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Search of human proteins with 110227624
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|110227624 pre T-cell antigen receptor alpha [Homo sapiens]
(281 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|110227624 pre T-cell antigen receptor alpha [Homo sapiens] 592 e-169
gi|11034811 catenin (cadherin-associated protein), delta 2 (neur... 38 0.011
gi|169171347 PREDICTED: hypothetical protein [Homo sapiens] 35 0.096
gi|47716512 mex-3 homolog B [Homo sapiens] 35 0.096
gi|209529739 hypothetical protein LOC100132247 [Homo sapiens] 33 0.21
gi|239745501 PREDICTED: similar to acyl-CoA synthetase medium-ch... 33 0.21
gi|217416332 trinucleotide repeat containing 6C isoform 1 [Homo ... 33 0.21
gi|153792694 baculoviral IAP repeat-containing 6 [Homo sapiens] 33 0.21
gi|157074225 nuclear pore complex interacting protein-like 3 [Ho... 33 0.21
gi|55750053 atrophin-1 [Homo sapiens] 33 0.21
gi|55750041 atrophin-1 [Homo sapiens] 33 0.21
gi|27735129 hypothetical protein LOC148345 [Homo sapiens] 33 0.21
gi|113421471 PREDICTED: hypothetical protein [Homo sapiens] 33 0.28
gi|239747300 PREDICTED: hypothetical protein XP_002346414 [Homo ... 32 0.48
gi|239741124 PREDICTED: hypothetical protein XP_002342114 [Homo ... 32 0.48
gi|121674801 hepatocyte cell adhesion molecule [Homo sapiens] 32 0.48
gi|7524361 paired box 8 isoform PAX8B [Homo sapiens] 32 0.48
gi|54860079 nadrin isoform 1 [Homo sapiens] 32 0.48
gi|54860105 nadrin isoform 2 [Homo sapiens] 32 0.48
gi|148833506 obscurin, cytoskeletal calmodulin and titin-interac... 32 0.81
gi|169169677 PREDICTED: hypothetical protein [Homo sapiens] 32 0.81
gi|169190076 PREDICTED: hypothetical protein [Homo sapiens] 32 0.81
gi|169166217 PREDICTED: hypothetical protein [Homo sapiens] 32 0.81
gi|4885407 hyperpolarization activated cyclic nucleotide-gated p... 31 1.1
gi|239754368 PREDICTED: hypothetical protein [Homo sapiens] 31 1.1
gi|239748915 PREDICTED: hypothetical protein XP_002346855 [Homo ... 31 1.1
gi|239742939 PREDICTED: hypothetical protein XP_002342693 [Homo ... 31 1.1
gi|98986461 neurogenic differentiation 2 [Homo sapiens] 31 1.1
gi|30425563 reticulon 4 receptor-like 2 [Homo sapiens] 31 1.1
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 31 1.1
>gi|110227624 pre T-cell antigen receptor alpha [Homo sapiens]
Length = 281
Score = 592 bits (1525), Expect = e-169
