Guide to the Human Genome
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Name: LOC100132646 Sequence: fasta or formatted (161aa) NCBI GI: 169190076
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.8         19           3
 C cysteine            4.3          7           1
 D aspartate           1.9          3           1
 E glutamate           0.6          1           1
 F phenylalanine       3.1          5           1
 G glycine            13.0         21           3
 H histidine           1.9          3           1
 I isoleucine          0.0          0           0
 K lysine              3.7          6           1
 L leucine             8.1         13           3
 M methionine          0.6          1           1
 N asparagine          2.5          4           1
 P proline            16.1         26           2
 Q glutamine           4.3          7           2
 R arginine           11.2         18           2
 S serine              6.8         11           1
 T threonine           3.7          6           1
 V valine              3.7          6           1
 W tryptophan          1.9          3           1
 Y tyrosine            0.6          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC728449             0.982   PREDICTED: hypothetical protein 
FOXE1                 0.043   forkhead box E1 
LOC728597             0.034   PREDICTED: doublecortin domain-containing protein E...
LOC728597             0.034   PREDICTED: doublecortin domain-containing protein E...
LOC100127930          0.031   PREDICTED: hypothetical protein 
LOC100130465          0.031   PREDICTED: hypothetical protein 
LOC100130465          0.031   PREDICTED: hypothetical protein 
LOC100130465          0.031   PREDICTED: hypothetical protein 
GPR153                0.031   G protein-coupled receptor 153 
TMEM181               0.028   G protein-coupled receptor 178 
TAF4                  0.025   TBP-associated factor 4 
RBMX                  0.025   RNA binding motif protein, X-linked 
RERE                  0.025   atrophin-1 like protein isoform b 
RERE                  0.025   atrophin-1 like protein isoform a 
RERE                  0.025   atrophin-1 like protein isoform a 
LOC100291455          0.025   PREDICTED: hypothetical protein XP_002346892 
LOC100288744          0.025   PREDICTED: hypothetical protein XP_002342752 
LOC100288744          0.025   PREDICTED: hypothetical protein 
BSN                   0.025   bassoon protein 
LOC643355             0.025   PREDICTED: hypothetical protein 
LOC100292745          0.022   PREDICTED: hypothetical protein 
LOC100290074          0.022   PREDICTED: hypothetical protein XP_002346855 
LOC100288496          0.022   PREDICTED: hypothetical protein XP_002342747 
LOC100287034          0.022   PREDICTED: hypothetical protein XP_002342693 
GLI4                  0.022   GLI-Kruppel family member GLI4 
YLPM1                 0.022   YLP motif containing 1 
LOC100293375          0.022   PREDICTED: hypothetical protein 
LOC100291356          0.022   PREDICTED: hypothetical protein XP_002347017 
LOC100286907          0.022   PREDICTED: hypothetical protein XP_002342878 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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