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Search of human proteins with 148536864
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|148536864 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin d2 isoform 1 [Homo sapiens]
(531 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|148536864 SWI/SNF-related matrix-associated actin-dependent r... 1081 0.0
gi|148536862 SWI/SNF-related matrix-associated actin-dependent r... 1025 0.0
gi|21264353 SWI/SNF related, matrix associated, actin dependent ... 670 0.0
gi|51477704 SWI/SNF related, matrix associated, actin dependent ... 670 0.0
gi|51477702 SWI/SNF related, matrix associated, actin dependent ... 667 0.0
gi|133908629 SWI/SNF-related matrix-associated actin-dependent r... 650 0.0
gi|133908631 SWI/SNF-related matrix-associated actin-dependent r... 565 e-161
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens] 62 1e-09
gi|7706501 WW domain binding protein 11 [Homo sapiens] 61 3e-09
gi|110832843 TBP-associated factor 4 [Homo sapiens] 54 3e-07
gi|190343021 Sec24-related protein D [Homo sapiens] 54 4e-07
gi|162329583 cleavage and polyadenylation specific factor 6, 68 ... 54 5e-07
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 52 1e-06
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 52 1e-06
gi|208431824 forkhead box I3 [Homo sapiens] 52 1e-06
gi|7706469 Kruppel-like factor [Homo sapiens] 52 1e-06
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 52 2e-06
gi|4507869 vasodilator-stimulated phosphoprotein [Homo sapiens] 51 2e-06
gi|4507127 small nuclear ribonucleoprotein polypeptide C [Homo s... 51 3e-06
gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens] 50 4e-06
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 50 5e-06
gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens] 50 5e-06
gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens] 50 5e-06
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 50 7e-06
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 50 7e-06
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 50 7e-06
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 50 7e-06
gi|41350201 epsin 1 isoform c [Homo sapiens] 50 7e-06
gi|194248095 epsin 1 isoform b [Homo sapiens] 50 7e-06
gi|194272148 epsin 1 isoform a [Homo sapiens] 50 7e-06
>gi|148536864 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin d2 isoform 1 [Homo sapiens]
Length = 531
Score = 1081 bits (2796), Expect = 0.0
Identities = 531/531 (100%), Positives = 531/531 (100%)
Query: 1 MSGRGAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGPALRGPGPAGGVGGPGAAAFR 60
MSGRGAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGPALRGPGPAGGVGGPGAAAFR
Sbjct: 1 MSGRGAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGPALRGPGPAGGVGGPGAAAFR 60
Query: 61 PMGPAGPAAQYQRPGMSPGNRMPMAGLQVGPPAGSPFGAAAPLRPGMPPTMMDPFRKRLL 120
PMGPAGPAAQYQRPGMSPGNRMPMAGLQVGPPAGSPFGAAAPLRPGMPPTMMDPFRKRLL
Sbjct: 61 PMGPAGPAAQYQRPGMSPGNRMPMAGLQVGPPAGSPFGAAAPLRPGMPPTMMDPFRKRLL 120
Query: 121 VPQAQPPMPAQRRGLKRRKMADKVLPQRIRELVPESQAYMDLLAFERKLDQTIARKRMEI 180
VPQAQPPMPAQRRGLKRRKMADKVLPQRIRELVPESQAYMDLLAFERKLDQTIARKRMEI
Sbjct: 121 VPQAQPPMPAQRRGLKRRKMADKVLPQRIRELVPESQAYMDLLAFERKLDQTIARKRMEI 180
Query: 181 QEAIKKPLTQKRKLRIYISNTFSPSKAEGDSAGTAGTPGGTPAGDKVASWELRVEGKLLD 240
QEAIKKPLTQKRKLRIYISNTFSPSKAEGDSAGTAGTPGGTPAGDKVASWELRVEGKLLD
Sbjct: 181 QEAIKKPLTQKRKLRIYISNTFSPSKAEGDSAGTAGTPGGTPAGDKVASWELRVEGKLLD 240
Query: 241 DPSKQKRKFSSFFKSLVIELDKELYGPDNHLVEWHRMPTTQETDGFQVKRPGDLNVKCTL 300
DPSKQKRKFSSFFKSLVIELDKELYGPDNHLVEWHRMPTTQETDGFQVKRPGDLNVKCTL
Sbjct: 241 DPSKQKRKFSSFFKSLVIELDKELYGPDNHLVEWHRMPTTQETDGFQVKRPGDLNVKCTL 300
Query: 301 LLMLDHQPPQYKLDPRLARLLGVHTQTRAAIMQALWLYIKHNQLQDGHEREYINCNRYFR 360
LLMLDHQPPQYKLDPRLARLLGVHTQTRAAIMQALWLYIKHNQLQDGHEREYINCNRYFR
Sbjct: 301 LLMLDHQPPQYKLDPRLARLLGVHTQTRAAIMQALWLYIKHNQLQDGHEREYINCNRYFR 360
Query: 361 QIFSCGRLRFSEIPMKLAGLLQHPDPIVINHVISVDPNDQKKTACYDIDVEVDDPLKAQM 420
QIFSCGRLRFSEIPMKLAGLLQHPDPIVINHVISVDPNDQKKTACYDIDVEVDDPLKAQM
Sbjct: 361 QIFSCGRLRFSEIPMKLAGLLQHPDPIVINHVISVDPNDQKKTACYDIDVEVDDPLKAQM 420
Query: 421 SNFLASTTNQQEIASLDVKIHETIESINQLKTQRDFMLSFSTDPQDFIQEWLRSQRRDLK 480
SNFLASTTNQQEIASLDVKIHETIESINQLKTQRDFMLSFSTDPQDFIQEWLRSQRRDLK
Sbjct: 421 SNFLASTTNQQEIASLDVKIHETIESINQLKTQRDFMLSFSTDPQDFIQEWLRSQRRDLK 480
Query: 481 IITDVIGNPEEERRAAFYHQPWAQEAVGRHIFAKVQQRRQELEQVLGIRLT 531
IITDVIGNPEEERRAAFYHQPWAQEAVGRHIFAKVQQRRQELEQVLGIRLT
Sbjct: 481 IITDVIGNPEEERRAAFYHQPWAQEAVGRHIFAKVQQRRQELEQVLGIRLT 531
>gi|148536862 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin d2 isoform 2 [Homo sapiens]
Length = 510
Score = 1025 bits (2650), Expect = 0.0
Identities = 510/531 (96%), Positives = 510/531 (96%), Gaps = 21/531 (3%)
Query: 1 MSGRGAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGPALRGPGPAGGVGGPGAAAFR 60
MSGRGAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGPALRGPGPA
Sbjct: 1 MSGRGAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGPALRGPGPA------------ 48
Query: 61 PMGPAGPAAQYQRPGMSPGNRMPMAGLQVGPPAGSPFGAAAPLRPGMPPTMMDPFRKRLL 120
QYQRPGMSPGNRMPMAGLQVGPPAGSPFGAAAPLRPGMPPTMMDPFRKRLL
Sbjct: 49 ---------QYQRPGMSPGNRMPMAGLQVGPPAGSPFGAAAPLRPGMPPTMMDPFRKRLL 99
Query: 121 VPQAQPPMPAQRRGLKRRKMADKVLPQRIRELVPESQAYMDLLAFERKLDQTIARKRMEI 180
VPQAQPPMPAQRRGLKRRKMADKVLPQRIRELVPESQAYMDLLAFERKLDQTIARKRMEI
Sbjct: 100 VPQAQPPMPAQRRGLKRRKMADKVLPQRIRELVPESQAYMDLLAFERKLDQTIARKRMEI 159
Query: 181 QEAIKKPLTQKRKLRIYISNTFSPSKAEGDSAGTAGTPGGTPAGDKVASWELRVEGKLLD 240
QEAIKKPLTQKRKLRIYISNTFSPSKAEGDSAGTAGTPGGTPAGDKVASWELRVEGKLLD
Sbjct: 160 QEAIKKPLTQKRKLRIYISNTFSPSKAEGDSAGTAGTPGGTPAGDKVASWELRVEGKLLD 219
Query: 241 DPSKQKRKFSSFFKSLVIELDKELYGPDNHLVEWHRMPTTQETDGFQVKRPGDLNVKCTL 300
DPSKQKRKFSSFFKSLVIELDKELYGPDNHLVEWHRMPTTQETDGFQVKRPGDLNVKCTL
Sbjct: 220 DPSKQKRKFSSFFKSLVIELDKELYGPDNHLVEWHRMPTTQETDGFQVKRPGDLNVKCTL 279
Query: 301 LLMLDHQPPQYKLDPRLARLLGVHTQTRAAIMQALWLYIKHNQLQDGHEREYINCNRYFR 360
LLMLDHQPPQYKLDPRLARLLGVHTQTRAAIMQALWLYIKHNQLQDGHEREYINCNRYFR
Sbjct: 280 LLMLDHQPPQYKLDPRLARLLGVHTQTRAAIMQALWLYIKHNQLQDGHEREYINCNRYFR 339
Query: 361 QIFSCGRLRFSEIPMKLAGLLQHPDPIVINHVISVDPNDQKKTACYDIDVEVDDPLKAQM 420
QIFSCGRLRFSEIPMKLAGLLQHPDPIVINHVISVDPNDQKKTACYDIDVEVDDPLKAQM
Sbjct: 340 QIFSCGRLRFSEIPMKLAGLLQHPDPIVINHVISVDPNDQKKTACYDIDVEVDDPLKAQM 399
Query: 421 SNFLASTTNQQEIASLDVKIHETIESINQLKTQRDFMLSFSTDPQDFIQEWLRSQRRDLK 480
SNFLASTTNQQEIASLDVKIHETIESINQLKTQRDFMLSFSTDPQDFIQEWLRSQRRDLK
Sbjct: 400 SNFLASTTNQQEIASLDVKIHETIESINQLKTQRDFMLSFSTDPQDFIQEWLRSQRRDLK 459
Query: 481 IITDVIGNPEEERRAAFYHQPWAQEAVGRHIFAKVQQRRQELEQVLGIRLT 531
IITDVIGNPEEERRAAFYHQPWAQEAVGRHIFAKVQQRRQELEQVLGIRLT
Sbjct: 460 IITDVIGNPEEERRAAFYHQPWAQEAVGRHIFAKVQQRRQELEQVLGIRLT 510
>gi|21264353 SWI/SNF related, matrix associated, actin dependent
regulator of chromatin, subfamily d, member 3 isoform 1
[Homo sapiens]
Length = 470
Score = 670 bits (1728), Expect = 0.0
Identities = 335/476 (70%), Positives = 389/476 (81%), Gaps = 24/476 (5%)
Query: 67 PAAQYQRPGMSPGNRMPMAGLQVGPPAGSPFGAAAPLRPGMPPTMMDPFRKRLLVPQAQ- 125
P QRPGM G RMP G +GPP GSP+ + +RPG+ P M+P RKR P Q
Sbjct: 8 PPTVVQRPGMPSGARMPHQGAPMGPP-GSPYMGSPAVRPGLAPAGMEPARKRAAPPPGQS 66
Query: 126 ---------PPMPAQRRGLKRRKMADKVLPQRIRELVPESQAYMDLLAFERKLDQTIARK 176
P PA+ R KRRKMADK+LPQRIRELVPESQAYMDLLAFERKLDQTI RK
Sbjct: 67 QAQSQGQPVPTAPARSRSAKRRKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRK 126
Query: 177 RMEIQEAIKKPLTQKRKLRIYISNTFSPSKAEG-DSAGTAGTPGGTPAGDKVASWELRVE 235
R++IQEA+K+P+ QKRKLR+YISNTF+P+K + DS G+ +ASWELRVE
Sbjct: 127 RVDIQEALKRPMKQKRKLRLYISNTFNPAKPDAEDSDGS------------IASWELRVE 174
Query: 236 GKLLDDPSKQKRKFSSFFKSLVIELDKELYGPDNHLVEWHRMPTTQETDGFQVKRPGDLN 295
GKLLDDPSKQKRKFSSFFKSLVIELDK+LYGPDNHLVEWHR PTTQETDGFQVKRPGDL+
Sbjct: 175 GKLLDDPSKQKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDLS 234
Query: 296 VKCTLLLMLDHQPPQYKLDPRLARLLGVHTQTRAAIMQALWLYIKHNQLQDGHEREYINC 355
V+CTLLLMLD+QPPQ+KLDPRLARLLG+HTQ+R+AI+QALW Y+K N+LQD H++EYIN
Sbjct: 235 VRCTLLLMLDYQPPQFKLDPRLARLLGLHTQSRSAIVQALWQYVKTNRLQDSHDKEYING 294
Query: 356 NRYFRQIFSCGRLRFSEIPMKLAGLLQHPDPIVINHVISVDPNDQKKTACYDIDVEVDDP 415
++YF+QIF C RL+FSEIP +L LL PDPIVINHVISVDP+DQKKTACYDIDVEV++P
Sbjct: 295 DKYFQQIFDCPRLKFSEIPQRLTALLLPPDPIVINHVISVDPSDQKKTACYDIDVEVEEP 354
Query: 416 LKAQMSNFLASTTNQQEIASLDVKIHETIESINQLKTQRDFMLSFSTDPQDFIQEWLRSQ 475
LK QMS+FL ST NQQEI++LD KIHETIESINQLK QRDFMLSFS DP+ ++Q+ LRSQ
Sbjct: 355 LKGQMSSFLLSTANQQEISALDSKIHETIESINQLKIQRDFMLSFSRDPKGYVQDLLRSQ 414
Query: 476 RRDLKIITDVIGNPEEERRAAFYHQPWAQEAVGRHIFAKVQQRRQELEQVLGIRLT 531
RDLK++TDV GNPEEERRA FYHQPW+QEAV R+ + K+QQRRQELEQ L +R T
Sbjct: 415 SRDLKVMTDVAGNPEEERRAEFYHQPWSQEAVSRYFYCKIQQRRQELEQSLVVRNT 470
>gi|51477704 SWI/SNF related, matrix associated, actin dependent
regulator of chromatin, subfamily d, member 3 isoform 1
[Homo sapiens]
Length = 470
Score = 670 bits (1728), Expect = 0.0
Identities = 335/476 (70%), Positives = 389/476 (81%), Gaps = 24/476 (5%)
Query: 67 PAAQYQRPGMSPGNRMPMAGLQVGPPAGSPFGAAAPLRPGMPPTMMDPFRKRLLVPQAQ- 125
P QRPGM G RMP G +GPP GSP+ + +RPG+ P M+P RKR P Q
Sbjct: 8 PPTVVQRPGMPSGARMPHQGAPMGPP-GSPYMGSPAVRPGLAPAGMEPARKRAAPPPGQS 66
Query: 126 ---------PPMPAQRRGLKRRKMADKVLPQRIRELVPESQAYMDLLAFERKLDQTIARK 176
P PA+ R KRRKMADK+LPQRIRELVPESQAYMDLLAFERKLDQTI RK
Sbjct: 67 QAQSQGQPVPTAPARSRSAKRRKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRK 126
Query: 177 RMEIQEAIKKPLTQKRKLRIYISNTFSPSKAEG-DSAGTAGTPGGTPAGDKVASWELRVE 235
R++IQEA+K+P+ QKRKLR+YISNTF+P+K + DS G+ +ASWELRVE
Sbjct: 127 RVDIQEALKRPMKQKRKLRLYISNTFNPAKPDAEDSDGS------------IASWELRVE 174
Query: 236 GKLLDDPSKQKRKFSSFFKSLVIELDKELYGPDNHLVEWHRMPTTQETDGFQVKRPGDLN 295
GKLLDDPSKQKRKFSSFFKSLVIELDK+LYGPDNHLVEWHR PTTQETDGFQVKRPGDL+
Sbjct: 175 GKLLDDPSKQKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDLS 234
Query: 296 VKCTLLLMLDHQPPQYKLDPRLARLLGVHTQTRAAIMQALWLYIKHNQLQDGHEREYINC 355
V+CTLLLMLD+QPPQ+KLDPRLARLLG+HTQ+R+AI+QALW Y+K N+LQD H++EYIN
Sbjct: 235 VRCTLLLMLDYQPPQFKLDPRLARLLGLHTQSRSAIVQALWQYVKTNRLQDSHDKEYING 294
Query: 356 NRYFRQIFSCGRLRFSEIPMKLAGLLQHPDPIVINHVISVDPNDQKKTACYDIDVEVDDP 415
++YF+QIF C RL+FSEIP +L LL PDPIVINHVISVDP+DQKKTACYDIDVEV++P
Sbjct: 295 DKYFQQIFDCPRLKFSEIPQRLTALLLPPDPIVINHVISVDPSDQKKTACYDIDVEVEEP 354
Query: 416 LKAQMSNFLASTTNQQEIASLDVKIHETIESINQLKTQRDFMLSFSTDPQDFIQEWLRSQ 475