Identities = 281/281 (100%), Positives = 281/281 (100%)
Query: 1 MAGTWLLLLLALGCPALPTGVGGTPFPSLAPPIMLLVDGKQQMVVVCLVLDVAPPGLDSP 60
MAGTWLLLLLALGCPALPTGVGGTPFPSLAPPIMLLVDGKQQMVVVCLVLDVAPPGLDSP
Sbjct: 1 MAGTWLLLLLALGCPALPTGVGGTPFPSLAPPIMLLVDGKQQMVVVCLVLDVAPPGLDSP 60
Query: 61 IWFSAGNGSALDAFTYGPSPATDGTWTNLAHLSLPSEELASWEPLVCHTGPGAEGHSRST 120
IWFSAGNGSALDAFTYGPSPATDGTWTNLAHLSLPSEELASWEPLVCHTGPGAEGHSRST
Sbjct: 61 IWFSAGNGSALDAFTYGPSPATDGTWTNLAHLSLPSEELASWEPLVCHTGPGAEGHSRST 120
Query: 121 QPMHLSGEASTARTCPQEPLRGTPGGALWLGVLRLLLFKLLLFDLLLTCSCLCDPAGPLP 180
QPMHLSGEASTARTCPQEPLRGTPGGALWLGVLRLLLFKLLLFDLLLTCSCLCDPAGPLP
Sbjct: 121 QPMHLSGEASTARTCPQEPLRGTPGGALWLGVLRLLLFKLLLFDLLLTCSCLCDPAGPLP 180
Query: 181 SPATTTRLRALGSHRLHPATETGGREATSSPRPQPRDRRWGDTPPGRKPGSPVWGEGSYL 240
SPATTTRLRALGSHRLHPATETGGREATSSPRPQPRDRRWGDTPPGRKPGSPVWGEGSYL
Sbjct: 181 SPATTTRLRALGSHRLHPATETGGREATSSPRPQPRDRRWGDTPPGRKPGSPVWGEGSYL 240
Query: 241 SSYPTCPAQAWCSRSALRAPSSSLGAFFAGDLPPPLQAGAA 281
SSYPTCPAQAWCSRSALRAPSSSLGAFFAGDLPPPLQAGAA
Sbjct: 241 SSYPTCPAQAWCSRSALRAPSSSLGAFFAGDLPPPLQAGAA 281
>gi|11034811 catenin (cadherin-associated protein), delta 2 (neural
plakophilin-related arm-repeat protein) [Homo sapiens]
Length = 1225
Score = 37.7 bits (86), Expect = 0.011
Identities = 34/108 (31%), Positives = 40/108 (37%), Gaps = 11/108 (10%)
Query: 178 PLPSPATTTRLRALGSHRLHPATETGGREATSSPRPQPRDRRWGDTPPGRKPGSPVWGEG 237
P PA T+ RA G T G A P P P PP R+P +P G
Sbjct: 185 PSQLPARGTQARATGQSFSQGTTSRAGHLAGPEPAPPP-------PPPPREPFAPSLGSA 237
Query: 238 SYLSSYPTCPAQA--WCSRSALRAPSSSLGAFFA--GDLPPPLQAGAA 281
+L P A A + S S L AP A G P LQ G +
Sbjct: 238 FHLPDAPPAAAAAALYYSSSTLPAPPRGGSPLAAPQGGSPTKLQRGGS 285
>gi|169171347 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1128
Score = 34.7 bits (78), Expect = 0.096
Identities = 25/58 (43%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
Query: 179 LPSPATTTRLRALGSHRLHPATETGGREATSSPRPQPRDRRWGDTPPGRKPGSPVWGE 236
LPSP T L A G R P S P+PQPR RR P PGS WGE
Sbjct: 244 LPSPGHTRPLPARG--RREPEAGESEARPESPPQPQPR-RRLARRGPSASPGS--WGE 296
>gi|47716512 mex-3 homolog B [Homo sapiens]
Length = 569
Score = 34.7 bits (78), Expect = 0.096
Identities = 31/102 (30%), Positives = 42/102 (41%), Gaps = 3/102 (2%)
Query: 180 PSPATTTRLRALGSHRLHPATETGGREAT-SSPRPQPRDRRWGDTPPGRKPGSP-VWGEG 237
PSPA + ++ + T T G EA+ SP P + D P PG+P +W +
Sbjct: 321 PSPALSFAHNGNNNNNGNGYTYTAGGEASVPSPDGCPELQPTFDPAPAPPPGAPLIWAQF 380
Query: 238 SYL-SSYPTCPAQAWCSRSALRAPSSSLGAFFAGDLPPPLQA 278
