Guide to the Human Genome
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Name: PRDM14 Sequence: fasta or formatted (571aa) NCBI GI: 13375636
Description:

PR domain containing 14

Referenced in:

Kruppel-related Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.9         28           3
 C cysteine            4.4         25           2
 D aspartate           4.9         28           2
 E glutamate           6.5         37           2
 F phenylalanine       5.3         30           1
 G glycine             7.0         40           2
 H histidine           5.1         29           2
 I isoleucine          3.0         17           2
 K lysine              6.0         34           1
 L leucine             7.5         43           2
 M methionine          1.4          8           1
 N asparagine          1.9         11           1
 P proline             9.6         55           4
 Q glutamine           4.4         25           1
 R arginine            4.6         26           2
 S serine             10.3         59           3
 T threonine           3.2         18           1
 V valine              4.9         28           2
 W tryptophan          0.9          5           1
 Y tyrosine            4.4         25           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PR domain containing 14 
PRDM6                 0.126   PR domain containing 6 
PRDM4                 0.110   PR domain containing 4 
PRDM12                0.106   PR domain containing 12 
ZNF426                0.102   zinc finger protein 426 
ZNF154                0.099   zinc finger protein 154 
ZNF91                 0.098   zinc finger protein 91 
ZNF792                0.098   zinc finger protein 792 
ZFP112                0.098   zinc finger protein 228 isoform 1 
ZFP112                0.098   zinc finger protein 228 isoform 2 
ZNF778                0.098   zinc finger protein 778 
ZNF665                0.098   zinc finger protein 665 
ZNF235                0.098   zinc finger protein 93 homolog 
ZNF92                 0.097   zinc finger protein 92 isoform 1 
ZNF92                 0.097   zinc finger protein 92 isoform 2 
ZNF45                 0.097   zinc finger protein 45 
ZNF239                0.097   zinc finger protein 239 
ZNF239                0.097   zinc finger protein 239 
ZNF239                0.097   zinc finger protein 239 
ZNF239                0.097   zinc finger protein 239 
ZNF211                0.096   zinc finger protein 211 isoform 2 
ZNF211                0.096   zinc finger protein 211 isoform 1 
LOC388559             0.096   PREDICTED: similar to hCG1778601 isoform 1 
LOC388559             0.096   PREDICTED: similar to hCG1778601 isoform 1 
LOC388559             0.096   PREDICTED: hypothetical protein LOC388559 
ZNF79                 0.096   zinc finger protein 79 
ZNF454                0.096   zinc finger protein 454 
ZKSCAN1               0.095   zinc finger protein 36 
ZNF616                0.095   zinc finger protein 616 
ZNF214                0.095   zinc finger protein 214 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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