LK QMS+FL ST NQQEI++LD KIHETIESINQLK QRDFMLSFS DP+ ++Q+ LRSQ
Sbjct: 355 LKGQMSSFLLSTANQQEISALDSKIHETIESINQLKIQRDFMLSFSRDPKGYVQDLLRSQ 414
Query: 476 RRDLKIITDVIGNPEEERRAAFYHQPWAQEAVGRHIFAKVQQRRQELEQVLGIRLT 531
RDLK++TDV GNPEEERRA FYHQPW+QEAV R+ + K+QQRRQELEQ L +R T
Sbjct: 415 SRDLKVMTDVAGNPEEERRAEFYHQPWSQEAVSRYFYCKIQQRRQELEQSLVVRNT 470
>gi|51477702 SWI/SNF related, matrix associated, actin dependent
regulator of chromatin, subfamily d, member 3 isoform 2
[Homo sapiens]
Length = 483
Score = 667 bits (1720), Expect = 0.0
Identities = 333/470 (70%), Positives = 387/470 (82%), Gaps = 24/470 (5%)
Query: 73 RPGMSPGNRMPMAGLQVGPPAGSPFGAAAPLRPGMPPTMMDPFRKRLLVPQAQ------- 125
RPGM G RMP G +GPP GSP+ + +RPG+ P M+P RKR P Q
Sbjct: 27 RPGMPSGARMPHQGAPMGPP-GSPYMGSPAVRPGLAPAGMEPARKRAAPPPGQSQAQSQG 85
Query: 126 ---PPMPAQRRGLKRRKMADKVLPQRIRELVPESQAYMDLLAFERKLDQTIARKRMEIQE 182
P PA+ R KRRKMADK+LPQRIRELVPESQAYMDLLAFERKLDQTI RKR++IQE
Sbjct: 86 QPVPTAPARSRSAKRRKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRVDIQE 145
Query: 183 AIKKPLTQKRKLRIYISNTFSPSKAEG-DSAGTAGTPGGTPAGDKVASWELRVEGKLLDD 241
A+K+P+ QKRKLR+YISNTF+P+K + DS G+ +ASWELRVEGKLLDD
Sbjct: 146 ALKRPMKQKRKLRLYISNTFNPAKPDAEDSDGS------------IASWELRVEGKLLDD 193
Query: 242 PSKQKRKFSSFFKSLVIELDKELYGPDNHLVEWHRMPTTQETDGFQVKRPGDLNVKCTLL 301
PSKQKRKFSSFFKSLVIELDK+LYGPDNHLVEWHR PTTQETDGFQVKRPGDL+V+CTLL
Sbjct: 194 PSKQKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDLSVRCTLL 253
Query: 302 LMLDHQPPQYKLDPRLARLLGVHTQTRAAIMQALWLYIKHNQLQDGHEREYINCNRYFRQ 361
LMLD+QPPQ+KLDPRLARLLG+HTQ+R+AI+QALW Y+K N+LQD H++EYIN ++YF+Q
Sbjct: 254 LMLDYQPPQFKLDPRLARLLGLHTQSRSAIVQALWQYVKTNRLQDSHDKEYINGDKYFQQ 313
Query: 362 IFSCGRLRFSEIPMKLAGLLQHPDPIVINHVISVDPNDQKKTACYDIDVEVDDPLKAQMS 421
IF C RL+FSEIP +L LL PDPIVINHVISVDP+DQKKTACYDIDVEV++PLK QMS
Sbjct: 314 IFDCPRLKFSEIPQRLTALLLPPDPIVINHVISVDPSDQKKTACYDIDVEVEEPLKGQMS 373
Query: 422 NFLASTTNQQEIASLDVKIHETIESINQLKTQRDFMLSFSTDPQDFIQEWLRSQRRDLKI 481
+FL ST NQQEI++LD KIHETIESINQLK QRDFMLSFS DP+ ++Q+ LRSQ RDLK+
Sbjct: 374 SFLLSTANQQEISALDSKIHETIESINQLKIQRDFMLSFSRDPKGYVQDLLRSQSRDLKV 433
Query: 482 ITDVIGNPEEERRAAFYHQPWAQEAVGRHIFAKVQQRRQELEQVLGIRLT 531
+TDV GNPEEERRA FYHQPW+QEAV R+ + K+QQRRQELEQ L +R T
Sbjct: 434 MTDVAGNPEEERRAEFYHQPWSQEAVSRYFYCKIQQRRQELEQSLVVRNT 483
>gi|133908629 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin d1 isoform a [Homo sapiens]
Length = 515
Score = 650 bits (1676), Expect = 0.0
Identities = 341/531 (64%), Positives = 404/531 (76%), Gaps = 38/531 (7%)
Query: 14 LSPGGGAVAAALGAPPPPAGPGMLPGPALRGPGPAGGVGGPGAAAFR-PMGPAGPAAQYQ 72
++P GGA A+ GPG PGP +R GPA PG +R PM P A Y
Sbjct: 10 VAPSGGAGASGGAGAAAALGPGGTPGPPVR-MGPA-----PGQGLYRSPM----PGAAYP 59
Query: 73 RPGMSPGNRMPMAGLQVGPPAGSPFGAAAPLRPGMPPTMMDPFRKRLLVPQAQP----PM 128
RPGM PG+RM G +GPP +G +RPG+ + MD RKR Q Q +
Sbjct: 60 RPGMLPGSRMTPQGPSMGPPG---YGGNPSVRPGLAQSGMDQSRKRPAPQQIQQVQQQAV 116
Query: 129 PAQRRGLKRRKMADKVLPQRIRELVPESQAYMDLLAFERKLDQTIARKRMEIQEAIKKPL 188
+ K++KMADK+LPQRIRELVPESQAYMDLLAFERKLDQTI RKR++IQEA+K+P+
Sbjct: 117 QNRNHNAKKKKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPI 176
Query: 189 TQKRKLRIYISNTFSPSKAEG-DSAGTAGTPGGTPAGDKVASWELRVEGKLLDDPS---- 243
QKRKLRI+ISNTF+P+K++ D GT VASWELRVEG+LL+D +
Sbjct: 177 KQKRKLRIFISNTFNPAKSDAEDGEGT------------VASWELRVEGRLLEDSALSKY 224
Query: 244 ---KQKRKFSSFFKSLVIELDKELYGPDNHLVEWHRMPTTQETDGFQVKRPGDLNVKCTL 300
KQKRKFSSFFKSLVIELDK+LYGPDNHLVEWHR TTQETDGFQVKRPGD+NV+CT+
Sbjct: 225 DATKQKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVNVRCTV 284
Query: 301 LLMLDHQPPQYKLDPRLARLLGVHTQTRAAIMQALWLYIKHNQLQDGHEREYINCNRYFR 360
LLMLD+QPPQ+KLDPRLARLLG+HTQTR I+QALW YIK ++LQD HERE++ C++Y +
Sbjct: 285 LLMLDYQPPQFKLDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQ 344
Query: 361 QIFSCGRLRFSEIPMKLAGLLQHPDPIVINHVISVDPNDQKKTACYDIDVEVDDPLKAQM 420
QIF R++FSEIP +L LL P+PI+INHVISVDPNDQKKTACYDIDVEVDD LK QM
Sbjct: 345 QIFESQRMKFSEIPQRLHALLMPPEPIIINHVISVDPNDQKKTACYDIDVEVDDTLKTQM 404
Query: 421 SNFLASTTNQQEIASLDVKIHETIESINQLKTQRDFMLSFSTDPQDFIQEWLRSQRRDLK 480
++FL ST +QQEIA+LD KIHETIE+INQLKTQR+FMLSF+ DPQ FI +WL+SQ RDLK
Sbjct: 405 NSFLLSTASQQEIATLDNKIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLK 464
Query: 481 IITDVIGNPEEERRAAFYHQPWAQEAVGRHIFAKVQQRRQELEQVLGIRLT 531
+TDV+GNPEEERRA FY QPWAQEAV R+ ++KVQQRRQELEQ LGIR T
Sbjct: 465 TMTDVVGNPEEERRAEFYFQPWAQEAVCRYFYSKVQQRRQELEQALGIRNT 515
>gi|133908631 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin d1 isoform b [Homo sapiens]
Length = 474
Score = 565 bits (1455), Expect = e-161
Identities = 309/531 (58%), Positives = 367/531 (69%), Gaps = 79/531 (14%)
Query: 14 LSPGGGAVAAALGAPPPPAGPGMLPGPALRGPGPAGGVGGPGAAAFR-PMGPAGPAAQYQ 72
++P GGA A+ GPG PGP +R GPA PG +R PM P A Y
Sbjct: 10 VAPSGGAGASGGAGAAAALGPGGTPGPPVR-MGPA-----PGQGLYRSPM----PGAAYP 59
Query: 73 RPGMSPGNRMPMAGLQVGPPAGSPFGAAAPLRPGMPPTMMDPFRKRLLVPQAQP----PM 128
RPGM PG+RM G +GPP +G +RPG+ + MD RKR Q Q +
Sbjct: 60 RPGMLPGSRMTPQGPSMGPPG---YGGNPSVRPGLAQSGMDQSRKRPAPQQIQQVQQQAV 116
Query: 129 PAQRRGLKRRKMADKVLPQRIRELVPESQAYMDLLAFERKLDQTIARKRMEIQEAIKKPL 188
+ K++KMADK+LPQRIRELVPESQAYMDLLAFERKLDQTI RKR++IQEA+K+P+
Sbjct: 117 QNRNHNAKKKKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPI 176
Query: 189 TQKRKLRIYISNTFSPSKAEG-DSAGTAGTPGGTPAGDKVASWELRVEGKLLDDPS---- 243
QKRKLRI+ISNTF+P+K++ D GT VASWELRVEG+LL+D +
Sbjct: 177 KQKRKLRIFISNTFNPAKSDAEDGEGT------------VASWELRVEGRLLEDSALSKY 224
Query: 244 ---KQKRKFSSFFKSLVIELDKELYGPDNHLVEWHRMPTTQETDGFQVKRPGDLNVKCTL 300
KQKRKFSSFFKSLVIELDK+LYGPDNHLVEWHR TTQETDGFQVKRPGD+NV+CT+
Sbjct: 225 DATKQKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVNVRCTV 284
Query: 301 LLMLDHQPPQYKLDPRLARLLGVHTQTRAAIMQALWLYIKHNQLQDGHEREYINCNRYFR 360
LLMLD+QPPQ+KLDPRLARLLG+HTQTR I+QALW YIK ++LQD HERE++ C++Y +
Sbjct: 285 LLMLDYQPPQFKLDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQ 344
Query: 361 QIFSCGRLRFSEIPMKLAGLLQHPDPIVINHVISVDPNDQKKTACYDIDVEVDDPLKAQM 420
QIF R++FSEIP +L LL P+PI+INHVISVDPNDQKKTACYDIDVEVDD LK QM
Sbjct: 345 QIFESQRMKFSEIPQRLHALLMPPEPIIINHVISVDPNDQKKTACYDIDVEVDDTLKTQM 404
Query: 421 SNFLASTTNQQEIASLDVKIHETIESINQLKTQRDFMLSFSTDPQDFIQEWLRSQRRDLK 480
++FL ST +QQEIA+L D K
Sbjct: 405 NSFLLSTASQQEIATL-----------------------------------------DNK 423
Query: 481 IITDVIGNPEEERRAAFYHQPWAQEAVGRHIFAKVQQRRQELEQVLGIRLT 531
+TDV+GNPEEERRA FY QPWAQEAV R+ ++KVQQRRQELEQ LGIR T
Sbjct: 424 TMTDVVGNPEEERRAEFYFQPWAQEAVCRYFYSKVQQRRQELEQALGIRNT 474
>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
Length = 538
Score = 62.4 bits (150), Expect = 1e-09
Identities = 52/151 (34%), Positives = 61/151 (40%), Gaps = 11/151 (7%)
Query: 10 PLPPLSPGGGAVAAALGAPPPPAGPGMLPGPALRGPGPAGGVGGPGAAAFRPMGPA---- 65
P PP +P G AAA APPP P P P + PA AAA P P
Sbjct: 109 PAPPRAPRGAPAAAAAAAPPPTPAPPPPPAP-VAAAAPARAPRAAAAAATAPPSPGPAQP 167
Query: 66 GPAAQYQRPGMSPGNRMPMAGLQVGPPAG---SPFGAAAPLRPGMPPTMMDPFRKRLLVP 122
GP AQ P +P P A V PPAG +P A A P +PP P + P
Sbjct: 168 GPRAQRAAPLAAP-PPAPAAPPAVAPPAGPRRAPPPAVAAREPPLPPPPQPPAPPQQQQP 226
Query: 123 QAQPPMPAQRRGLKRRKMADKVLPQRIRELV 153
P P G R A + P +RE+V
Sbjct: 227 PPPQPQPPPEGGAVRAGGAAR--PVSLREVV 255
>gi|7706501 WW domain binding protein 11 [Homo sapiens]
Length = 641
Score = 60.8 bits (146), Expect = 3e-09
Identities = 45/138 (32%), Positives = 56/138 (40%), Gaps = 6/138 (4%)
Query: 15 SPGGGAVAAALGAPPPPAGPGML-----PGPALRGPGPAGGVGGPGAAAFRPMGPAGPAA 69
S G ++ APP P + PGP GP PA + PG P GP A
Sbjct: 380 SDGTSTASSQQQAPPQSVPPSQIQAPPMPGPPPLGPPPAPPLRPPGPPTGLPPGPPPGAP 439
Query: 70 QYQRPGMSPGNRMPMAG-LQVGPPAGSPFGAAAPLRPGMPPTMMDPFRKRLLVPQAQPPM 128
+ RP PG R P+ L GPP G P G PG+PP L P A P +
Sbjct: 440 PFLRPPGMPGLRGPLPRLLPPGPPPGRPPGPPPGPPPGLPPGPPPRGPPPRLPPPAPPGI 499
Query: 129 PAQRRGLKRRKMADKVLP 146
P R G+ R + + P
Sbjct: 500 PPPRPGMMRPPLVPPLGP 517
Score = 53.9 bits (128), Expect = 4e-07
Identities = 47/129 (36%), Positives = 52/129 (40%), Gaps = 15/129 (11%)
Query: 12 PPLSPGGGAVAAALGAPPPPAGPGMLPGPALRGPGPAGGVGG---PGAAAF-RPMGPAG- 66
PP S + A PPP GP P P LR PGP G+ PGA F RP G G
Sbjct: 393 PPQSVPPSQIQAPPMPGPPPLGPP--PAPPLRPPGPPTGLPPGPPPGAPPFLRPPGMPGL 450
Query: 67 --PAAQYQRPGMSPGNRM-----PMAGLQVGPPA-GSPFGAAAPLRPGMPPTMMDPFRKR 118
P + PG PG P GL GPP G P P PG+PP R
Sbjct: 451 RGPLPRLLPPGPPPGRPPGPPPGPPPGLPPGPPPRGPPPRLPPPAPPGIPPPRPGMMRPP 510
Query: 119 LLVPQAQPP 127
L+ P P
Sbjct: 511 LVPPLGPAP 519
Score = 43.5 bits (101), Expect = 5e-04
Identities = 36/106 (33%), Positives = 42/106 (39%), Gaps = 22/106 (20%)
Query: 5 GAGGFPLPPLSPGGGAVAAALGAPPPPAG----------PGMLPGPALRGPGP------A 48
GA F PP PG L P PP G PG+ PGP RGP P
Sbjct: 437 GAPPFLRPPGMPGLRGPLPRLLPPGPPPGRPPGPPPGPPPGLPPGPPPRGPPPRLPPPAP 496
Query: 49 GGVGGPGAAAFRP--MGPAGPAAQYQRPGMSPGNRMPMAGLQVGPP 92
G+ P RP + P GPA PG+ P +P G+ PP
Sbjct: 497 PGIPPPRPGMMRPPLVPPLGPAP----PGLFPPAPLPNPGVLSAPP 538
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 54.3 bits (129), Expect = 3e-07
Identities = 51/139 (36%), Positives = 55/139 (39%), Gaps = 27/139 (19%)
Query: 15 SPGGGAVAAALGAPPPPAGPGMLPGPAL----RGPGPAGGVG-GPGAAAFRPMGPA---- 65
+P A A A G P PAGP GPA GPGP G G GPG +P GP
Sbjct: 138 APVPAAAAVAAGPEPAPAGPAKPAGPAALAARAGPGPGPGPGPGPGPGPGKPAGPGAAQT 197
Query: 66 --GPAA-----QYQRPGMSPGNRMPMAGLQVGPPAG-------SPF-GAAAPLRPGMPPT 110
G AA P +S N P A L + PA PF GAAAP P P
Sbjct: 198 LNGSAALLNSHHAAAPAVSLVNNGPAALLPLPKPAAPGTVIQTPPFVGAAAPPAPAAP-- 255
Query: 111 MMDPFRKRLLVPQAQPPMP 129
P P A PP P
Sbjct: 256 -SPPAAPAPAAPAAAPPPP 273
Score = 52.0 bits (123), Expect = 1e-06
Identities = 46/151 (30%), Positives = 54/151 (35%), Gaps = 26/151 (17%)
Query: 10 PLPPLSPGGGAVAAALGAPPP-----------PAG-----PGMLPGPALRGPGPAGGVGG 53
P PP +P A AAA PPP PAG P + P A + G AG
Sbjct: 255 PSPPAAPAPAAPAAAPPPPPPAPATLARPPGHPAGPPTAAPAVPPPAAAQNGGSAGAAPA 314
Query: 54 PGAAAFRPMGPA---GPAAQYQRPGMSPGNRMPMAGLQVGPPAGSPFGAAAPLRPG---- 106
P AA P G + GP A P P +Q PPA A+ P
Sbjct: 315 PAPAAGGPAGVSGQPGPGAAAAAPAPGVKAESPKRVVQAAPPAAQTLAASGPASTAASMV 374
Query: 107 MPPTMMDPFRKRLLVPQAQPPMPAQRRGLKR 137
+ PTM VP PP P GL +
Sbjct: 375 IGPTMQGALPSPAAVP---PPAPGTPTGLPK 402
Score = 45.4 bits (106), Expect = 1e-04
Identities = 47/137 (34%), Positives = 49/137 (35%), Gaps = 41/137 (29%)
Query: 1 MSGRGAGGFPLPPLSPGGGAVAAALGAPPPPAG---PG----MLPGP------------- 40
+SG AG P +P GA AA PPPAG PG PGP
Sbjct: 63 VSGSPAGAAGAGPAAPAEGAPGAA--PEPPPAGRARPGGGGPQRPGPPSPRRPLVPAGPA 120