P P + CS SA + SSS F G P A
Sbjct: 381 ERSPGGGPAAPVSSSCSSSASSSASSSSVVFPGGGASAPSNA 422
>gi|209529739 hypothetical protein LOC100132247 [Homo sapiens]
Length = 1133
Score = 33.5 bits (75), Expect = 0.21
Identities = 21/57 (36%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
Query: 177 GPLPSPAT----TTRLRALGSHRLHPATETGGREATSSPRPQPRDRRWGDTPPGRKP 229
GPLP A T L + P R A P P+P+ RR GD P RKP
Sbjct: 998 GPLPPSADDNLKTPPLATQEAEAEKPRKPKRQRAAEMEPPPEPKRRRVGDVEPSRKP 1054
>gi|239745501 PREDICTED: similar to acyl-CoA synthetase medium-chain
family member 2 [Homo sapiens]
Length = 1122
Score = 33.5 bits (75), Expect = 0.21
Identities = 21/57 (36%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
Query: 177 GPLPSPAT----TTRLRALGSHRLHPATETGGREATSSPRPQPRDRRWGDTPPGRKP 229
GPLP A T L + P R A P P+P+ RR GD P RKP
Sbjct: 1016 GPLPPSADDNLKTPPLATQEAEAEKPRKPKRQRAAEMEPPPEPKRRRVGDVEPSRKP 1072
>gi|217416332 trinucleotide repeat containing 6C isoform 1 [Homo
sapiens]
Length = 1726
Score = 33.5 bits (75), Expect = 0.21
Identities = 31/101 (30%), Positives = 39/101 (38%), Gaps = 11/101 (10%)
Query: 184 TTTRLRALGSHRLH-PATETGGREATSSPRPQPRDRRWGDTPPGRKPGSPVWGEGSYLSS 242
TTT + +HR+ P G + SP P WG+ P WGE S S+
Sbjct: 763 TTTTTTSNTTHRVETPPPHQAGTQLNRSPLLGPVSSGWGEMPNVHSKTENSWGEPSSPST 822
Query: 243 YPTCPAQAWCSRSALRAPSSSLGAFFAGDLP--PPLQAGAA 281
AW + PSS G GD P PP+ G A
Sbjct: 823 LVDNGTAAWG-----KPPSSGSG---WGDHPAEPPVAFGRA 855
Score = 30.4 bits (67), Expect = 1.8
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 10/69 (14%)
Query: 175 PAGP------LPSPATTTRLRALGSHRLHPATETGGREATSSPRPQPRDRRWGDTPPGRK 228
P+GP + S A +T A H A + T P+P+ + WGD G++
Sbjct: 531 PSGPGVWGDSISSTAVSTAAAAKSGHAWSGAANQEDKSPTWGEPPKPKSQHWGD---GQR 587
Query: 229 PGSPVWGEG 237
+P W G
Sbjct: 588 -SNPAWSAG 595
>gi|153792694 baculoviral IAP repeat-containing 6 [Homo sapiens]
Length = 4857
Score = 33.5 bits (75), Expect = 0.21
Identities = 26/85 (30%), Positives = 34/85 (40%), Gaps = 19/85 (22%)
Query: 176 AGPLPSPATTTRLRALGS--------HRLHPATETGGREATSSPRPQPRDRRWGDTPPGR 227
+GP + +T + R L S H P G +SSP QP + TPP R
Sbjct: 3135 SGPNKAVDSTLKTRILASEPDNAEGIHNFAPL----GTITSSSPTAQPAEVLLQATPPHR 3190
Query: 228 KPGSPVWGEGSYLSSYPTCPAQAWC 252
+ S W SY P +AWC
Sbjct: 3191 RARSAAW-------SYIFLPEEAWC 3208
>gi|157074225 nuclear pore complex interacting protein-like 3 [Homo
sapiens]
Length = 678
Score = 33.5 bits (75), Expect = 0.21
