Guide to the Human Genome
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Name: LOC100290074 Sequence: fasta or formatted (336aa) NCBI GI: 239748915
Description:

PREDICTED: hypothetical protein XP_002346855

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.6         49           3
 C cysteine            1.5          5           2
 D aspartate           1.8          6           1
 E glutamate           5.1         17           2
 F phenylalanine       0.9          3           1
 G glycine            13.4         45           2
 H histidine           2.4          8           1
 I isoleucine          0.9          3           1
 K lysine              1.8          6           1
 L leucine             8.6         29           2
 M methionine          1.2          4           1
 N asparagine          2.1          7           1
 P proline            14.9         50           2
 Q glutamine           2.4          8           1
 R arginine           13.4         45           3
 S serine              7.1         24           2
 T threonine           3.3         11           1
 V valine              2.7          9           1
 W tryptophan          1.8          6           1
 Y tyrosine            0.3          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002346855 
LOC100292745          1.000   PREDICTED: hypothetical protein 
LOC100287034          0.960   PREDICTED: hypothetical protein XP_002342693 
TAF4                  0.049   TBP-associated factor 4 
LOC100292184          0.044   PREDICTED: hypothetical protein 
CASKIN1               0.044   CASK interacting protein 1 
LOC643355             0.043   PREDICTED: hypothetical protein 
B4GALNT4              0.041   beta 1,4-N-acetylgalactosaminyltransferase-transfera...
SCARF2                0.040   scavenger receptor class F, member 2 isoform 1 [Homo...
SCARF2                0.040   scavenger receptor class F, member 2 isoform 2 [Homo...
LOC100127891          0.037   PREDICTED: hypothetical protein 
LOC100127891          0.037   PREDICTED: similar to hCG2042508 
LOC100127891          0.037   PREDICTED: similar to hCG2042508 
LOC100127891          0.037   PREDICTED: similar to hCG2042508 
PRB1                  0.037   proline-rich protein BstNI subfamily 1 isoform 1 pre...
PRB4                  0.036   proline-rich protein BstNI subfamily 4 precursor [Ho...
LOC100288573          0.034   PREDICTED: hypothetical protein XP_002343799 
NACA                  0.034   nascent polypeptide-associated complex alpha subuni...
LOC100287920          0.034   PREDICTED: hypothetical protein XP_002344198 
ATXN2                 0.033   ataxin 2 
SYNPO                 0.033   synaptopodin isoform A 
FLJ37078              0.033   hypothetical protein LOC222183 
PRB3                  0.033   proline-rich protein BstNI subfamily 3 precursor [H...
PRB2                  0.033   proline-rich protein BstNI subfamily 2 
DACT3                 0.033   thymus expressed gene 3-like 
JSRP1                 0.031   junctional sarcoplasmic reticulum protein 1 
LOC100287063          0.031   PREDICTED: hypothetical protein 
WIPF1                 0.031   WAS/WASL interacting protein family, member 1 [Homo...
WIPF1                 0.031   WAS/WASL interacting protein family, member 1 
ARHGAP23              0.030   Rho GTPase activating protein 23 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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