Query: 41 ---ALRGPGPAGGVG-------------GPGAAAFRPMGPAGPAAQYQRPGMSPGNRMPM 84
A P P G G GP A P PAGPAA R G PG P
Sbjct: 121 PPAAKLRPPPEGSAGSCAPVPAAAAVAAGPEPAPAGPAKPAGPAALAARAGPGPG---PG 177
Query: 85 AGLQVGPPAGSPFGAAA 101
G GP G P G A
Sbjct: 178 PGPGPGPGPGKPAGPGA 194
Score = 39.7 bits (91), Expect = 0.007
Identities = 37/110 (33%), Positives = 43/110 (39%), Gaps = 11/110 (10%)
Query: 5 GAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGPALRGPGPAGGVG--GPGAAAFR-- 60
GA G + SP G A A A P PG P P G GG G PG + R
Sbjct: 56 GALGNHVVSGSPAGAAGAGP--AAPAEGAPGAAPEPPPAGRARPGGGGPQRPGPPSPRRP 113
Query: 61 --PMGPAGPAAQYQRPGMSPGNR---MPMAGLQVGPPAGSPFGAAAPLRP 105
P GPA PAA+ + P +P A P +P G A P P
Sbjct: 114 LVPAGPAPPAAKLRPPPEGSAGSCAPVPAAAAVAAGPEPAPAGPAKPAGP 163
Score = 39.3 bits (90), Expect = 0.009
Identities = 42/134 (31%), Positives = 45/134 (33%), Gaps = 20/134 (14%)
Query: 10 PLP-PLSPG---------GGAVAAALGAPPPPAGPGMLPGPALRGPGPAGGVGGPGAAAF 59
PLP P +PG G A A AP PPA P PA P P A
Sbjct: 227 PLPKPAAPGTVIQTPPFVGAAAPPAPAAPSPPAAPA----PAAPAAAPPPPPPAPATLAR 282
Query: 60 RPMGPAGP---AAQYQRPGMSPGNRMPMAGLQVGPPAGSPFGAAAPLRPGMPPTMMDPFR 116
P PAGP A P + A P AG P G + PG P
Sbjct: 283 PPGHPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAAGGPAGVSGQPGPGAAAAAPAPGV 342
Query: 117 KR---LLVPQAQPP 127
K V QA PP
Sbjct: 343 KAESPKRVVQAAPP 356
Score = 32.0 bits (71), Expect = 1.4
Identities = 35/92 (38%), Positives = 37/92 (40%), Gaps = 12/92 (13%)
Query: 22 AAALGAPPPPAGPGMLPGPALRGPGPAGGVGGPGAAAFRPMGPAGPAAQY----QRPGMS 77
AAA GA G G A GP A G PGAA P PAG A QRPG
Sbjct: 52 AAAAGALGNHVVSGSPAGAAGAGPA-APAEGAPGAAPEPP--PAGRARPGGGGPQRPG-P 107
Query: 78 PGNRMPMAGLQVGPPAGS----PFGAAAPLRP 105
P R P+ PPA P G+A P
Sbjct: 108 PSPRRPLVPAGPAPPAAKLRPPPEGSAGSCAP 139
>gi|190343021 Sec24-related protein D [Homo sapiens]
Length = 1032
Score = 53.9 bits (128), Expect = 4e-07
Identities = 45/130 (34%), Positives = 55/130 (42%), Gaps = 21/130 (16%)
Query: 5 GAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGPALRGPGPAGGVGGPGAA-----AF 59
G+G P P P G A +L PP P P +L + P P + GPGA+ +
Sbjct: 133 GSGMAP-PSQGPPGPLSATSLQTPPRPPQPSILQPGSQVLPPPPTTLNGPGASPLPLPMY 191
Query: 60 RP---MGPAGPAAQYQ---RPGMSPGNRMP---------MAGLQVGPPAGSPFGAAAPLR 104
RP GP P AQYQ PG + G P MAG Q+ P G P G A
Sbjct: 192 RPDGLSGPPPPNAQYQPPPLPGQTLGAGYPPQQANSGPQMAGAQLSYPGGFPGGPAQMAG 251
Query: 105 PGMPPTMMDP 114
P P +DP
Sbjct: 252 PPQPQKKLDP 261
Score = 39.7 bits (91), Expect = 0.007
Identities = 33/89 (37%), Positives = 35/89 (39%), Gaps = 18/89 (20%)
Query: 1 MSGRGAGGFPLPPLSPGGGAVAAALGAPPPPAG---PGMLPGPALRGPGPAGGVGGPGAA 57
++G GA PLP P G L PPPP P LPG L G G P
Sbjct: 178 LNGPGASPLPLPMYRPDG------LSGPPPPNAQYQPPPLPGQTL-------GAGYPPQQ 224
Query: 58 AFRPMGPAGPAAQYQRPGMSPGNRMPMAG 86
A GP AQ PG PG MAG
Sbjct: 225 A--NSGPQMAGAQLSYPGGFPGGPAQMAG 251
>gi|162329583 cleavage and polyadenylation specific factor 6, 68 kD
subunit [Homo sapiens]
Length = 551
Score = 53.5 bits (127), Expect = 5e-07
Identities = 45/121 (37%), Positives = 48/121 (39%), Gaps = 14/121 (11%)
Query: 3 GRGAGGFPLPPLSPGGGAVA--AALGAPPPPAGPGMLPG-PALRGPGPAGGVGGPGAAAF 59
GRG G FP PGG A G PPPP G P P L PGP G G P
Sbjct: 201 GRGRGRFP--GAVPGGDRFPGPAGPGGPPPPFPAGQTPPRPPLGPPGPPGPPGPPPPGQV 258
Query: 60 RPMGPAGPAAQYQRPGM------SPGNRMPMAGLQVGPPAGSPFGAAAPLRPGMPPTMMD 113
P AGP + RP P + P+ L GPP P G P PG PP
Sbjct: 259 LPPPLAGPPNRGDRPPPPVLFPGQPFGQPPLGPLPPGPPPPVP-GYGPP--PGPPPPQQG 315
Query: 114 P 114
P
Sbjct: 316 P 316
Score = 45.4 bits (106), Expect = 1e-04
Identities = 41/122 (33%), Positives = 45/122 (36%), Gaps = 27/122 (22%)
Query: 3 GRGAGGFPLPPLSPGGGAVAAALGAPPPPA---GPGMLPGPALRGPGPAGGVGGPGAAAF 59
G+ G PL PL PG PPPP GP P P +GP P PG
Sbjct: 281 GQPFGQPPLGPLPPG----------PPPPVPGYGPPPGPPPPQQGPPPP-----PGPFPP 325
Query: 60 RPMGPAGPAAQYQRPGMSPGNRMPMAGLQVGPPAGSPFGAAAPLRPGMP------PTMMD 113
RP GP GP P PG P G P +P P GMP P D
Sbjct: 326 RPPGPLGPPLTLAPPPHLPG---PPPGAPPPAPHVNPAFFPPPTNSGMPTSDSRGPPPTD 382
Query: 114 PF 115
P+
Sbjct: 383 PY 384
Score = 39.7 bits (91), Expect = 0.007
Identities = 49/156 (31%), Positives = 52/156 (33%), Gaps = 46/156 (29%)
Query: 1 MSGRGAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGPALRG---PGPAGGVGGPG-- 55
MSG G G P GG+ AA P G G PG G PGPAG G P
Sbjct: 180 MSGEGKAG-------PPGGSSRAAF--PQGGRGRGRFPGAVPGGDRFPGPAGPGGPPPPF 230
Query: 56 -AAAFRPMGPAGPAAQYQRPGMSPGNRMPMAGLQVGPP-----------------AGSPF 97
A P P GP PG P G + PP G PF
Sbjct: 231 PAGQTPPRPPLGPPGPPGPPGPPP------PGQVLPPPLAGPPNRGDRPPPPVLFPGQPF 284
Query: 98 G--AAAPLRPGMPPTMMDPFRKRLLVPQAQPPMPAQ 131
G PL PG PP + P PP P Q
Sbjct: 285 GQPPLGPLPPGPPPPVPG------YGPPPGPPPPQQ 314
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 52.4 bits (124), Expect = 1e-06
Identities = 41/108 (37%), Positives = 45/108 (41%), Gaps = 12/108 (11%)
Query: 6 AGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGPALRGPGPAGGVGGPG----AAAFRP 61
AGGF GGA + P P GP PGPA PGP G G PG P
Sbjct: 184 AGGFD----EKAGGAQLGVMQGPMGPMGPRGPPGPA-GAPGPQGFQGNPGEPGEPGVSGP 238
Query: 62 MGPAGPAAQYQRPGMSPGNRMPMAGLQVGPPAGSPFGAAA-PLRPGMP 108
MGP GP +PG P + GPP P GA P PG+P
Sbjct: 239 MGPRGPPGPPGKPGDDGEAGKPGKAGERGPP--GPQGARGFPGTPGLP 284
Score = 47.0 bits (110), Expect = 4e-05
Identities = 40/114 (35%), Positives = 43/114 (37%), Gaps = 16/114 (14%)
Query: 5 GAGGFPLPPLSPGGGAVAAALGAPPP--PAGPGMLPGPALRGPGPAGGVGGPGAAAFR-- 60
G G P S G +A A G P P P GP GP GP G G PG A F+
Sbjct: 411 GTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPL----GPKGQTGEPGIAGFKGE 466
Query: 61 --PMGPAGPAAQYQRPGMSPGNRMPMAGLQVGP----PAGSPFGAAAPLRPGMP 108
P G GPA PG P G + P P G P AP G P
Sbjct: 467 QGPKGEPGPAGPQGAPG--PAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFP 518
Score = 46.6 bits (109), Expect = 6e-05
Identities = 41/117 (35%), Positives = 48/117 (41%), Gaps = 8/117 (6%)
Query: 5 GAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGPALRGP-GPAGGVGGPG----AAAF 59
G+ G P PP PG GA PG P L+GP GP G G PG + A
Sbjct: 909 GSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAE 968
Query: 60 RPMGPAGPAAQYQRPGMSPGNRMPMAGLQVGPPAGSPFGAAAPLRPG--MPPTMMDP 114
P GP G A Q G+ PG R + P+G P AP G PP + P
Sbjct: 969 GPPGPQGLAGQRGIVGL-PGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGP 1024
Score = 45.4 bits (106), Expect = 1e-04
Identities = 45/148 (30%), Positives = 52/148 (35%), Gaps = 35/148 (23%)
Query: 13 PLSPGGGAVAAALGAPPPPAG-------PGM--------------LPGPALRGPGPAGGV 51
P+ P G A A + P P G PG LPGP PGP+G
Sbjct: 1096 PMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQGLPGP----PGPSGDQ 1151
Query: 52 GGPGAAAFRPMGPAGPAAQYQRPGMSPGNRMPMAGLQVGP--------PAGSPFGAAAPL 103
G G A P GP GP G N +P GP PAG P P
Sbjct: 1152 GASGPAG--PSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPPGNPGPPG 1209
Query: 104 RPGMPPTMMDPFRKRLLVPQAQPPMPAQ 131
PG P +D L P+ + P P Q
Sbjct: 1210 PPGPPGPGIDMSAFAGLGPREKGPDPLQ 1237
Score = 44.7 bits (104), Expect = 2e-04
Identities = 46/154 (29%), Positives = 60/154 (38%), Gaps = 30/154 (19%)
Query: 1 MSGRGAGGFPLPPLSPGGGAVAAALGAPPPPAG----PGMLPGPALRG----PGPAGGVG 52
++GR P + P G PP P G PG++ P +G PG AG G
Sbjct: 562 LTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKG 621
Query: 53 GPGAAAFR-------------PMGPAGPAAQYQRPGMSPGNRMPMAGLQVGP-PAGSPFG 98
PGA R P GPAGPA + G +PG +G Q P P G P
Sbjct: 622 LPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQG-APG----PSGFQGLPGPPGPPGE 676
Query: 99 AAAPLRPGMPPTMMDPFRKRLLVPQAQPPMPAQR 132
P G+P P L+ P+ + P +R
Sbjct: 677 GGKPGDQGVPGEAGAP---GLVGPRGERGFPGER 707
Score = 43.1 bits (100), Expect = 6e-04
Identities = 41/127 (32%), Positives = 48/127 (37%), Gaps = 24/127 (18%)
Query: 5 GAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGPALRG----PGPAGGVGGPGAAAFR 60
GA GFP P PG LG PG+ +G PGPAG G PG A
Sbjct: 429 GAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEE 488
Query: 61 ----------PMGPAGPAAQYQRPGMS--PGNRMPMAGLQVGPPAGSPFGAAAPL----- 103
+GP GP + PG PG + +AG + P P G A P
Sbjct: 489 GKRGARGEPGGVGPIGPPGERGAPGNRGFPG-QDGLAGPKGAPGERGPSGLAGPKGANGD 547
Query: 104 --RPGMP 108
RPG P
Sbjct: 548 PGRPGEP 554
Score = 42.7 bits (99), Expect = 8e-04
Identities = 50/155 (32%), Positives = 58/155 (37%), Gaps = 30/155 (19%)
Query: 3 GRGAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGPALRG----PGPAGGVGGPGA-- 56
GRG G PP G +G P P G P RG PGPAG G PGA
Sbjct: 784 GRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADG 843
Query: 57 --AAFRPMGPAGP-----AAQYQRPGMSPGNRMPMA--------GLQVGPPAGSPFGAAA 101
A G AG A Q P +PG + P G Q GPP + F AA
Sbjct: 844 QPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQ-GPPGATGFPGAA 902
Query: 102 PLRPGMPPTMMDPFRKRLLVPQAQPPMPAQRRGLK 136
R G P + +P PP P+ + G K
Sbjct: 903 G-RVGPPGSNGNP-------GPPGPPGPSGKDGPK 929
Score = 41.6 bits (96), Expect = 0.002
Identities = 31/80 (38%), Positives = 37/80 (46%), Gaps = 11/80 (13%)
Query: 4 RGAGGFPLPPLSPGGGAVAAALGAP-----PPPAGPGMLPGPALR-GPGPAGGVGGPGAA 57
+GA G PP + G A +G P P P GP PGP+ + GP A G GP
Sbjct: 884 KGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGP---PGPSGKDGPKGARGDSGPPGR 940
Query: 58 AFRP--MGPAGPAAQYQRPG 75
A P GPAGP + PG
Sbjct: 941 AGEPGLQGPAGPPGEKGEPG 960
Score = 41.2 bits (95), Expect = 0.002
Identities = 51/142 (35%), Positives = 54/142 (38%), Gaps = 35/142 (24%)
Query: 19 GAVAAALGAPPPPAGPGMLPGPALRGPGPAGGVGGPG-AAAFRPMGPAGPAAQYQRPGM- 76
GAV A GAP PP PGPA GP G G G A A PMGP+GPA G
Sbjct: 1062 GAVGAP-GAPGPPGS----PGPA----GPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQ 1112
Query: 77 ----------SPGNR-----MPMAGLQ--VGPPAGS----PFGAAAPLRPGMPPTMMDPF 115
PG R GLQ GPP S G A P P PP + P
Sbjct: 1113 GPRGDKGEAGEPGERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPGPVGPS 1172
Query: 116 RK---RLLVPQAQPPMPAQRRG 134
K + PP P R G
Sbjct: 1173 GKDGANGIPGPIGPPGPRGRSG 1194
Score = 40.4 bits (93), Expect = 0.004
Identities = 38/113 (33%), Positives = 42/113 (37%), Gaps = 13/113 (11%)
Query: 4 RGAGGFPLPPLSPGGGAVAAALG-----APPPPAGPGMLPGPALR--GPGPAGGVGGPGA 56
+GA G P P PG G P GP PG R PGP G G PG
Sbjct: 542 KGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGV 601
Query: 57 AAFRPMGPAGPAAQYQRPGMSPGNRMPMA-GLQVGPPAGSPFGAAAPLRPGMP 108
MG GP PG + +P A GL+ P GAA P P P
Sbjct: 602 -----MGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGP 649
Score = 39.7 bits (91), Expect = 0.007
Identities = 40/105 (38%), Positives = 42/105 (40%), Gaps = 20/105 (19%)