Identities = 21/57 (36%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
Query: 177 GPLPSPAT----TTRLRALGSHRLHPATETGGREATSSPRPQPRDRRWGDTPPGRKP 229
GPLP A T L + P R A P P+P+ RR GD P RKP
Sbjct: 543 GPLPPSADDNLKTPPLATQEAEAEKPRKPKRQRAAEMEPPPEPKRRRVGDVEPSRKP 599
>gi|55750053 atrophin-1 [Homo sapiens]
Length = 1190
Score = 33.5 bits (75), Expect = 0.21
Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 7/60 (11%)
Query: 180 PSPATTTRLRALGSHRLHPATETGGREATSSPRPQPRDRRWGD-------TPPGRKPGSP 232
P P TT L + A+ G + S P P P +R TPPG KPGSP
Sbjct: 603 PVPTVTTSSATLSTVIATVASSPAGYKTASPPGPPPYGKRAPSPGAYKTATPPGYKPGSP 662
Score = 28.9 bits (63), Expect = 5.3
Identities = 29/101 (28%), Positives = 35/101 (34%), Gaps = 15/101 (14%)
Query: 178 PLPSPATTTRLRALGSHRLHPATETGGREATSSPRPQPRDRRWGDTPPGRKPGSP---VW 234
P P P +T + S HP+ G A P P R + PPG P P
Sbjct: 167 PSPQPPDSTPRQPEASFEPHPSVTPTGYHAPMEP---PTSRMF-QAPPGAPPPHPQLYPG 222
Query: 235 GEGSYLSSYPTCPAQAWCSRSALRAPSSSLGAFFAGDLPPP 275
G G LS P P +SS+G G PP
Sbjct: 223 GTGGVLSGPPMGPKGG--------GAASSVGGPNGGKQHPP 255
>gi|55750041 atrophin-1 [Homo sapiens]
Length = 1190
Score = 33.5 bits (75), Expect = 0.21
Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 7/60 (11%)
Query: 180 PSPATTTRLRALGSHRLHPATETGGREATSSPRPQPRDRRWGD-------TPPGRKPGSP 232
P P TT L + A+ G + S P P P +R TPPG KPGSP
Sbjct: 603 PVPTVTTSSATLSTVIATVASSPAGYKTASPPGPPPYGKRAPSPGAYKTATPPGYKPGSP 662
Score = 28.9 bits (63), Expect = 5.3
Identities = 29/101 (28%), Positives = 35/101 (34%), Gaps = 15/101 (14%)
Query: 178 PLPSPATTTRLRALGSHRLHPATETGGREATSSPRPQPRDRRWGDTPPGRKPGSP---VW 234
P P P +T + S HP+ G A P P R + PPG P P
Sbjct: 167 PSPQPPDSTPRQPEASFEPHPSVTPTGYHAPMEP---PTSRMF-QAPPGAPPPHPQLYPG 222
Query: 235 GEGSYLSSYPTCPAQAWCSRSALRAPSSSLGAFFAGDLPPP 275
G G LS P P +SS+G G PP
Sbjct: 223 GTGGVLSGPPMGPKGG--------GAASSVGGPNGGKQHPP 255
>gi|27735129 hypothetical protein LOC148345 [Homo sapiens]
Length = 656
Score = 33.5 bits (75), Expect = 0.21
Identities = 26/79 (32%), Positives = 31/79 (39%), Gaps = 17/79 (21%)
Query: 189 RALGSHRLHPATETGGREATSSPRPQPRDRRWGDTPPGRKP---GSPVWGEGSYLSSYPT 245
+ +GS PA+ R S P P P +TPP P S VW G
Sbjct: 197 QCVGSGTEPPASTAALRTTPSPPSPGP------ETPPAGVPPAASSQVWAAGP------- 243
Query: 246 CPAQAWCSRSALRAPSSSL 264
AQ W SR L PS +L
Sbjct: 244 -AAQEWLSRDLLHRPSDAL 261
>gi|113421471 PREDICTED: hypothetical protein [Homo sapiens]
Length = 199
Score = 33.1 bits (74), Expect = 0.28
Identities = 47/156 (30%), Positives = 59/156 (37%), Gaps = 43/156 (27%)
