAS--PV---GAEKLLAPRPGGPLPSRLEGGSPARGSAFTS-----VP 464
++G G P+A S P+ G ++ L P P PLP PAR ++ S V
Sbjct: 500 ESGLGAEERCPSALSRGPLDEDGTDEALPP-PLAPLPP--PPPPPARKGSYVSAFRPVVK 556
Query: 465 QLGSAGSTSGGG--GTGAGAAGGAGGGQGAASDERKSAFSQPARSFSQLSP 513
S G GAG A G G G G+ S+ + S++ SP
Sbjct: 557 DTESIAKLYGSAREAYGAGPARGPGPGAGSGGYVSPDFLSEGSSSYNSASP 607
Score = 43.5 bits (101), Expect = 7e-04
Identities = 68/216 (31%), Positives = 73/216 (33%), Gaps = 24/216 (11%)
Query: 402 GTADGA-GVASEDQDAGGGGGSSTPAAASPVGAEKLLAPRPGGPLPSRLEGGSPARGSAF 460
G A GA G A GG G S P P LL P PL G A G
Sbjct: 305 GLATGASGPAGPGGPGGGAGVRSYPVIPVPSKGFGLLQKLPP-PLFPHPYGFPTAFGLCP 363
Query: 461 TSVPQLGSAGSTSGGGGTGAGAAGGAGGGQGAASDERKSAFSQPARSFSQLSPLV-LGQK 519
+ AG GG GTG+G GGAG G GA S L P G
Sbjct: 364 KKDDPVLGAGEPKGGPGTGSGG-GGAGTGGGAGGP-----------GASHLPPGAGAGPG 411
Query: 520 LGALEPCHPADGVGPTRLYPAAADPLAVKLQGAADLNGGCGSLPSGGGGLPKQSPFLYAT 579
GA+ H G AAA A GSLP P A
Sbjct: 412 GGAMFWGHQPSGAAKDAAAVAAAAAAATVYPTFPMFWPAAGSLPV---------PSYPAA 462
Query: 580 AFWPKSSAAAAAAAAAAAAGPLQLQLPSALTLLPPS 615
K+ AAA AAAAAAAA P L P+
Sbjct: 463 QSQAKAVAAAVAAAAAAAAAAAGSGAPEPLDGAEPA 498
Score = 42.0 bits (97), Expect = 0.002
Identities = 74/255 (29%), Positives = 90/255 (35%), Gaps = 65/255 (25%)
Query: 394 RAASLQEEGTADGAGVASEDQDAGGGGGSSTPAAASP---------VGAEKLLAPRPGGP 444
R L ++ D A ED A GG+ A +P G ++ P PG P
Sbjct: 238 RHLKLSDKSATDELSHAWEDVKAMFNGGTRCGAEMAPGPPPHKSLRCGEDEAAGP-PGPP 296
Query: 445 LPSRLEGGSPARGSAFTSVPQLGSAGSTSGGGGTGAGAAGGAGGGQGAASDERKSAFSQP 504
P P RG LG A SG G G G GGG G S P
Sbjct: 297 PPH------PQRG--------LGLATGASGPAGPG-----GPGGGAGVRS---YPVIPVP 334
Query: 505 ARSFSQLSPLVLGQKLGALEPCHPADGVGPTRLYPAAADPLAVKLQGAADLNGGCGSLPS 564
++ F L QKL HP L P DP+ GA + GG G+
Sbjct: 335 SKGFGLL------QKLPPPLFPHPYGFPTAFGLCPKKDDPVL----GAGEPKGGPGTGSG 384
Query: 565 GGG----------GLPKQSPFLYA-----TAFW-------PKSSAAAAAAAAAAAAGP-L 601
GGG G P A FW K +AA AAAAAAA P
Sbjct: 385 GGGAGTGGGAGGPGASHLPPGAGAGPGGGAMFWGHQPSGAAKDAAAVAAAAAAATVYPTF 444
Query: 602 QLQLPSALTLLPPSF 616
+ P+A +L PS+
Sbjct: 445 PMFWPAAGSLPVPSY 459
Score = 34.7 bits (78), Expect = 0.30
Identities = 92/410 (22%), Positives = 138/410 (33%), Gaps = 55/410 (13%)
Query: 166 FEFPYVAHLRFR-CPKRLHSADISPQDEQGGGVGTKDHG---GGGGGGKDQQQQQQEAPL 221
F PY F CPK+ + + + G G G+ G GGG GG A
Sbjct: 349 FPHPYGFPTAFGLCPKKDDPVLGAGEPKGGPGTGSGGGGAGTGGGAGGPGASHLPPGAGA 408
Query: 222 GPGPKFCKAGPLHHYPS-PSPESSNPSAAAGGSSAKPSTD-FHNLAREL--------ENS 271
GPG G H PS + +++ +AAA ++ P+ F A L ++
Sbjct: 409 GPGGGAMFWG---HQPSGAAKDAAAVAAAAAAATVYPTFPMFWPAAGSLPVPSYPAAQSQ 465
Query: 272 RGGSSCSPAQSLSSGSGSGGGGGHQEAELSPDGIATGGGKGKRKFPEEAAEGGGGAGLVG 331
+ + A + ++ + + G G + + + +G G EE G +
Sbjct: 466 AKAVAAAVAAAAAAAAAAAGSGAPEPLDGAEPAKESGLG------AEERCPSALSRGPLD 519
Query: 332 GRGRFVERPLPASKEDLVCTPQQYRASGSYFGLEENGRLFAPPSPETGEAKRSAFVEVKK 391
G + LP L P GSY F P +T E+ + ++
Sbjct: 520 EDG--TDEALPPPLAPLPPPPPPPARKGSYVS------AFRPVVKDT-ESIAKLYGSARE 570