Query: 16 PGGGAVAAALGAPPPPAGPGMLPGPALRGPGPAGGVGGPGAA----AFRPMGPAGPAAQY 71
P G A A P PAGP GPA GPG G G G A A P G GP +
Sbjct: 337 PAGAAGARGNDGQPGPAGPPGPVGPA-GGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEP 395
Query: 72 QRPGMSPGNRMPMAGLQVGP----------PAGSPFGAAAPLRPG 106
PG SPG AG P AG+P A AP PG
Sbjct: 396 GTPG-SPG----PAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPG 435
Score = 39.3 bits (90), Expect = 0.009
Identities = 38/105 (36%), Positives = 43/105 (40%), Gaps = 14/105 (13%)
Query: 4 RGAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGPALRGPGPAGGVGGPGAAAFRPMG 63
RGA G P G GAP G G L GP + PGPAG G G +G
Sbjct: 755 RGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRG-LTGP-IGPPGPAGANGEKG-----EVG 807
Query: 64 PAGPAAQYQRPGMSPGNRMPMAGLQVGPPAGSPFGAAAPLRPGMP 108
P GPA G +PG R + GPP + F A P G P
Sbjct: 808 PPGPAGSAGARG-APGERG-----ETGPPGPAGF-AGPPGADGQP 845
Score = 38.9 bits (89), Expect = 0.012
Identities = 30/93 (32%), Positives = 34/93 (36%), Gaps = 16/93 (17%)
Query: 5 GAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGPALRG-PGPAGGVGGPGAAAFRPM- 62
G G P PP PG G G P PG++ RG PG G G G R +
Sbjct: 663 GFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLP 722
Query: 63 ------------GPAGPAAQYQRPGMS--PGNR 81
GPAGP PG+ PG R
Sbjct: 723 GTPGTDGPKGASGPAGPPGAQGPPGLQGMPGER 755
Score = 37.7 bits (86), Expect = 0.026
Identities = 28/75 (37%), Positives = 31/75 (41%), Gaps = 11/75 (14%)
Query: 5 GAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGPALRGPGPAGGVGGPGAAAFRPMGP 64
G GF P PG V+ +G PP PG PG G G PG A R GP
Sbjct: 219 GPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGK--------PGDDGEAGKPGKAGER--GP 268
Query: 65 AGPAAQYQRPGMSPG 79
GP PG +PG
Sbjct: 269 PGPQGARGFPG-TPG 282
Score = 37.7 bits (86), Expect = 0.026
Identities = 40/102 (39%), Positives = 41/102 (40%), Gaps = 15/102 (14%)
Query: 4 RGAGGFPLPPLSPGGGAVAAALG--APPPPAGPGMLPGPALRGP-GPAGGVGGPGAAAFR 60
RG G P P PG A G PP P GP P L GP G G G PGA
Sbjct: 992 RGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGP-----PGLTGPAGEPGREGSPGADG-- 1044
Query: 61 PMGPAGPAAQYQRPGMSPGNRMPMAGLQVGPPAGSPFGAAAP 102
P G G A G + P A GPP GSP G A P
Sbjct: 1045 PPGRDGAAGVKGDRGETGAVGAPGA---PGPP-GSP-GPAGP 1081
Score = 37.0 bits (84), Expect = 0.045
Identities = 39/121 (32%), Positives = 43/121 (35%), Gaps = 16/121 (13%)
Query: 4 RGAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGPALRG-------PGPAGGVGGPGA 56
+G G P +PG GA P G G + P RG PG G G GA
Sbjct: 470 KGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGA 529
Query: 57 AAFR-PMGPAGPAAQYQRPGMSPGNRMPMA-GLQVGPPAGSPFGAAAPL-------RPGM 107
R P G AGP PG +P A GL P P G P RPG
Sbjct: 530 PGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGP 589
Query: 108 P 108
P
Sbjct: 590 P 590
Score = 37.0 bits (84), Expect = 0.045
Identities = 43/128 (33%), Positives = 48/128 (37%), Gaps = 24/128 (18%)
Query: 4 RGAGGFPLPPLSPGGGAVAAALGAPPPPAGPGM-----LPG-------PALRGP-GPAGG 50
+G G P PG + A G P P G LPG P L GP G G
Sbjct: 947 QGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGK 1006
Query: 51 VGGPGAAAFR----PMGP---AGPAAQYQRPGMSPGNRMPM---AGLQVGPPAGSPFGAA 100
G PGA+ R P+GP GPA + R G SPG P V G
Sbjct: 1007 QGAPGASGDRGPPGPVGPPGLTGPAGEPGREG-SPGADGPPGRDGAAGVKGDRGETGAVG 1065
Query: 101 APLRPGMP 108
AP PG P
Sbjct: 1066 APGAPGPP 1073
Score = 36.6 bits (83), Expect = 0.059
Identities = 30/78 (38%), Positives = 34/78 (43%), Gaps = 10/78 (12%)
Query: 5 GAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGPALRGPGPAGGVGGPGAAAFRPMGP 64
GA G P P PG + G PP PG PGP PGP G G +AF +GP
Sbjct: 1176 GANGIPGPIGPPGPRGRSGETGPAGPPGNPGP-PGP----PGPPG--PGIDMSAFAGLGP 1228
Query: 65 --AGP-AAQYQRPGMSPG 79
GP QY R + G
Sbjct: 1229 REKGPDPLQYMRADQAAG 1246
Score = 35.0 bits (79), Expect = 0.17
Identities = 41/136 (30%), Positives = 47/136 (34%), Gaps = 49/136 (36%)
Query: 4 RGAGGFPLPPLSPGGGAVAAALGAPPPP--------AGPGMLPG----PALRG-PGPAG- 49
RG GFP SPG + G P P +GP PG P L+G PG G
Sbjct: 698 RGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGA 757
Query: 50 -GVGGP--------------------GAAAFRPMGPAGPAAQYQRPGMSPGNRMPMAGLQ 88
G+ GP G P+GP GPA G +
Sbjct: 758 AGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKG------------E 805
Query: 89 VGP--PAGSPFGAAAP 102
VGP PAGS AP
Sbjct: 806 VGPPGPAGSAGARGAP 821
Score = 34.7 bits (78), Expect = 0.22
Identities = 37/115 (32%), Positives = 39/115 (33%), Gaps = 20/115 (17%)
Query: 4 RGAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGPALRGPGPAGGV-GGPGAAAFRPM 62
RG G P P PG A G P P G RGP A G G PG
Sbjct: 344 RGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTP----- 398
Query: 63 GPAGPAAQYQRPGMS--PGNRMPMAGLQV----------GPPAGSPFGAAAPLRP 105
G GPA PG PG + + GPP P GA PL P
Sbjct: 399 GSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPP--GPQGATGPLGP 451
Score = 33.9 bits (76), Expect = 0.38
Identities = 38/112 (33%), Positives = 47/112 (41%), Gaps = 10/112 (8%)
Query: 4 RGAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGPALRGPGPAGGVGGPGAAAFR--P 61
+G G P P PG G P PP PG G A + PG AG G PG R P
Sbjct: 221 QGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGD-DGEAGK-PGKAGERGPPGPQGARGFP 278
Query: 62 MGPAGPAAQYQR--PGMSPGNRMPMAGLQVGPPAGSP--FGAAAPLRP-GMP 108
P P + R PG+ G + V +GSP G+ P+ P G+P
Sbjct: 279 GTPGLPGVKGHRGYPGLD-GAKGEAGAPGVKGESGSPGENGSPGPMGPRGLP 329
Score = 33.5 bits (75), Expect = 0.50
Identities = 35/111 (31%), Positives = 41/111 (36%), Gaps = 13/111 (11%)
Query: 26 GAPPPPAGPGMLPGPALRGPGPAGGVGGPGAAAFRPMGPAGPAAQYQRPGMSPGNRMPMA 85
G P P PG PGP PGP G G G A + G A + G+ G PM
Sbjct: 153 GEPGTPGNPGP-PGP----PGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMG 207
Query: 86 GLQVGPPAGSPFGAAAPLRPGMP--PTMMDPFRKRLLVPQAQPPMPAQRRG 134
PAG+P PG P P + P R PP P + G
Sbjct: 208 PRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPR------GPPGPPGKPG 252
Score = 32.7 bits (73), Expect = 0.85
Identities = 39/112 (34%), Positives = 48/112 (42%), Gaps = 20/112 (17%)
Query: 4 RGAGGFP--LPPLSPGGGAVAAA-LGAPPPPAGPGMLPGPALRGP----GPAGGVGGPGA 56
RGA G P + P+ P G A G P G P RGP GP G G PG
Sbjct: 491 RGARGEPGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPG- 549
Query: 57 AAFRPMGPAGPAAQYQRPGMS--PGNRMPMAGLQVGPPAGSPFGAAAPLRPG 106
RP P P A+ G++ PG+ P +VG P+G+P P PG
Sbjct: 550 ---RPGEPGLPGAR----GLTGRPGDAGPQG--KVG-PSGAPGEDGRPGPPG 591
Score = 32.7 bits (73), Expect = 0.85
Identities = 28/95 (29%), Positives = 31/95 (32%), Gaps = 1/95 (1%)
Query: 15 SPGGGAVAAALGAPPPPAGPGMLPGPALRGPGPAGGVGGPGAAAFRPMGPAGPAAQ-YQR 73
+PG G P PP G + G A G+ GP P P AQ Q
Sbjct: 658 APGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQG 717
Query: 74 PGMSPGNRMPMAGLQVGPPAGSPFGAAAPLRPGMP 108
P PG PAG P P GMP
Sbjct: 718 PRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMP 752
Score = 29.3 bits (64), Expect = 9.4
Identities = 35/111 (31%), Positives = 40/111 (36%), Gaps = 10/111 (9%)
Query: 4 RGAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGPALRGPGPAG--GVGGPGAAAFRP 61
+G G P PG A G PP PAGP G PGP+G G+ GP P
Sbjct: 620 KGLPGAPGLRGLPGKDGETGAAG-PPGPAGPAGERGEQ-GAPGPSGFQGLPGPPG----P 673
Query: 62 MGPAGPAAQYQRPGM--SPGNRMPMAGLQVGPPAGSPFGAAAPLRPGMPPT 110
G G PG +PG P GSP G+P T
Sbjct: 674 PGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGT 724
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 52.4 bits (124), Expect = 1e-06
Identities = 41/108 (37%), Positives = 45/108 (41%), Gaps = 12/108 (11%)
Query: 6 AGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGPALRGPGPAGGVGGPG----AAAFRP 61
AGGF GGA + P P GP PGPA PGP G G PG P
Sbjct: 115 AGGFD----EKAGGAQLGVMQGPMGPMGPRGPPGPA-GAPGPQGFQGNPGEPGEPGVSGP 169
Query: 62 MGPAGPAAQYQRPGMSPGNRMPMAGLQVGPPAGSPFGAAA-PLRPGMP 108
MGP GP +PG P + GPP P GA P PG+P
Sbjct: 170 MGPRGPPGPPGKPGDDGEAGKPGKAGERGPP--GPQGARGFPGTPGLP 215
Score = 47.0 bits (110), Expect = 4e-05
Identities = 40/114 (35%), Positives = 43/114 (37%), Gaps = 16/114 (14%)
Query: 5 GAGGFPLPPLSPGGGAVAAALGAPPP--PAGPGMLPGPALRGPGPAGGVGGPGAAAFR-- 60
G G P S G +A A G P P P GP GP GP G G PG A F+
Sbjct: 342 GTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPL----GPKGQTGEPGIAGFKGE 397
Query: 61 --PMGPAGPAAQYQRPGMSPGNRMPMAGLQVGP----PAGSPFGAAAPLRPGMP 108
P G GPA PG P G + P P G P AP G P
Sbjct: 398 QGPKGEPGPAGPQGAPG--PAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFP 449
Score = 46.6 bits (109), Expect = 6e-05
Identities = 41/117 (35%), Positives = 48/117 (41%), Gaps = 8/117 (6%)
Query: 5 GAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGPALRGP-GPAGGVGGPG----AAAF 59
G+ G P PP PG GA PG P L+GP GP G G PG + A
Sbjct: 840 GSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAE 899
Query: 60 RPMGPAGPAAQYQRPGMSPGNRMPMAGLQVGPPAGSPFGAAAPLRPG--MPPTMMDP 114
P GP G A Q G+ PG R + P+G P AP G PP + P
Sbjct: 900 GPPGPQGLAGQRGIVGL-PGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGP 955
Score = 45.4 bits (106), Expect = 1e-04
Identities = 45/148 (30%), Positives = 52/148 (35%), Gaps = 35/148 (23%)
Query: 13 PLSPGGGAVAAALGAPPPPAG-------PGM--------------LPGPALRGPGPAGGV 51
P+ P G A A + P P G PG LPGP PGP+G
Sbjct: 1027 PMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQGLPGP----PGPSGDQ 1082
Query: 52 GGPGAAAFRPMGPAGPAAQYQRPGMSPGNRMPMAGLQVGP--------PAGSPFGAAAPL 103
G G A P GP GP G N +P GP PAG P P
Sbjct: 1083 GASGPAG--PSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPPGNPGPPG 1140
Query: 104 RPGMPPTMMDPFRKRLLVPQAQPPMPAQ 131
PG P +D L P+ + P P Q
Sbjct: 1141 PPGPPGPGIDMSAFAGLGPREKGPDPLQ 1168
Score = 44.7 bits (104), Expect = 2e-04
Identities = 46/154 (29%), Positives = 60/154 (38%), Gaps = 30/154 (19%)
Query: 1 MSGRGAGGFPLPPLSPGGGAVAAALGAPPPPAG----PGMLPGPALRG----PGPAGGVG 52
++GR P + P G PP P G PG++ P +G PG AG G
Sbjct: 493 LTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKG 552
Query: 53 GPGAAAFR-------------PMGPAGPAAQYQRPGMSPGNRMPMAGLQVGP-PAGSPFG 98
PGA R P GPAGPA + G +PG +G Q P P G P
Sbjct: 553 LPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQG-APG----PSGFQGLPGPPGPPGE 607
Query: 99 AAAPLRPGMPPTMMDPFRKRLLVPQAQPPMPAQR 132
P G+P P L+ P+ + P +R
Sbjct: 608 GGKPGDQGVPGEAGAP---GLVGPRGERGFPGER 638
Score = 43.1 bits (100), Expect = 6e-04
Identities = 41/127 (32%), Positives = 48/127 (37%), Gaps = 24/127 (18%)
Query: 5 GAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGPALRG----PGPAGGVGGPGAAAFR 60