Query: 121 QPMHLSGEAST--ARTCPQE----PLRGTPG--GALWLGVLRLLLFKLLLFDLLLTCSCL 172
QP H + A+ A CP PL G PG G LW LLL CL
Sbjct: 47 QPPHPNAVAAALHASLCPANWGTCPL-GKPGYPGCLWFQ------------PLLLFPGCL 93
Query: 173 CDPAGPLPSPATTTRLRA-----LGSHRLHPATETGGREATSSPRPQPRDRRWGDTPPGR 227
C P GP P T+ + LG R+ P + T RP PR R
Sbjct: 94 CSPDGPFPRAVFTSAGKGPLQTDLGRGRVPPRD-----QQTPKSRPCPR----APVASNR 144
Query: 228 KPGSPVWGEGSYLSSYPTCPAQAWCSRSALRAPSSS 263
+ G GS +S+ + +AW +SA AP S
Sbjct: 145 QSG------GSAVSAPLSGARRAW--KSAFAAPPRS 172
>gi|239747300 PREDICTED: hypothetical protein XP_002346414 [Homo
sapiens]
Length = 470
Score = 32.3 bits (72), Expect = 0.48
Identities = 45/170 (26%), Positives = 58/170 (34%), Gaps = 10/170 (5%)
Query: 99 LASWEPLVCHTGPGAEGHSRSTQPMHLSGEASTARTCPQEPLRGTPGGALWLGVLRLLLF 158
LA+ L PG S T+ A R P P G LW L
Sbjct: 137 LAAAHGLPASEAPGLRPDSARTRLRLRLASARLPRGLPPAPAAG-----LWRAGCTRLRP 191
Query: 159 KLLLFDLLLTCSCLCDPAGPLPSPATTTRLRALGSHRLHPATETGGR-EATSSPR-PQPR 216
LL +L+ P L + A + G P GGR E SPR P
Sbjct: 192 LLLQPPPMLSPGLAQSPGVELHARAHSRAHTCAGGGEGDPGPIVGGRPENEDSPRFPDVP 251
Query: 217 DRRWGDTP---PGRKPGSPVWGEGSYLSSYPTCPAQAWCSRSALRAPSSS 263
R G +P G +PGS W + +S+ T AQ R P ++
Sbjct: 252 TRPAGPSPFYCEGTEPGSQAWSARAGTASWETAAAQRPDQLEETRPPGAA 301
>gi|239741124 PREDICTED: hypothetical protein XP_002342114 [Homo
sapiens]
Length = 470
Score = 32.3 bits (72), Expect = 0.48
Identities = 45/170 (26%), Positives = 58/170 (34%), Gaps = 10/170 (5%)
Query: 99 LASWEPLVCHTGPGAEGHSRSTQPMHLSGEASTARTCPQEPLRGTPGGALWLGVLRLLLF 158
LA+ L PG S T+ A R P P G LW L
Sbjct: 137 LAAAHGLPASEAPGLRPDSARTRLRLRLASARLPRGLPPAPAAG-----LWRAGCTRLRP 191
Query: 159 KLLLFDLLLTCSCLCDPAGPLPSPATTTRLRALGSHRLHPATETGGR-EATSSPR-PQPR 216
LL +L+ P L + A + G P GGR E SPR P
Sbjct: 192 LLLQPPPMLSPGLAQSPGVELHARAHSRAHTCAGGGEGDPGPIVGGRPENEDSPRFPDVP 251
Query: 217 DRRWGDTP---PGRKPGSPVWGEGSYLSSYPTCPAQAWCSRSALRAPSSS 263
R G +P G +PGS W + +S+ T AQ R P ++
Sbjct: 252 TRPAGPSPFYCEGTEPGSQAWSARAGTASWETAAAQRPDQLEETRPPGAA 301
>gi|121674801 hepatocyte cell adhesion molecule [Homo sapiens]
Length = 416
Score = 32.3 bits (72), Expect = 0.48
Identities = 22/65 (33%), Positives = 25/65 (38%), Gaps = 8/65 (12%)
Query: 206 EATSSPRPQPRDRRWGDTP--------PGRKPGSPVWGEGSYLSSYPTCPAQAWCSRSAL 257
E +P P+PR P PGR PG P+ Y S PA S
Sbjct: 320 ETEENPAPEPRSATEPGPPGYSVSPAVPGRSPGLPIRSARRYPRSPARSPATGRTHSSPP 379
Query: 258 RAPSS 262
RAPSS
Sbjct: 380 RAPSS 384