Query: 392 AARAASLQEEGTADGAGVASEDQDAGGGGGSSTPAAASPVGAEKLLAPRPGGPLPS-RLE 450
A A + G G+G D G SS +A+ V A P + S R
Sbjct: 571 AYGAGPARGPGPGAGSG-GYVSPDFLSEGSSSYNSASPDVDT----ADEPEVDVESNRFP 625
Query: 451 GGSPARGSAFTSVPQLGSAGS----TSGGGGTGAGAAGGAGGGQGAASDERKSAFSQPA- 505
A+ S P G T T +GA G A G + R+ PA
Sbjct: 626 DDEDAQEETEPSAPSAGGGPDGEQPTGPPSATSSGADGPANSPDGGSPRPRRRLGPPPAG 685
Query: 506 -RSFSQL-----------SPLVLGQKLGALEPCHPADGVGPTRLYPAAAD 543
+F L SP G EPC P G P +++ D
Sbjct: 686 RPAFGDLAAEDLVRRPERSPPSGGGGYELREPCGPLGGPAPAKVFAPERD 735
>gi|41349474 PR domain containing 4 [Homo sapiens]
Length = 801
Score = 50.4 bits (119), Expect = 5e-06
Identities = 40/178 (22%), Positives = 77/178 (43%), Gaps = 17/178 (9%)
Query: 18 VQQCLTDIFTSVYTTCDIPENAIFGPCVLSHTSLYDSIAFIALKSTDKRTVPYIFRV--- 74
++Q + V+T IP FGP + + + + TDK V +I+++
Sbjct: 416 LRQSIVGAEVGVWTGETIPVRTCFGPLIGQQSHSMEVAEW-----TDK-AVNHIWKIYHN 469
Query: 75 ---DTSAANGSSEGLMWLRLVQSARDKEEQNLEAYIKNGQLFYRSLRRIAKDEELLVWYG 131
+ W+ V+ AR++EEQNL AY +G++F+ + + I + ELL +Y
Sbjct: 470 GVLEFCIITTDENECNWMMFVRKARNREEQNLVAYPHDGKIFFCTSQDIPPENELLFYYS 529
Query: 132 KELTELLLLCPSRSHNKMNGSSPYTCLECSQRFQFEFPYVAHLRFRCPKRLHSADISP 189
++ + + + + N EC+ +F+ +H+ P + HS P
Sbjct: 530 RDYAQQIGVPEHPDVHLCNCGK-----ECNSYTEFKAHLTSHIHNHLPTQGHSGSHGP 582
Score = 40.0 bits (92), Expect = 0.007
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 15/77 (19%)
Query: 627 CAKCNASFRMTSDLVYHMRSHH-----KKEYAMEPLVKRR----------REEKLKCPIC 671
C C+ SF + L HM H K +Y + ++R+ +E ++KCP C
Sbjct: 648 CTLCDKSFTQKAHLESHMVIHTGEKNLKCDYCDKLFMRRQDLKQHVLIHTQERQIKCPKC 707
Query: 672 NESFRERHHLSRHMTSH 688
++ F +HL +H+ SH
Sbjct: 708 DKLFLRTNHLKKHLNSH 724
Score = 34.3 bits (77), Expect = 0.40
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 15/60 (25%)
Query: 627 CAKCNASFRMTSDLVYHMRSHH-KKEYAMEPLVKRRREEKLKCPICNESFRERHHLSRHM 685
C KC+ F T+ L H+ SH K++Y C C +++ ++HL+RH+
Sbjct: 704 CPKCDKLFLRTNHLKKHLNSHEGKRDYV--------------CEKCTKAYLTKYHLTRHL 749
Score = 33.9 bits (76), Expect = 0.52
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 13/62 (20%)
Query: 627 CAKCNASFRMTSDLVYHMRSHHKKEYAMEPLVKRRREEKLKCPICNESFRERHHLSRHMT 686
C C+ +F S+L H++ H ++ +C +C++SF ++ HL HM
Sbjct: 620 CDFCSKAFSDPSNLRTHLKIH-------------TGQKNYRCTLCDKSFTQKAHLESHMV 666
Query: 687 SH 688
H
Sbjct: 667 IH 668
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.132 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,924,656
Number of Sequences: 37866
Number of extensions: 2081568
Number of successful extensions: 40462
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 1558
Number of HSP's that attempted gapping in prelim test: 14501
Number of HSP's gapped (non-prelim): 19544
length of query: 689
length of database: 18,247,518
effective HSP length: 109
effective length of query: 580
effective length of database: 14,120,124
effective search space: 8189671920
effective search space used: 8189671920
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.