GA GFP P PG LG PG+ +G PGPAG G PG A
Sbjct: 360 GAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEE 419
Query: 61 ----------PMGPAGPAAQYQRPGMS--PGNRMPMAGLQVGPPAGSPFGAAAPL----- 103
+GP GP + PG PG + +AG + P P G A P
Sbjct: 420 GKRGARGEPGGVGPIGPPGERGAPGNRGFPG-QDGLAGPKGAPGERGPSGLAGPKGANGD 478
Query: 104 --RPGMP 108
RPG P
Sbjct: 479 PGRPGEP 485
Score = 42.7 bits (99), Expect = 8e-04
Identities = 50/155 (32%), Positives = 58/155 (37%), Gaps = 30/155 (19%)
Query: 3 GRGAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGPALRG----PGPAGGVGGPGA-- 56
GRG G PP G +G P P G P RG PGPAG G PGA
Sbjct: 715 GRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADG 774
Query: 57 --AAFRPMGPAGP-----AAQYQRPGMSPGNRMPMA--------GLQVGPPAGSPFGAAA 101
A G AG A Q P +PG + P G Q GPP + F AA
Sbjct: 775 QPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQ-GPPGATGFPGAA 833
Query: 102 PLRPGMPPTMMDPFRKRLLVPQAQPPMPAQRRGLK 136
R G P + +P PP P+ + G K
Sbjct: 834 G-RVGPPGSNGNP-------GPPGPPGPSGKDGPK 860
Score = 41.6 bits (96), Expect = 0.002
Identities = 31/80 (38%), Positives = 37/80 (46%), Gaps = 11/80 (13%)
Query: 4 RGAGGFPLPPLSPGGGAVAAALGAP-----PPPAGPGMLPGPALR-GPGPAGGVGGPGAA 57
+GA G PP + G A +G P P P GP PGP+ + GP A G GP
Sbjct: 815 KGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGP---PGPSGKDGPKGARGDSGPPGR 871
Query: 58 AFRP--MGPAGPAAQYQRPG 75
A P GPAGP + PG
Sbjct: 872 AGEPGLQGPAGPPGEKGEPG 891
Score = 41.2 bits (95), Expect = 0.002
Identities = 51/142 (35%), Positives = 54/142 (38%), Gaps = 35/142 (24%)
Query: 19 GAVAAALGAPPPPAGPGMLPGPALRGPGPAGGVGGPG-AAAFRPMGPAGPAAQYQRPGM- 76
GAV A GAP PP PGPA GP G G G A A PMGP+GPA G
Sbjct: 993 GAVGAP-GAPGPPGS----PGPA----GPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQ 1043
Query: 77 ----------SPGNR-----MPMAGLQ--VGPPAGS----PFGAAAPLRPGMPPTMMDPF 115
PG R GLQ GPP S G A P P PP + P
Sbjct: 1044 GPRGDKGEAGEPGERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPGPVGPS 1103
Query: 116 RK---RLLVPQAQPPMPAQRRG 134
K + PP P R G
Sbjct: 1104 GKDGANGIPGPIGPPGPRGRSG 1125
Score = 40.4 bits (93), Expect = 0.004
Identities = 38/113 (33%), Positives = 42/113 (37%), Gaps = 13/113 (11%)
Query: 4 RGAGGFPLPPLSPGGGAVAAALG-----APPPPAGPGMLPGPALR--GPGPAGGVGGPGA 56
+GA G P P PG G P GP PG R PGP G G PG
Sbjct: 473 KGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGV 532
Query: 57 AAFRPMGPAGPAAQYQRPGMSPGNRMPMA-GLQVGPPAGSPFGAAAPLRPGMP 108
MG GP PG + +P A GL+ P GAA P P P
Sbjct: 533 -----MGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGP 580
Score = 39.7 bits (91), Expect = 0.007
Identities = 40/105 (38%), Positives = 42/105 (40%), Gaps = 20/105 (19%)
Query: 16 PGGGAVAAALGAPPPPAGPGMLPGPALRGPGPAGGVGGPGAA----AFRPMGPAGPAAQY 71
P G A A P PAGP GPA GPG G G G A A P G GP +
Sbjct: 268 PAGAAGARGNDGQPGPAGPPGPVGPA-GGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEP 326
Query: 72 QRPGMSPGNRMPMAGLQVGP----------PAGSPFGAAAPLRPG 106
PG SPG AG P AG+P A AP PG
Sbjct: 327 GTPG-SPG----PAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPG 366
Score = 39.3 bits (90), Expect = 0.009
Identities = 38/105 (36%), Positives = 43/105 (40%), Gaps = 14/105 (13%)
Query: 4 RGAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGPALRGPGPAGGVGGPGAAAFRPMG 63
RGA G P G GAP G G L GP + PGPAG G G +G
Sbjct: 686 RGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRG-LTGP-IGPPGPAGANGEKG-----EVG 738
Query: 64 PAGPAAQYQRPGMSPGNRMPMAGLQVGPPAGSPFGAAAPLRPGMP 108
P GPA G +PG R + GPP + F A P G P
Sbjct: 739 PPGPAGSAGARG-APGERG-----ETGPPGPAGF-AGPPGADGQP 776
Score = 38.9 bits (89), Expect = 0.012
Identities = 30/93 (32%), Positives = 34/93 (36%), Gaps = 16/93 (17%)
Query: 5 GAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGPALRG-PGPAGGVGGPGAAAFRPM- 62
G G P PP PG G G P PG++ RG PG G G G R +
Sbjct: 594 GFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLP 653
Query: 63 ------------GPAGPAAQYQRPGMS--PGNR 81
GPAGP PG+ PG R
Sbjct: 654 GTPGTDGPKGASGPAGPPGAQGPPGLQGMPGER 686
Score = 37.7 bits (86), Expect = 0.026
Identities = 28/75 (37%), Positives = 31/75 (41%), Gaps = 11/75 (14%)
Query: 5 GAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGPALRGPGPAGGVGGPGAAAFRPMGP 64
G GF P PG V+ +G PP PG PG G G PG A R GP
Sbjct: 150 GPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGK--------PGDDGEAGKPGKAGER--GP 199
Query: 65 AGPAAQYQRPGMSPG 79
GP PG +PG
Sbjct: 200 PGPQGARGFPG-TPG 213
Score = 37.7 bits (86), Expect = 0.026
Identities = 40/102 (39%), Positives = 41/102 (40%), Gaps = 15/102 (14%)
Query: 4 RGAGGFPLPPLSPGGGAVAAALG--APPPPAGPGMLPGPALRGP-GPAGGVGGPGAAAFR 60
RG G P P PG A G PP P GP P L GP G G G PGA
Sbjct: 923 RGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGP-----PGLTGPAGEPGREGSPGADG-- 975
Query: 61 PMGPAGPAAQYQRPGMSPGNRMPMAGLQVGPPAGSPFGAAAP 102
P G G A G + P A GPP GSP G A P
Sbjct: 976 PPGRDGAAGVKGDRGETGAVGAPGA---PGPP-GSP-GPAGP 1012
Score = 37.0 bits (84), Expect = 0.045
Identities = 39/121 (32%), Positives = 43/121 (35%), Gaps = 16/121 (13%)
Query: 4 RGAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGPALRG-------PGPAGGVGGPGA 56
+G G P +PG GA P G G + P RG PG G G GA
Sbjct: 401 KGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGA 460
Query: 57 AAFR-PMGPAGPAAQYQRPGMSPGNRMPMA-GLQVGPPAGSPFGAAAPL-------RPGM 107
R P G AGP PG +P A GL P P G P RPG
Sbjct: 461 PGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGP 520
Query: 108 P 108
P
Sbjct: 521 P 521
Score = 37.0 bits (84), Expect = 0.045
Identities = 43/128 (33%), Positives = 48/128 (37%), Gaps = 24/128 (18%)
Query: 4 RGAGGFPLPPLSPGGGAVAAALGAPPPPAGPGM-----LPG-------PALRGP-GPAGG 50
+G G P PG + A G P P G LPG P L GP G G
Sbjct: 878 QGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGK 937
Query: 51 VGGPGAAAFR----PMGP---AGPAAQYQRPGMSPGNRMPM---AGLQVGPPAGSPFGAA 100
G PGA+ R P+GP GPA + R G SPG P V G
Sbjct: 938 QGAPGASGDRGPPGPVGPPGLTGPAGEPGREG-SPGADGPPGRDGAAGVKGDRGETGAVG 996
Query: 101 APLRPGMP 108
AP PG P
Sbjct: 997 APGAPGPP 1004
Score = 36.6 bits (83), Expect = 0.059
Identities = 30/78 (38%), Positives = 34/78 (43%), Gaps = 10/78 (12%)
Query: 5 GAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGPALRGPGPAGGVGGPGAAAFRPMGP 64
GA G P P PG + G PP PG PGP PGP G G +AF +GP
Sbjct: 1107 GANGIPGPIGPPGPRGRSGETGPAGPPGNPGP-PGP----PGPPG--PGIDMSAFAGLGP 1159
Query: 65 --AGP-AAQYQRPGMSPG 79
GP QY R + G
Sbjct: 1160 REKGPDPLQYMRADQAAG 1177
Score = 35.0 bits (79), Expect = 0.17
Identities = 41/136 (30%), Positives = 47/136 (34%), Gaps = 49/136 (36%)
Query: 4 RGAGGFPLPPLSPGGGAVAAALGAPPPP--------AGPGMLPG----PALRG-PGPAG- 49
RG GFP SPG + G P P +GP PG P L+G PG G
Sbjct: 629 RGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGA 688
Query: 50 -GVGGP--------------------GAAAFRPMGPAGPAAQYQRPGMSPGNRMPMAGLQ 88
G+ GP G P+GP GPA G +
Sbjct: 689 AGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKG------------E 736
Query: 89 VGP--PAGSPFGAAAP 102
VGP PAGS AP
Sbjct: 737 VGPPGPAGSAGARGAP 752
Score = 34.7 bits (78), Expect = 0.22
Identities = 37/115 (32%), Positives = 39/115 (33%), Gaps = 20/115 (17%)
Query: 4 RGAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGPALRGPGPAGGV-GGPGAAAFRPM 62
RG G P P PG A G P P G RGP A G G PG
Sbjct: 275 RGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTP----- 329
Query: 63 GPAGPAAQYQRPGMS--PGNRMPMAGLQV----------GPPAGSPFGAAAPLRP 105
G GPA PG PG + + GPP P GA PL P
Sbjct: 330 GSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPP--GPQGATGPLGP 382
Score = 33.9 bits (76), Expect = 0.38
Identities = 38/112 (33%), Positives = 47/112 (41%), Gaps = 10/112 (8%)
Query: 4 RGAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGPALRGPGPAGGVGGPGAAAFR--P 61
+G G P P PG G P PP PG G A + PG AG G PG R P
Sbjct: 152 QGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGD-DGEAGK-PGKAGERGPPGPQGARGFP 209
Query: 62 MGPAGPAAQYQR--PGMSPGNRMPMAGLQVGPPAGSP--FGAAAPLRP-GMP 108
P P + R PG+ G + V +GSP G+ P+ P G+P
Sbjct: 210 GTPGLPGVKGHRGYPGLD-GAKGEAGAPGVKGESGSPGENGSPGPMGPRGLP 260
Score = 33.5 bits (75), Expect = 0.50
Identities = 35/111 (31%), Positives = 41/111 (36%), Gaps = 13/111 (11%)
Query: 26 GAPPPPAGPGMLPGPALRGPGPAGGVGGPGAAAFRPMGPAGPAAQYQRPGMSPGNRMPMA 85
G P P PG PGP PGP G G G A + G A + G+ G PM
Sbjct: 84 GEPGTPGNPGP-PGP----PGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMG 138
Query: 86 GLQVGPPAGSPFGAAAPLRPGMP--PTMMDPFRKRLLVPQAQPPMPAQRRG 134
PAG+P PG P P + P R PP P + G
Sbjct: 139 PRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPR------GPPGPPGKPG 183
Score = 32.7 bits (73), Expect = 0.85
Identities = 39/112 (34%), Positives = 48/112 (42%), Gaps = 20/112 (17%)
Query: 4 RGAGGFP--LPPLSPGGGAVAAA-LGAPPPPAGPGMLPGPALRGP----GPAGGVGGPGA 56
RGA G P + P+ P G A G P G P RGP GP G G PG
Sbjct: 422 RGARGEPGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPG- 480
Query: 57 AAFRPMGPAGPAAQYQRPGMS--PGNRMPMAGLQVGPPAGSPFGAAAPLRPG 106
RP P P A+ G++ PG+ P +VG P+G+P P PG
Sbjct: 481 ---RPGEPGLPGAR----GLTGRPGDAGPQG--KVG-PSGAPGEDGRPGPPG 522
Score = 32.7 bits (73), Expect = 0.85
Identities = 28/95 (29%), Positives = 31/95 (32%), Gaps = 1/95 (1%)
Query: 15 SPGGGAVAAALGAPPPPAGPGMLPGPALRGPGPAGGVGGPGAAAFRPMGPAGPAAQ-YQR 73
+PG G P PP G + G A G+ GP P P AQ Q
Sbjct: 589 APGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQG 648
Query: 74 PGMSPGNRMPMAGLQVGPPAGSPFGAAAPLRPGMP 108
P PG PAG P P GMP
Sbjct: 649 PRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMP 683
Score = 30.0 bits (66), Expect = 5.5
Identities = 27/79 (34%), Positives = 33/79 (41%), Gaps = 11/79 (13%)
Query: 39 GPALRGPGPAGGVGGPG-----AAAFRPMGPAGPAAQYQRPGMSPGNR----MPMAGLQV 89
G +R PGP G G PG P GP GPA + Q P G++ P +
Sbjct: 25 GQDVRQPGPKGQKGEPGDIKDIVGPKGPPGPQGPAGE-QGPRGDRGDKGEKGAPGPRGRD 83
Query: 90 GPPAGSPFGAAAPLRPGMP 108
G P G+P P PG P
Sbjct: 84 GEP-GTPGNPGPPGPPGPP 101
Score = 29.3 bits (64), Expect = 9.4
Identities = 35/111 (31%), Positives = 40/111 (36%), Gaps = 10/111 (9%)
Query: 4 RGAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGPALRGPGPAG--GVGGPGAAAFRP 61
+G G P PG A G PP PAGP G PGP+G G+ GP P
Sbjct: 551 KGLPGAPGLRGLPGKDGETGAAG-PPGPAGPAGERGEQ-GAPGPSGFQGLPGPPG----P 604
Query: 62 MGPAGPAAQYQRPGM--SPGNRMPMAGLQVGPPAGSPFGAAAPLRPGMPPT 110
G G PG +PG P GSP G+P T
Sbjct: 605 PGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGT 655