>gi|7524361 paired box 8 isoform PAX8B [Homo sapiens]
Length = 387
Score = 32.3 bits (72), Expect = 0.48
Identities = 28/81 (34%), Positives = 35/81 (43%), Gaps = 15/81 (18%)
Query: 162 LFDLLLTCSCLCDPAGPLPSPATTTRLRALGSHRLHPATETGGREATSSPRPQPRDRRWG 221
L+ L L S L D L +P+ T R L +H+ +P GRE G
Sbjct: 261 LYPLPLLNSTLDDGKATL-TPSNTPLGRNLSTHQTYPVV--AGREMV------------G 305
Query: 222 DTPPGRKPGSPVWGEGSYLSS 242
T PG P P G+GSY SS
Sbjct: 306 PTLPGYPPHIPTSGQGSYASS 326
>gi|54860079 nadrin isoform 1 [Homo sapiens]
Length = 881
Score = 32.3 bits (72), Expect = 0.48
Identities = 27/94 (28%), Positives = 37/94 (39%), Gaps = 9/94 (9%)
Query: 180 PSPATTTRLRALGSHRLHPATETGGREATSSP--------RPQPRDR-RWGDTPPGRKPG 230
P+P +T L P T GG T+ P RP P+ R R PP + PG
Sbjct: 758 PTPPSTPPLGKQNPSLPAPQTLAGGNPETAQPHAGTLPRPRPVPKPRNRPSVPPPPQPPG 817
Query: 231 SPVWGEGSYLSSYPTCPAQAWCSRSALRAPSSSL 264
G+ S ++ PT S S + P S+
Sbjct: 818 VHSAGDSSLTNTAPTASKIVTDSNSRVSEPHRSI 851
>gi|54860105 nadrin isoform 2 [Homo sapiens]
Length = 803
Score = 32.3 bits (72), Expect = 0.48
Identities = 27/94 (28%), Positives = 37/94 (39%), Gaps = 9/94 (9%)
Query: 180 PSPATTTRLRALGSHRLHPATETGGREATSSP--------RPQPRDR-RWGDTPPGRKPG 230
P+P +T L P T GG T+ P RP P+ R R PP + PG
Sbjct: 680 PTPPSTPPLGKQNPSLPAPQTLAGGNPETAQPHAGTLPRPRPVPKPRNRPSVPPPPQPPG 739
Query: 231 SPVWGEGSYLSSYPTCPAQAWCSRSALRAPSSSL 264
G+ S ++ PT S S + P S+
Sbjct: 740 VHSAGDSSLTNTAPTASKIVTDSNSRVSEPHRSI 773
>gi|148833506 obscurin, cytoskeletal calmodulin and titin-interacting
RhoGEF isoform b [Homo sapiens]
Length = 7968
Score = 31.6 bits (70), Expect = 0.81
Identities = 36/119 (30%), Positives = 46/119 (38%), Gaps = 16/119 (13%)
Query: 173 CDPAGPLPS-PATTTRLRALGSHRLHPA-----TETGGREATSSP-RPQPRDRRWGDTPP 225
C A LPS P+ +R +G HP TGG T+ P RP P D WG P
Sbjct: 6979 CGEAQRLPSAPSGGAPIRDMG----HPQGSKQLPSTGGHPGTAQPERPSP-DSPWGQPAP 7033
Query: 226 GRKP---GSPVWGEGSYLSSYPTCPAQAWCSRSALRAPSSSLGAFFAGDLPPPLQAGAA 281
P +P G + + P CP ++ S AP F PP A A+
Sbjct: 7034 FCHPKQGSAPQEGCSPHPAVAP-CPPGSFPPGSCKEAPLVPSSPFLGQPQAPPAPAKAS 7091
>gi|169169677 PREDICTED: hypothetical protein [Homo sapiens]
Length = 167
Score = 31.6 bits (70), Expect = 0.81
Identities = 32/83 (38%), Positives = 39/83 (46%), Gaps = 15/83 (18%)
Query: 175 PAGPLP-SPATTT-RLRALGSHRLHPATETGGREATSSPRPQPRDRRW-GDTPPGRKPG- 230
PAGP +P T R+RA G R H GGR+A + P RD+R G G++PG
Sbjct: 84 PAGPEEVTPGTARGRVRAEGYGR-HQPKAPGGRQAAPA-MPSNRDQRLAGCGRAGKRPGG 141
Query: 231 ---------SPVWGEGSYLSSYP 244
SPVW S L S P
Sbjct: 142 PNPARAGLSSPVWLVSSPLPSLP 164
>gi|169190076 PREDICTED: hypothetical protein [Homo sapiens]
Length = 161
Score = 31.6 bits (70), Expect = 0.81
Identities = 49/156 (31%), Positives = 61/156 (39%), Gaps = 43/156 (27%)
Query: 121 QPMHLSGEAST--ARTCPQE----PLRGTPG--GALWLGVLRLLLFKLLLFDLLLTCSCL 172
QP H + A+ A CP PL G PG G LW LLL CL
Sbjct: 9 QPPHPNAVAAALHASLCPANRGTCPL-GKPGYPGCLWFQ------------PLLLFPGCL 55
Query: 173 CDPAGPLPSPATTTRLRALGSHRLHPATETGGREATSSPRPQPRDRRWGDTP-PGRKPGS 231
C P GP P T+ + P GR R PRD++ TP G P +
Sbjct: 56 CSPDGPFPRAVFTSAGKG-------PLQTDLGR-----GRVPPRDQQ---TPKSGPCPRA 100
Query: 232 PVWGE----GSYLSSYPTCPAQAWCSRSALRAPSSS 263
PV GS +S+ + +AW +SA AP S
Sbjct: 101 PVASNRQSGGSAVSAPLSGARRAW--KSAFAAPPRS 134
>gi|169166217 PREDICTED: hypothetical protein [Homo sapiens]
Length = 174
Score = 31.6 bits (70), Expect = 0.81
Identities = 30/91 (32%), Positives = 38/91 (41%), Gaps = 17/91 (18%)
Query: 171 CLCDPAGPLPSPATTTRLRA-----LGSHRLHPATETGGREATSSPRPQPRDRRWGDTPP 225
C PAG PS + R L S RL +T+ R+A+ PRP PR G T
Sbjct: 45 CFSTPAGVRPSEEQDSASRPSPFVLLQSGRL--STKRPERQASLLPRPAPR----GST-- 96
Query: 226 GRKPGSPVWGEGSYLSSYPTCPAQAWCSRSA 256
G+ VW G ++ P P CS A
Sbjct: 97 ----GAQVWWAGPGAAAAPPPPGVRQCSALA 123
>gi|4885407 hyperpolarization activated cyclic nucleotide-gated
potassium channel 4 [Homo sapiens]
Length = 1203
Score = 31.2 bits (69), Expect = 1.1
Identities = 29/101 (28%), Positives = 40/101 (39%), Gaps = 25/101 (24%)
Query: 177 GPLPSPATTTRLRALGSHRLHPATETGGREATSSPRPQPRDRRWGDTPPGRKPGSPVWGE 236
GPL +P T R + P + G A+ P R G +PPG PG P
Sbjct: 989 GPLSTPETPPR-------QPEPPSLVAG--ASGGASPVGFTPRGGLSPPGHSPGPP---- 1035
Query: 237 GSYLSSYPTCPAQAWCSRSALRAPSSSLGAFFAGDLPPPLQ 277
++P+ P +A S +L P +S PPP Q
Sbjct: 1036 ----RTFPSAPPRASGSHGSLLLPPAS--------SPPPPQ 1064
>gi|239754368 PREDICTED: hypothetical protein [Homo sapiens]
Length = 336
Score = 31.2 bits (69), Expect = 1.1
Identities = 21/66 (31%), Positives = 24/66 (36%), Gaps = 7/66 (10%)
Query: 176 AGPLPSPATTTRLRALGSHRLHPATETGGREATSSPRPQPRDRRWGDTPPGRKPGSPVWG 235
AGP PSPA TR R L R + P P P TPP + W
Sbjct: 70 AGPSPSPAAPTRPRLLHGRRSAGHVARADVSPPAGPVPAP-------TPPRARNAETPWN 122
Query: 236 EGSYLS 241
S L+
Sbjct: 123 AASLLN 128
>gi|239748915 PREDICTED: hypothetical protein XP_002346855 [Homo
sapiens]
Length = 336
Score = 31.2 bits (69), Expect = 1.1
Identities = 21/66 (31%), Positives = 24/66 (36%), Gaps = 7/66 (10%)