>gi|208431824 forkhead box I3 [Homo sapiens]
Length = 420
Score = 52.4 bits (124), Expect = 1e-06
Identities = 31/69 (44%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Query: 1 MSGRGAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGPALRGPGPAGGVGGPGAAAFR 60
++G G GG P S A AA LGAPPPP PG GP L+ P PA G G F
Sbjct: 56 LNGPGVGG----PPSAAAAAAAAYLGAPPPPPPPGAAAGPFLQ-PPPAAGTFGCSQRPFA 110
Query: 61 PMGPAGPAA 69
PA PA+
Sbjct: 111 QPAPAAPAS 119
Score = 37.4 bits (85), Expect = 0.034
Identities = 45/130 (34%), Positives = 48/130 (36%), Gaps = 27/130 (20%)
Query: 3 GRGAGGFPLPPLSPGGGAVAAALGAPPP----------PAGPGMLPGPALRGPGPAGGVG 52
G G + P L P A AAA GAPP A P P L GP GVG
Sbjct: 6 GDNFGVYSQPGLPPPA-ATAAAPGAPPAARAPYGLADYAAPPAAAANPYLWLNGP--GVG 62
Query: 53 GPGAAAFRPMGPAGPAAQYQRPGMSPGNRMPMAG--LQVGPPAGS------PFGAAAPLR 104
GP +AA A AA Y P AG LQ P AG+ PF AP
Sbjct: 63 GPPSAA------AAAAAAYLGAPPPPPPPGAAAGPFLQPPPAAGTFGCSQRPFAQPAPAA 116
Query: 105 PGMPPTMMDP 114
P P P
Sbjct: 117 PASPAAPAGP 126
>gi|7706469 Kruppel-like factor [Homo sapiens]
Length = 355
Score = 52.0 bits (123), Expect = 1e-06
Identities = 47/130 (36%), Positives = 52/130 (40%), Gaps = 20/130 (15%)
Query: 12 PPLSPGGGAVAAALGAPPPPAGPGM--LPGPA---LRGPGPAGGVGGPGAAAFRPMGPA- 65
PP + GGG A G P G PGPA +RGPG P P GPA
Sbjct: 125 PPEADGGGGYGCAPGLTRGPRGLKREGAPGPAASCMRGPG-GRPPPPPDTPPLSPDGPAR 183
Query: 66 ----GPAAQYQRPGMSPGNRMPMAGLQVGPPAGSPFG-----AAAPLRPGMPPTMMDPFR 116
GP A + P PG P GL PPA FG AAA G+ P P
Sbjct: 184 LPAPGPRASFPPPFGGPGFGAPGPGLHYAPPAPPAFGLFDDAAAAAAALGLAP----PAA 239
Query: 117 KRLLVPQAQP 126
+ LL P A P
Sbjct: 240 RGLLTPPASP 249
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 51.6 bits (122), Expect = 2e-06
Identities = 38/108 (35%), Positives = 44/108 (40%), Gaps = 9/108 (8%)
Query: 5 GAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGPALRGP-GPAGGVGGPGAAAFRPMG 63
G G P PP G +G P PP G P GP GP GG+G PGA +G
Sbjct: 1228 GLQGLPGPPGEKGETGDVGQMGPPGPPGPRGPSGAPGADGPQGPPGGIGNPGA-----VG 1282
Query: 64 PAGPAAQYQRPGMSPGNRMPMA--GLQVGPPAGSPFGAAAPLRPGMPP 109
G + PG+ PG P G + P GAA P P PP
Sbjct: 1283 EKGEPGEAGEPGL-PGEGGPPGPKGERGEKGESGPSGAAGPPGPKGPP 1329
Score = 50.1 bits (118), Expect = 5e-06
Identities = 38/102 (37%), Positives = 43/102 (42%), Gaps = 5/102 (4%)
Query: 5 GAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGPALRGP-GPAGGVGGPGAAAFRPMG 63
G GFP PG G PP PG P RGP G AG +G PG P G
Sbjct: 1054 GLRGFPGDRGLPGPVGALGLKGNEGPPGPPGPAGSPGERGPAGAAGPIGIPGRPG--PQG 1111
Query: 64 PAGPAAQYQRPGMSPGNRMPMAGLQVGPPAGSPFGAAAPLRP 105
P GPA + PG G + P + P G P G A P+ P
Sbjct: 1112 PPGPAGEKGAPG-EKGPQGPAGRDGLQGPVGLP-GPAGPVGP 1151
Score = 46.2 bits (108), Expect = 7e-05
Identities = 49/145 (33%), Positives = 56/145 (38%), Gaps = 32/145 (22%)
Query: 5 GAGGFPLPPLSPGGGAVAAALG-----APPPPAG-PGMLPGPALRG-------PGPAGGV 51
G G P PP PG + G P PAG PG P LRG PGP G +
Sbjct: 1012 GERGHPGPPGPPGEQGLPGLAGKEGTKGDPGPAGLPGKDGPPGLRGFPGDRGLPGPVGAL 1071
Query: 52 GGPGAAAFRPMGPAGPAAQYQRPGMSPGNRMPMAGLQVGPPAGSPFGAAAPLRPGMPPTM 111
G G P GP GPA SPG R PAG+ P RPG P
Sbjct: 1072 GLKGNEG--PPGPPGPAG-------SPGER---------GPAGAAGPIGIPGRPG-PQGP 1112
Query: 112 MDPFRKRLLVPQAQPPMPAQRRGLK 136
P ++ + P PA R GL+
Sbjct: 1113 PGPAGEKGAPGEKGPQGPAGRDGLQ 1137
Score = 40.8 bits (94), Expect = 0.003
Identities = 36/106 (33%), Positives = 39/106 (36%), Gaps = 13/106 (12%)
Query: 4 RGAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGPALRG-PGPAGGVGGPGAAAFRPM 62
RG G P PG LG PP PG + G PGP G VG P
Sbjct: 663 RGDDGEVGPRGLPGEPGPRGLLGPKGPPGPPGPPGVTGMDGQPGPKGNVG--------PQ 714
Query: 63 GPAGPAAQYQRPGMSPGNRMPMAGLQVGPPAGSPFGAAAPLRPGMP 108
G GP Q PG +P +GPP G P PGMP
Sbjct: 715 GEPGPPGQQGNPG---AQGLPGPQGAIGPP-GEKGPLGKPGLPGMP 756
Score = 40.4 bits (93), Expect = 0.004
Identities = 36/117 (30%), Positives = 43/117 (36%), Gaps = 13/117 (11%)
Query: 5 GAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGPALRG-PGPAGGVGGPGAAAFR--- 60
G G PP G G+P P PG P RG PGPAG G G +
Sbjct: 1354 GPAGQDGPPGDKGDDGEPGQTGSPGPTGEPGPSGPPGKRGPPGPAGPEGRQGEKGAKGEA 1413
Query: 61 -------PMGPAGPAAQYQRPGMSPGNRMP-MAGLQVGPPAGSPFGAAAPL-RPGMP 108
GP GP +PG +P G Q P + P G P+ PG+P
Sbjct: 1414 GLEGPPGKTGPIGPQGAPGKPGPDGLRGIPGPVGEQGLPGSPGPDGPPGPMGPPGLP 1470
Score = 39.3 bits (90), Expect = 0.009
Identities = 40/105 (38%), Positives = 42/105 (40%), Gaps = 27/105 (25%)
Query: 4 RGAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGPALRGP-GPAGGVGGPGAAAFRPM 62
RG G P P + GG PAGP P RGP GP G G PG P
Sbjct: 924 RGITGKPGPKGNSGGDG----------PAGP-----PGERGPNGPQGPTGFPG-----PK 963
Query: 63 GPAGPAAQYQRPGMSPGNRMPMAGLQ--VGPPAGSPFGAAAPLRP 105
GP GP + PG PG R G Q GPP P G P P
Sbjct: 964 GPPGPPGKDGLPG-HPGQR-GETGFQGKTGPP--GPPGVVGPQGP 1004
Score = 38.5 bits (88), Expect = 0.015
Identities = 39/111 (35%), Positives = 42/111 (37%), Gaps = 14/111 (12%)
Query: 5 GAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGPALRGPGPAGGVGGPGAAAFR-PMG 63
G GFP P PG A G PP G PG PGP G G G R P G
Sbjct: 1339 GPVGFPGDPGPPGEPGPAGQDG-PPGDKGDDGEPGQT-GSPGPTGEPGPSGPPGKRGPPG 1396
Query: 64 PAGPAAQYQRPGMSPGNRMPMAGLQVGPPAGSPFGAAAPLRPGMPPTMMDP 114
PAGP + G AGL+ GPP G P+ P P P
Sbjct: 1397 PAGPEGRQGEKGAKGE-----AGLE-GPP-----GKTGPIGPQGAPGKPGP 1436
Score = 37.4 bits (85), Expect = 0.034
Identities = 30/93 (32%), Positives = 34/93 (36%), Gaps = 20/93 (21%)
Query: 10 PLPPLSPGGGAVAAALGAPPPPAGPGMLPGPALRGPGPAGGVGGPGAAAFR--------- 60
P P P G A P PAG L GP + PGPAG VG PG +
Sbjct: 1109 PQGPPGPAGEKGAPGEKGPQGPAGRDGLQGP-VGLPGPAGPVGPPGEDGDKGEIGEPGQK 1167
Query: 61 ----------PMGPAGPAAQYQRPGMSPGNRMP 83
P GP GP +PG S + P
Sbjct: 1168 GSKGDKGEQGPPGPTGPQGPIGQPGPSGADGEP 1200
Score = 36.6 bits (83), Expect = 0.059
Identities = 26/65 (40%), Positives = 29/65 (44%), Gaps = 18/65 (27%)
Query: 28 PPPPAGPGMLPGPALRGPGPAGGVGGPGAAAFRPMGPAGPAAQYQRPGMSPGNRMPMAGL 87
PP P GP LPGP GP G VG PG GP G RPG+ + +P
Sbjct: 470 PPGPEGPAGLPGPP-GTMGPTGQVGDPG-----ERGPPG------RPGLPGADGLP---- 513
Query: 88 QVGPP 92
GPP
Sbjct: 514 --GPP 516
Score = 36.6 bits (83), Expect = 0.059
Identities = 38/115 (33%), Positives = 46/115 (40%), Gaps = 16/115 (13%)
Query: 4 RGAGGFPLP--------PLSPGGGAVAAALGAPPPPAGPGMLPGPALRG-PGPAGGVGGP 54
+GA G P P P+ G + PP P GP LPG L+G GP G G P
Sbjct: 1428 QGAPGKPGPDGLRGIPGPVGEQGLPGSPGPDGPPGPMGPPGLPG--LKGDSGPKGEKGHP 1485
Query: 55 G-AAAFRPMGPAGPAAQYQRPGMSPGNRMPMAGLQVGPPAGSPFGAAAPLRPGMP 108
G P G G PG G+ P + P+G P G P PG+P
Sbjct: 1486 GLIGLIGPPGEQGEKGDRGLPG-PQGSSGPKGEQGITGPSG-PIGPPGP--PGLP 1536
Score = 35.0 bits (79), Expect = 0.17
Identities = 40/126 (31%), Positives = 44/126 (34%), Gaps = 32/126 (25%)
Query: 5 GAGGFPLPPLSPGGGAVAAALGAPPP-----PAGPGMLPGPA-----------------L 42
GA G P P PG G+P P GP PGPA
Sbjct: 1318 GAAGPPGPKGPPGDDGPK---GSPGPVGFPGDPGPPGEPGPAGQDGPPGDKGDDGEPGQT 1374
Query: 43 RGPGPAGGVGGPGAAAFR-PMGPAGPAAQYQRPGMSPGNRMPMAGLQVGPPAGSPFG-AA 100
PGP G G G R P GPAGP + G AGL+ P P G
Sbjct: 1375 GSPGPTGEPGPSGPPGKRGPPGPAGPEGRQGEKGAK-----GEAGLEGPPGKTGPIGPQG 1429
Query: 101 APLRPG 106
AP +PG
Sbjct: 1430 APGKPG 1435
Score = 35.0 bits (79), Expect = 0.17
Identities = 28/75 (37%), Positives = 30/75 (40%), Gaps = 13/75 (17%)
Query: 4 RGAGGFPLPPLSPGGGA---VAAALGAPPPPAGPGMLPGPALRGPGPAGGVGGPGAAAFR 60
+G G P P S G + G PP PG LPGP PGP G G G
Sbjct: 1500 KGDRGLPGPQGSSGPKGEQGITGPSGPIGPPGPPG-LPGP----PGPKGAKGSSG----- 1549
Query: 61 PMGPAGPAAQYQRPG 75
P GP G A PG
Sbjct: 1550 PTGPKGEAGHPGPPG 1564
Score = 34.7 bits (78), Expect = 0.22
Identities = 33/106 (31%), Positives = 39/106 (36%), Gaps = 19/106 (17%)
Query: 4 RGAGGFPLPPL------SPGGGAVAAALGAPPPPAGPGMLPGPALRG-PGPAGGVGGPGA 56
+G G P PP PG G P PP G P +G PGP G +G
Sbjct: 687 KGPPGPPGPPGVTGMDGQPGPKGNVGPQGEPGPPGQQG---NPGAQGLPGPQGAIG---- 739
Query: 57 AAFRPMGPAGPAAQYQRPGMSPGNRMPMAGLQVGPPAGSPFGAAAP 102
P G GP + PGM + P + GPP G G P
Sbjct: 740 ----PPGEKGPLGKPGLPGMPGADGPPGHPGKEGPP-GEKGGQGPP 780
Score = 34.3 bits (77), Expect = 0.29
Identities = 32/100 (32%), Positives = 39/100 (39%), Gaps = 23/100 (23%)
Query: 28 PPPPAGPGMLPGPALRGPGPAGGVGGPGAAAFRPM-------------GPAGPAAQYQRP 74
PP P GP GP + PGP+G G PG + + GP GP P
Sbjct: 1178 PPGPTGP---QGP-IGQPGPSGADGEPGPRGQQGLFGQKGDEGPRGFPGPPGPVGLQGLP 1233
Query: 75 GMSPGNRMPMAGL-QVGPPA----GSPFGAAAPLRPGMPP 109
G PG + + Q+GPP P GA P PP
Sbjct: 1234 G-PPGEKGETGDVGQMGPPGPPGPRGPSGAPGADGPQGPP 1272
Score = 34.3 bits (77), Expect = 0.29
Identities = 36/114 (31%), Positives = 39/114 (34%), Gaps = 25/114 (21%)
Query: 5 GAGGFPLPP--------LSPGGGAVAAALGAPPPPAGPGMLPGPALRGPGPAGGVGGPGA 56
G GG P P P G A PP GP PGP + PG G G PG
Sbjct: 1297 GEGGPPGPKGERGEKGESGPSGAAGPPGPKGPPGDDGPKGSPGP-VGFPGDPGPPGEPGP 1355
Query: 57 AAFRPMGPAGPAAQYQRPGM--SPGNRMPMAGLQVGPPAGSPFGAAAPLRPGMP 108
A GP G PG SPG P G P + P + G P
Sbjct: 1356 AG--QDGPPGDKGDDGEPGQTGSPG------------PTGEPGPSGPPGKRGPP 1395
Score = 34.3 bits (77), Expect = 0.29
Identities = 27/75 (36%), Positives = 31/75 (41%), Gaps = 11/75 (14%)
Query: 5 GAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGP----ALRGP-GPAGGVGGPGAAAF 59
G G P G + +G P PP PG PGP GP GP G G PG
Sbjct: 1507 GPQGSSGPKGEQGITGPSGPIGPPGPPGLPGP-PGPKGAKGSSGPTGPKGEAGHPG---- 1561
Query: 60 RPMGPAGPAAQYQRP 74
P GP GP + +P
Sbjct: 1562 -PPGPPGPPGEVIQP 1575
Score = 33.9 bits (76), Expect = 0.38
Identities = 37/101 (36%), Positives = 41/101 (40%), Gaps = 15/101 (14%)
Query: 29 PPPAGPGMLPGP-----ALRGPGPAGGVGG------PGAAAFRPMGPAGPAAQYQRPG-M 76
P GPGM + GP G G PG P GP GPA PG M
Sbjct: 427 PSEIGPGMPANQDTIYEGIGGPRGEKGQKGEPAIIEPGMLIEGPPGPEGPAGLPGPPGTM 486
Query: 77 SPGNRMPMAGLQVGPPAGSPFGAAAPLRPGMPPTM-MDPFR 116
P ++ G + GPP G P A PG P TM M PFR
Sbjct: 487 GPTGQVGDPG-ERGPP-GRPGLPGADGLPGPPGTMLMLPFR 525
Score = 33.1 bits (74), Expect = 0.65
Identities = 27/74 (36%), Positives = 30/74 (40%), Gaps = 11/74 (14%)
Query: 5 GAGGFPLPPL---SPGGGAVAAALGAPPPPAGPGMLPGPALRG-------PGPAGGVGGP 54
G G P PP +PG + GA PP G L P L G PG G G P
Sbjct: 712 GPQGEPGPPGQQGNPGAQGLPGPQGAIGPPGEKGPLGKPGLPGMPGADGPPGHPGKEGPP 771
Query: 55 GAAAFR-PMGPAGP 67
G + P GP GP
Sbjct: 772 GEKGGQGPPGPQGP 785
Score = 33.1 bits (74), Expect = 0.65
Identities = 34/123 (27%), Positives = 44/123 (35%), Gaps = 23/123 (18%)
Query: 5 GAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGPALRGPGPAGGVGGPGAAAFRPMGP 64
G G P P G + +G P PG GP PGP G G PG G
Sbjct: 1426 GPQGAPGKPGPDGLRGIPGPVGEQGLPGSPGP-DGP----PGPMGPPGLPGL-----KGD 1475
Query: 65 AGPAAQYQRPGM-----SPGNRMPMAGLQVGPPAGSP--------FGAAAPLRPGMPPTM 111
+GP + PG+ PG + + P GS G + P+ P PP +
Sbjct: 1476 SGPKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSSGPKGEQGITGPSGPIGPPGPPGL 1535
Query: 112 MDP 114
P
Sbjct: 1536 PGP 1538
Score = 32.7 bits (73), Expect = 0.85
Identities = 45/165 (27%), Positives = 54/165 (32%), Gaps = 51/165 (30%)
Query: 5 GAGGFPLPPLSPGGGAVAAALGAPPPPAGPGM-----LPGP---ALRGPGPAGGVGGPGA 56
G G P PP + G G PP PG+ LPGP L P GG G G+
Sbjct: 475 GPAGLPGPPGTMGPTGQVGDPGERGPPGRPGLPGADGLPGPPGTMLMLPFRFGGGGDAGS 534
Query: 57 ------------------AAFRPMGPAGPAAQYQRPGMSPGNRMPMAGLQVGPP-AGSPF 97
A GPAGP RPG VGPP +G
Sbjct: 535 KGPMVSAQESQAQAILQQARLALRGPAGPMGLTGRPG------------PVGPPGSGGLK 582
Query: 98 GAAAPLRPGMPPTMMDPFRKRLLVPQAQPPMPAQRRGLKRRKMAD 142
G + P P + PP PA + G + R +D
Sbjct: 583 GEPGDVGPQGPRGVQG------------PPGPAGKPGRRGRAGSD 615
Score = 32.7 bits (73), Expect = 0.85
Identities = 39/133 (29%), Positives = 44/133 (33%), Gaps = 23/133 (17%)
Query: 4 RGAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGPALRG-PGPAGGVGGPGAAAFRPM 62
+G G P P PG ++G P P G G G PGP G G G P
Sbjct: 864 KGKLGVPGLPGYPGRQGPKGSIGFPGFPGANGEKGGRGTPGKPGPRGQRGPTG-----PR 918
Query: 63 GPAGPAAQYQRPGMSPGNRMPMAGLQVGPPAGSPFGAAAPLRPGMPPTMMDPFRKRLLVP 122
G GP +PG P PAG P G P P P P
Sbjct: 919 GERGPRGITGKPG-------PKGNSGGDGPAGPP-GERGPNGPQGPTGFPGP-------- 962
Query: 123 QAQPPMPAQRRGL 135
PP P + GL
Sbjct: 963 -KGPPGPPGKDGL 974
Score = 29.6 bits (65), Expect = 7.2
Identities = 36/112 (32%), Positives = 39/112 (34%), Gaps = 16/112 (14%)
Query: 5 GAGGFPLPPLSPGGGAVAAALGA--PPPPAGPGMLPGP-------ALRG-PGPAGGVGGP 54
G G PP PG G PP P GP PGP +RG G G G
Sbjct: 754 GMPGADGPPGHPGKEGPPGEKGGQGPPGPQGPIGYPGPRGVKGADGIRGLKGTKGEKGED 813
Query: 55 GAAAFR-PMGPAGPAAQYQRPGMSPGNRMPMAGLQVGPPAGSPFGAAAPLRP 105
G F+ MG G + PG G P G P G P PL P
Sbjct: 814 GFPGFKGDMGIKGDRGEIGPPG-PRGEDGPEGPKGRGGPNGDP----GPLGP 860
>gi|4507869 vasodilator-stimulated phosphoprotein [Homo sapiens]
Length = 380
Score = 51.2 bits (121), Expect = 2e-06
Identities = 59/211 (27%), Positives = 79/211 (37%), Gaps = 37/211 (17%)
Query: 8 GFPLPPLSPGGGAVAAALGA--PPPPAGPGMLPGPALRGPGPAGGVGGPGAAA------F 59
G P PP P G AAA GA PPPA P PA +GPG GG G PG AA
Sbjct: 181 GPPPPPGLPPSGVPAAAHGAGGGPPPAP----PLPAAQGPG-GGGAGAPGLAAAIAGAKL 235
Query: 60 RPM--------GPAGPAAQYQRPG----MSPGNRM---PMAGLQVGPPAGSPFGAAAPLR 104
R + GP P A+ R G M N M QVG A
Sbjct: 236 RKVSKQEEASGGPTAPKAESGRSGGGGLMEEMNAMLARRRKATQVGEKTPKDESANQEEP 295
Query: 105 PGMPPTMMDPFRKRLLVPQAQPPMPAQRRGLKRRKMADKVLPQRIRELVPESQAYMDLLA 164
P + R+ P L R K + V + P S Y DL
Sbjct: 296 EARVPAQSESVRR---------PWEKNSTTLPRMKSSSSVTTSETQPCTPSSSDYSDLQR 346
Query: 165 FERKLDQTIARKRMEIQEAIKKPLTQKRKLR 195
+++L + + ++ +++E I + Q+ + R
Sbjct: 347 VKQELLEEVKKELQKVKEEIIEAFVQELRKR 377
>gi|4507127 small nuclear ribonucleoprotein polypeptide C [Homo
sapiens]
Length = 159
Score = 50.8 bits (120), Expect = 3e-06
Identities = 40/106 (37%), Positives = 46/106 (43%), Gaps = 23/106 (21%)
Query: 11 LPPLSPGGGAVAAALGAPPP----PAGPGMLPGPALRGPGPAGGVGGPGAAAFRPMGPAG 66
+PP A A+ PPP P PGM+P P + GP P + GP P+GPA
Sbjct: 62 IPPTPFSAPPPAGAMIPPPPSLPGPPRPGMMPAPHMGGP-PMMPMMGPPPPGMMPVGPA- 119
Query: 67 PAAQYQRPGMSP--GNRMPMAGLQVGPPAGSPFGAAAPLRPGMPPT 110
PGM P G MPM GPP P P RP M PT
Sbjct: 120 -------PGMRPPMGGHMPM---MPGPPMMRP-----PARPMMVPT 150
>gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]
Length = 1860
Score = 50.4 bits (119), Expect = 4e-06
Identities = 47/142 (33%), Positives = 51/142 (35%), Gaps = 27/142 (19%)
Query: 6 AGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGPALRGP-GPAGGVGGPGAAAFRPMGP 64
AG P P L G G P PP PG+ P RGP GP G G PG GP
Sbjct: 615 AGSTPFPLLM-GPPGPKGDCGLPGPPGLPGLPGIPGARGPRGPPGPYGNPGLP-----GP 668
Query: 65 AGPAAQYQRPGMSPGNR-------MPMAGLQVGP-------------PAGSPFGAAAPLR 104
G Q PG+SPG M + GL P PAG P P
Sbjct: 669 PGAKGQKGDPGLSPGKAHDGAKGDMGLPGLSGNPGPPGRKGHKGYPGPAGHPGEQGQPGP 728
Query: 105 PGMPPTMMDPFRKRLLVPQAQP 126
G P P R+ L P P
Sbjct: 729 EGSPGAKGYPGRQGLPGPVGDP 750
Score = 44.3 bits (103), Expect = 3e-04
Identities = 43/125 (34%), Positives = 49/125 (39%), Gaps = 18/125 (14%)
Query: 4 RGAGGFPLPPLSPGGGAVAAALG--APPPPAGPGMLPGPALRGPGPAGGVGGPGAA---- 57
+G G P PP PG + A G PP P G LPGP PG G G PG +
Sbjct: 630 KGDCGLPGPPGLPGLPGIPGARGPRGPPGPYGNPGLPGP----PGAKGQKGDPGLSPGKA 685
Query: 58 ---AFRPMGPAGPAAQYQRPGMSPGNRMP----MAGLQVGP-PAGSPFGAAAPLRPGMPP 109
A MG G + PG P G Q P P GSP P R G+P
Sbjct: 686 HDGAKGDMGLPGLSGNPGPPGRKGHKGYPGPAGHPGEQGQPGPEGSPGAKGYPGRQGLPG 745
Query: 110 TMMDP 114
+ DP
Sbjct: 746 PVGDP 750
Score = 38.5 bits (88), Expect = 0.015
Identities = 42/134 (31%), Positives = 47/134 (35%), Gaps = 27/134 (20%)
Query: 5 GAGGFPLPPLSPGGGAVAAALGAPPPP---------AGPGMLPGPALRGP-GPAGGVGGP 54
G G P P S G + +G P P PGM RGP GP G G
Sbjct: 1018 GPPGVPGPKGSMGHPGMPGGMGTPGEPGPQGPPGSRGPPGMRGAKGRRGPRGPDGPAGEQ 1077
Query: 55 GAAAFRPMGPAGPAAQYQRPGMS--PGNR-------MPMAGLQVGPPA-----GSPFGAA 100
G+ + GP GP + RPG G R P GPP G P G
Sbjct: 1078 GSRGLK--GPPGPQGRPGRPGQQGVAGERGHLGSRGFPGIPGPSGPPGTKGLPGEP-GPQ 1134
Query: 101 APLRPGMPPTMMDP 114
P P PP M P
Sbjct: 1135 GPQGPIGPPGEMGP 1148
Score = 37.7 bits (86), Expect = 0.026
Identities = 40/129 (31%), Positives = 50/129 (38%), Gaps = 21/129 (16%)
Query: 5 GAGGFPLPPLS------PGGGAVAAALGAPPPPAGPGMLPGPALRG-PGPAGGVGGPGAA 57
G G P PP PG G P P PG P +G PGP G G G+
Sbjct: 697 GLSGNPGPPGRKGHKGYPGPAGHPGEQGQPGPEGSPGAKGYPGRQGLPGPVGDPGPKGSR 756
Query: 58 AFRPM----GPAGPAAQYQRPGMSPGNR--MPMAGL-----QVGPPA--GSPFGAAAPLR 104
+ + G G + PG+ PG R M M G + GPP G+P P
Sbjct: 757 GYIGLPGLFGLPGSDGERGLPGV-PGKRGKMGMPGFPGVFGERGPPGLDGNPGELGLPGP 815
Query: 105 PGMPPTMMD 113
PG+P + D
Sbjct: 816 PGVPGLIGD 824
Score = 35.0 bits (79), Expect = 0.17
Identities = 27/76 (35%), Positives = 30/76 (39%), Gaps = 22/76 (28%)
Query: 5 GAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGPALRGP-GPAGGVGGPGAAAFRPMG 63
G+ GFP G P P PG P GP GP G +G PG MG
Sbjct: 1108 GSRGFP---------------GIPGPSGPPGTKGLPGEPGPQGPQGPIGPPG-----EMG 1147
Query: 64 PAGPAAQYQRPGMSPG 79
P GP PG+ PG
Sbjct: 1148 PKGPPGAVGEPGL-PG 1162
Score = 34.3 bits (77), Expect = 0.29
Identities = 32/104 (30%), Positives = 37/104 (35%), Gaps = 7/104 (6%)
Query: 5 GAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGPALRGPGPAGGVGGPGAAAFRPMGP 64
G G P PP +PG +LG P PG + A PG AG G G P+GP
Sbjct: 1270 GVPGDPGPPGTPGPKGSRGSLG---PTGAPGRM--GAQGEPGLAGYDGHKGIVG--PLGP 1322
Query: 65 AGPAAQYQRPGMSPGNRMPMAGLQVGPPAGSPFGAAAPLRPGMP 108
GP + G P P G P PG P
Sbjct: 1323 PGPKGEKGEQGEDGKAEGPPGPPGDRGPVGDRGDRGEPGDPGYP 1366
Score = 32.7 bits (73), Expect = 0.85
Identities = 36/116 (31%), Positives = 40/116 (34%), Gaps = 23/116 (19%)
Query: 5 GAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGPALRGPGPAGGVGGPGAAAF-RPMG 63
GA G P P G G P P PG + P GP G G PGA P G
Sbjct: 883 GARGKPGPLGKVGDKGSIGFPGPPGPEGFPGDIGPPG--DNGPEGMKGKPGARGLPGPRG 940
Query: 64 PAGPAAQYQRPGMSPGNRMPMAGLQVGPPA-----GSPFGAAAPLRPGMPPTMMDP 114
GP G+ PM GPP G P P RPG+ +P
Sbjct: 941 QLGP----------EGDEGPM-----GPPGAPGLEGQPGRKGFPGRPGLDGVKGEP 981
Score = 30.4 bits (67), Expect = 4.2
Identities = 38/122 (31%), Positives = 47/122 (38%), Gaps = 28/122 (22%)
Query: 15 SPGGGAVAAALGAPPPP-----------AGPGMLPGPALRGPGPAGGVGGPGAAAFRPMG 63
+PG V G P P AGP LPG G AG G G G
Sbjct: 1413 APGRRGVQGLQGLPGPRGVVGRQGLEGIAGPDGLPGR----DGQAGQQGEQGDDG--DPG 1466
Query: 64 PAGPAAQYQRPGMS--PGNRMP-----MAGL--QVGPPA--GSPFGAAAPLRPGMPPTMM 112
P GPA + PG++ PG + P +GL Q+GPP G+ P G P +
Sbjct: 1467 PMGPAGKRGNPGVAGLPGAQGPPGFKGESGLPGQLGPPGKRGTEGRTGLPGNQGEPGSKG 1526
Query: 113 DP 114
P
Sbjct: 1527 QP 1528
Score = 29.6 bits (65), Expect = 7.2
Identities = 32/97 (32%), Positives = 37/97 (38%), Gaps = 7/97 (7%)
Query: 4 RGAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGPALRG-PGPAG--GVGGPGAAAFR 60
RG G P P PG V G P PG PGP RG PGP G G GP +
Sbjct: 1354 RGDRGEPGDPGYPGQEGVQGLRGKPGQQGQPGH-PGP--RGWPGPKGSKGAEGPKGKQGK 1410
Query: 61 PMGPAGPAAQYQRPGMSPGNRMPMAGLQ-VGPPAGSP 96
P Q + P + GL+ + P G P
Sbjct: 1411 AGAPGRRGVQGLQGLPGPRGVVGRQGLEGIAGPDGLP 1447
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 50.1 bits (118), Expect = 5e-06
Identities = 45/112 (40%), Positives = 47/112 (41%), Gaps = 30/112 (26%)
Query: 5 GAGGFPLPPLSPG--------GGAVAAALGAPPPPAGPGMLPGPALRGPGPAGGVGGPGA 56
G GF PP + G G A A PP PAGP GP PGP G VG PGA
Sbjct: 809 GPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPA---GP----PGPIGNVGAPGA 861
Query: 57 AAFRPMGPAGPAAQYQRPGMSPGNRMPMAGLQVGPPAGSPFGAAAPLRPGMP 108
R G AGP PG A +VGPP P G A P PG P
Sbjct: 862 KGAR--GSAGPPGATGFPG---------AAGRVGPPG--PSGNAGP--PGPP 898
Score = 48.5 bits (114), Expect = 1e-05
Identities = 45/117 (38%), Positives = 49/117 (41%), Gaps = 16/117 (13%)
Query: 5 GAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGPALRG-PGPAGGVGGPG----AAAF 59
G G P P PG A +G P P G RG PGP G VG G A A
Sbjct: 563 GRPGPPGP---PGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQ 619
Query: 60 RPMGPAGPAAQ--YQRPGMSPGNRMPMAGLQVGPPAGSPFGAAAPLRPGMPPTMMDP 114
P GPAGPA + Q P SPG GL PAG P A P G+P + P
Sbjct: 620 GPPGPAGPAGERGEQGPAGSPG----FQGLP--GPAGPPGEAGKPGEQGVPGDLGAP 670
Score = 47.8 bits (112), Expect = 3e-05
Identities = 41/106 (38%), Positives = 46/106 (43%), Gaps = 19/106 (17%)
Query: 4 RGAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGPALRGPGPAGGVGGPGAAAFRPMG 63
+GA G PP + G A +G P P G PGP PGPAG GG G P G
Sbjct: 862 KGARGSAGPPGATGFPGAAGRVGPPGPSGNAGP-PGP----PGPAGKEGGKG-----PRG 911
Query: 64 PAGPAAQYQRPG-MSPGNRMPMAGLQVGPPAGSPFGAAAPLRPGMP 108
GPA RPG + P AG + P A P GA PG P
Sbjct: 912 ETGPAG---RPGEVGPPGPPGPAGEKGSPGADGPAGA-----PGTP 949
Score = 46.6 bits (109), Expect = 6e-05
Identities = 46/121 (38%), Positives = 48/121 (39%), Gaps = 18/121 (14%)
Query: 4 RGAGGFPLPPLSPGGGAVAAALGAPPP--PAGPGMLPGP--ALRGPGPAGGVGGPGAAAF 59
RG G P P + G A G P P PAGP PG A GP G G G
Sbjct: 310 RGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGV 369
Query: 60 R----PMGPAGPAAQYQRPGM--SPG----NRMP-MAGLQVGPPAGSPFGAAAPLRPGMP 108
R P GPAG A PG PG N P +AG P A P G P PG P
Sbjct: 370 RGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSG---PQGPGGP 426
Query: 109 P 109
P
Sbjct: 427 P 427
Score = 43.9 bits (102), Expect = 4e-04
Identities = 39/111 (35%), Positives = 46/111 (41%), Gaps = 25/111 (22%)
Query: 12 PPLSPGGGAVAAALGAPPPPAGPGMLPGPALRG-----------PGPAGGVGGPGAAAFR 60