Query: 176 AGPLPSPATTTRLRALGSHRLHPATETGGREATSSPRPQPRDRRWGDTPPGRKPGSPVWG 235
AGP PSPA TR R L R + P P P TPP + W
Sbjct: 70 AGPSPSPAAPTRPRLLHGRRSAGHVARADVSPPAGPVPAP-------TPPRARNAETPWN 122
Query: 236 EGSYLS 241
S L+
Sbjct: 123 AASLLN 128
>gi|239742939 PREDICTED: hypothetical protein XP_002342693 [Homo
sapiens]
Length = 321
Score = 31.2 bits (69), Expect = 1.1
Identities = 21/66 (31%), Positives = 24/66 (36%), Gaps = 7/66 (10%)
Query: 176 AGPLPSPATTTRLRALGSHRLHPATETGGREATSSPRPQPRDRRWGDTPPGRKPGSPVWG 235
AGP PSPA TR R L R + P P P TPP + W
Sbjct: 70 AGPSPSPAAPTRPRLLHGRRSAGHVARADVSPPAGPVPAP-------TPPRARNAETPWN 122
Query: 236 EGSYLS 241
S L+
Sbjct: 123 AASLLN 128
>gi|98986461 neurogenic differentiation 2 [Homo sapiens]
Length = 382
Score = 31.2 bits (69), Expect = 1.1
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 110 GPGAEGHSRSTQPMHLSGEASTARTCPQEPLRGTPGG 146
GPGA G +R+ +P+ L GE T T + G GG
Sbjct: 45 GPGAPGPARAAKPVPLRGEEGTEATLAEVKEEGELGG 81
>gi|30425563 reticulon 4 receptor-like 2 [Homo sapiens]
Length = 420
Score = 31.2 bits (69), Expect = 1.1
Identities = 31/112 (27%), Positives = 40/112 (35%), Gaps = 20/112 (17%)
Query: 173 CDPAGPLPSPATTTRLRALGSHRLHPATETGGREATSS------PRPQPRDRRWGDTPPG 226
C PA P P + R + +H L+ E G A S P R R+ GD P
Sbjct: 310 CPPAAPT-RPGSRARGNSSSNH-LYGVAEAGAPPADPSTLYRDLPAEDSRGRQGGDAPT- 366
Query: 227 RKPGSPVWGEGSYLSSY--PTCPAQAWCSRSALRAPSSSLGAFFAGDLPPPL 276
E Y Y + C +A +AP S G + LP PL
Sbjct: 367 ---------EDDYWGGYGGEDQRGEQMCPGAACQAPPDSRGPALSAGLPSPL 409
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 31.2 bits (69), Expect = 1.1
Identities = 16/41 (39%), Positives = 19/41 (46%)
Query: 192 GSHRLHPATETGGREATSSPRPQPRDRRWGDTPPGRKPGSP 232
G R P+ R + SP P PR RR PP R+ SP
Sbjct: 544 GRRRRSPSPPPTRRRRSPSPAPPPRRRRTPTPPPRRRTPSP 584
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.136 0.451
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,696,168
Number of Sequences: 37866
Number of extensions: 980051
Number of successful extensions: 3703
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 128
Number of HSP's that attempted gapping in prelim test: 3596
Number of HSP's gapped (non-prelim): 233
length of query: 281
length of database: 18,247,518
effective HSP length: 101
effective length of query: 180
effective length of database: 14,423,052
effective search space: 2596149360
effective search space used: 2596149360
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.