P PG + G P PP PG P L G GG+ PG
Sbjct: 125 PAGPPGRDGIPGQPGLPGPPGPPGPPGPPGLGGNFAPQLSYGYDEKSTGGISVPG----- 179
Query: 61 PMGPAGPAAQYQRPGMSPGNRMPMAGLQVGPPA--GSPFGAAAPLRPGMPP 109
PMGP+GP PG +PG + G Q GPP G P GA+ P+ P PP
Sbjct: 180 PMGPSGPRGLPGPPG-APGPQ----GFQ-GPPGEPGEP-GASGPMGPRGPP 223
Score = 43.5 bits (101), Expect = 5e-04
Identities = 45/129 (34%), Positives = 49/129 (37%), Gaps = 30/129 (23%)
Query: 4 RGAGGFPLPPLSPGGGAVAAALG--APPPPAGPGMLPGPALRGP-------------GPA 48
RG G P P PG + A G PP P GP P L GP G
Sbjct: 970 RGFPGLPGPSGEPGKQGPSGASGERGPPGPMGP-----PGLAGPPGESGREGAPGAEGSP 1024
Query: 49 GGVGGPGAAAFR-PMGPAGPAAQYQRPG----MSPGNRMPMAGLQVGP--PAG--SPFGA 99
G G PGA R GPAGP PG + P + G + GP PAG P GA
Sbjct: 1025 GRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRG-ETGPAGPAGPVGPVGA 1083
Query: 100 AAPLRPGMP 108
P P P
Sbjct: 1084 RGPAGPQGP 1092
Score = 43.1 bits (100), Expect = 6e-04
Identities = 40/111 (36%), Positives = 44/111 (39%), Gaps = 14/111 (12%)
Query: 5 GAGGFPLPPLSPGGGAVAAALGAPPP---PAGPGMLPGPALRGPGPAGGVGGP-GAAAFR 60
G G PP G A G P P P PG GP RG A GV GP G A R
Sbjct: 452 GPVGVQGPPGPAGEEGKRGARGEPGPTGLPGPPGERGGPGSRGFPGADGVAGPKGPAGER 511
Query: 61 ----PMGPAGPAAQYQRPGMS--PGNRMPMAGLQVGPPAGSPFGAAAPLRP 105
P GP G + RPG + PG + GL P + P G P P
Sbjct: 512 GSPGPAGPKGSPGEAGRPGEAGLPGAK----GLTGSPGSPGPDGKTGPPGP 558
Score = 42.0 bits (97), Expect = 0.001
Identities = 36/103 (34%), Positives = 40/103 (38%), Gaps = 13/103 (12%)
Query: 13 PLSPGGGAVAAALGAPPPPAGPGMLPGPALR--GPGPAGGVGGPGAA-AFRPMGPAGPAA 69
P P G + P GP LPG R PGPAG G GA A P GP GPA
Sbjct: 282 PAGPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAG 341
Query: 70 QYQRPGM--SPGNRMPMA--------GLQVGPPAGSPFGAAAP 102
PG + G P G++ P P GAA P
Sbjct: 342 PPGFPGAVGAKGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAGP 384
Score = 41.6 bits (96), Expect = 0.002
Identities = 51/157 (32%), Positives = 58/157 (36%), Gaps = 36/157 (22%)
Query: 4 RGAGGFPLPPLSPGGGAVAAALGAPPPPAGP-GMLPGPALRG-PGPAG--GVGGPGAAAF 59
RG G P+ P P G P PAGP G P RG PGP G G GP A
Sbjct: 763 RGLTG-PIGPPGPAGAPGDKGESGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADG 821
Query: 60 RP--------------MGPAGPAAQYQRPGM-----SPGNRMPMAGLQVGPPAGSPF-GA 99
+P GP GPA PG +PG + A GPP + F GA
Sbjct: 822 QPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAK--GARGSAGPPGATGFPGA 879
Query: 100 AAPLRPGMPPTMMDPFRKRLLVPQAQPPMPAQRRGLK 136
A + P P P PP PA + G K
Sbjct: 880 AGRVGPPGPSGNAGP---------PGPPGPAGKEGGK 907
Score = 41.6 bits (96), Expect = 0.002
Identities = 40/139 (28%), Positives = 43/139 (30%), Gaps = 38/139 (27%)
Query: 5 GAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGPALRGP-------------GPAGGV 51
GA G P SPG G PP PG P GP GPAG V
Sbjct: 1019 GAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPV 1078
Query: 52 GGPGAAAFRPMGPAGPAAQYQRPGM-----------------------SPGNRMPMAGLQ 88
G GA P GP GP G SPG + P
Sbjct: 1079 GPVGARG--PAGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASG 1136
Query: 89 VGPPAGSPFGAAAPLRPGM 107
P G P A AP + G+
Sbjct: 1137 PAGPRGPPGSAGAPGKDGL 1155
Score = 39.7 bits (91), Expect = 0.007
Identities = 30/82 (36%), Positives = 33/82 (40%), Gaps = 17/82 (20%)
Query: 5 GAGGFPLPPLSPGGGAVAAALGAPPPPAGPGM-----------LPGPALRGPGPAGGVGG 53
G G P PP SPG + A G P PG LPGP + PGP G G
Sbjct: 1115 GLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGAPGKDGLNGLPGP-IGPPGPRGRTGD 1173
Query: 54 PGAAAFRPMGPAGPAAQYQRPG 75
G P+GP GP PG
Sbjct: 1174 AG-----PVGPPGPPGPPGPPG 1190
Score = 39.3 bits (90), Expect = 0.009
Identities = 41/124 (33%), Positives = 46/124 (37%), Gaps = 19/124 (15%)
Query: 5 GAGGFPLPPLSPGGGAVAAALGAPPPPAGPGML--PGPALRGPGPAGGVGGPG----AAA 58
G G P PP G G P PG + PGP PGPAG G PG A A
Sbjct: 890 GNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGP----PGPAGEKGSPGADGPAGA 945
Query: 59 FRPMGPAGPAAQYQRPGMSPGNRMPMAGLQVGPPAGSP--------FGAAAPLRPGMPPT 110
GP G A Q G+ PG R + P+G P G P P PP
Sbjct: 946 PGTPGPQGIAGQRGVVGL-PGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPG 1004
Query: 111 MMDP 114
+ P
Sbjct: 1005 LAGP 1008
Score = 39.3 bits (90), Expect = 0.009
Identities = 42/112 (37%), Positives = 43/112 (38%), Gaps = 27/112 (24%)
Query: 4 RGAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGPALRGP-GPAGGVGGPGAAAFRPM 62
RG G PP PG P GP GPA GP GP G G PG +
Sbjct: 1111 RGFSGLQGPPGPPGS----------PGEQGPSGASGPA--GPRGPPGSAGAPGKDGLNGL 1158
Query: 63 -GPAGPAAQYQRPGMSPGNRMPMAGLQVGPPAGSPFGAAAPLRPGMPPTMMD 113
GP GP PG P R AG VGPP P G P PG P D
Sbjct: 1159 PGPIGP------PG--PRGRTGDAG-PVGPP--GPPGPPGP--PGPPSAGFD 1197
Score = 38.9 bits (89), Expect = 0.012
Identities = 38/118 (32%), Positives = 41/118 (34%), Gaps = 16/118 (13%)
Query: 5 GAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGPALRGPGPAGGVGGPGAAAFR--PM 62
GA G P +PG +A G P G P L GP G GP A+ P
Sbjct: 938 GADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPP 997
Query: 63 GPAGPAAQYQRPGMSPGNRMPMA----GLQVGP----------PAGSPFGAAAPLRPG 106
GP GP PG S P A G P PAG P AP PG
Sbjct: 998 GPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPG 1055
Score = 38.1 bits (87), Expect = 0.020
Identities = 40/121 (33%), Positives = 43/121 (35%), Gaps = 17/121 (14%)
Query: 4 RGAGGFPLPPLSPGGGAVAAALGAPP---------PPAGPGMLPGPALRG----PGPAGG 50
RGA G P P G A G+P P PG P +G GPAG
Sbjct: 733 RGAAGLPGPKGDRGDAGPKGADGSPGKDGVRGLTGPIGPPGPAGAPGDKGESGPSGPAGP 792
Query: 51 VGGPGAAAFR-PMGPAGPAAQYQRPGM--SPGNRMPMAGLQVGPPAGSPFGAAAPLRPGM 107
G GA R GP GPA PG PG + AG P G A P P
Sbjct: 793 TGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPP-GPAGPAGPPG 851
Query: 108 P 108
P
Sbjct: 852 P 852
Score = 37.7 bits (86), Expect = 0.026
Identities = 41/141 (29%), Positives = 47/141 (33%), Gaps = 42/141 (29%)
Query: 1 MSGRGAGGFPLPPLSPGGGAVAAALGAPPPPA-----GPGMLPGPALRG----------- 44
M G G P PP +PG G P P GP PGP +
Sbjct: 181 MGPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGR 240
Query: 45 ------PGPAGGVGGPGAAAFRPM----------------GPAGPAAQYQRPGM--SPGN 80
PGP G G PG A M GPAGP + PG +PG
Sbjct: 241 PGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQ 300
Query: 81 RMP--MAGLQVGPPAGSPFGA 99
P + G + P A P GA
Sbjct: 301 MGPRGLPGERGRPGAPGPAGA 321
Score = 37.7 bits (86), Expect = 0.026
Identities = 37/108 (34%), Positives = 42/108 (38%), Gaps = 15/108 (13%)
Query: 4 RGAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGPALRG-PGPAGGVGGPGAAAFRPM 62
RGA G +PG GAP P G P L+G PG G G PG R
Sbjct: 697 RGANG------APGNDGAKGDAGAPGAPGSQG---APGLQGMPGERGAAGLPGPKGDR-- 745
Query: 63 GPAGPAAQYQRPGMSPGNRMPMAGLQVGPPAGSP--FGAAAPLRPGMP 108
G AGP PG G R + PAG+P G + P P P
Sbjct: 746 GDAGPKGADGSPG-KDGVRGLTGPIGPPGPAGAPGDKGESGPSGPAGP 792
Score = 37.4 bits (85), Expect = 0.034
Identities = 49/152 (32%), Positives = 54/152 (35%), Gaps = 31/152 (20%)
Query: 3 GRGAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGPALR-----------------GP 45
G G+ GFP G A G+P P AGP PG A R P
Sbjct: 489 GPGSRGFPGADGVAGPKGPAGERGSPGP-AGPKGSPGEAGRPGEAGLPGAKGLTGSPGSP 547
Query: 46 GPAGGVGGPGAAAF--RPMGPAGPAAQYQRPGMS-PGNRMPMAGLQVGPPAGSPFGAAAP 102
GP G G PG A RP P P A+ Q M PG + AG P A
Sbjct: 548 GPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPK---------GAAGEPGKAGER 598
Query: 103 LRPGMPPTMMDPFRKRLLVPQAQPPMPAQRRG 134
PG PP + P K PP PA G
Sbjct: 599 GVPG-PPGAVGPAGKDGEAGAQGPPGPAGPAG 629
Score = 36.2 bits (82), Expect = 0.077
Identities = 45/139 (32%), Positives = 50/139 (35%), Gaps = 39/139 (28%)
Query: 5 GAGGFPLPPLSPGGGAVAAALGAPPP--PAGPG---------------MLPGPA------ 41
G G P PP + G GA P PAGP LPGPA
Sbjct: 596 GERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEA 655
Query: 42 -----------LRGPGPAGGVGGPGAAAFRPM-GPAGPAAQYQRPGMSPGNRMPMAGLQV 89
L PGP+G G G R + GP GPA G +PGN A
Sbjct: 656 GKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGANG-APGN--DGAKGDA 712
Query: 90 GPPAGSPFGAAAPLRPGMP 108
G P G+P AP GMP
Sbjct: 713 GAP-GAPGSQGAPGLQGMP 730
Score = 35.0 bits (79), Expect = 0.17
Identities = 31/87 (35%), Positives = 32/87 (36%), Gaps = 10/87 (11%)
Query: 5 GAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGPALRG----PGPAGGVGGPGA---- 56
G G P PG V LGAP P G P RG PGPAG G GA
Sbjct: 647 GPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGANGAPGND 706
Query: 57 AAFRPMGPAGPAAQYQRPGMS--PGNR 81
A G G PG+ PG R
Sbjct: 707 GAKGDAGAPGAPGSQGAPGLQGMPGER 733
Score = 34.3 bits (77), Expect = 0.29
Identities = 40/129 (31%), Positives = 46/129 (35%), Gaps = 38/129 (29%)
Query: 4 RGAGGFPLP------PLSPGGGAVAAALGAPPPPAGPGMLPGPA-LRGPGPAGGV----- 51
+G GG P P P +PG A G P P G PGPA G A G
Sbjct: 421 QGPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGP-PGPAGEEGKRGARGEPGPTG 479
Query: 52 --------GGPGAAAF----RPMGPAGPAAQYQRPGMSPGNRMPMAGLQVGPPAGSPFGA 99
GGPG+ F GP GPA + PG + P GSP A
Sbjct: 480 LPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPA-------------GPKGSPGEA 526
Query: 100 AAPLRPGMP 108
P G+P
Sbjct: 527 GRPGEAGLP 535
Score = 34.3 bits (77), Expect = 0.29
Identities = 42/153 (27%), Positives = 51/153 (33%), Gaps = 33/153 (21%)
Query: 3 GRGAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGPALRGPGPAGGVGGP-GAAAFRP 61
G+G G P PG +G P PP G P GP A G GP G A R
Sbjct: 906 GKGPRGETGPAGRPG------EVGPPGPPGPAGEKGSPGADGPAGAPGTPGPQGIAGQRG 959
Query: 62 M----------------GPAGPAAQYQRPGMSPGNRMPMAGL----QVGPPA-----GSP 96
+ GP+G + Q P + G R P + GPP G+P
Sbjct: 960 VVGLPGQRGERGFPGLPGPSGEPGK-QGPSGASGERGPPGPMGPPGLAGPPGESGREGAP 1018
Query: 97 FGAAAPLRPGMPPTMMDPFRKRLLVPQAQPPMP 129
+P R G P D P P P
Sbjct: 1019 GAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAP 1051
Score = 32.7 bits (73), Expect = 0.85
Identities = 34/108 (31%), Positives = 40/108 (37%), Gaps = 14/108 (12%)
Query: 5 GAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGPALRGPGPAGGVGGPGAAAFRPMGP 64
G G P +PG A GA P G P RGP G GG P GP
Sbjct: 377 GPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPGG-------PPGP 429
Query: 65 AGPAAQYQRPGM-----SPGNRMPMAGLQVGP-PAGSPFGAAAPLRPG 106
G + + PG + G P+ G+Q P PAG A PG
Sbjct: 430 KGNSGEPGAPGSKGDTGAKGEPGPV-GVQGPPGPAGEEGKRGARGEPG 476
>gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens]
Length = 424
Score = 50.1 bits (118), Expect = 5e-06
Identities = 49/160 (30%), Positives = 54/160 (33%), Gaps = 36/160 (22%)
Query: 7 GGFPLPPLSPGGGAVAAALGAPPPPAGPGMLP-GPALRG---------------PGPAGG 50
G FP P PG PPPP PG GP G P P GG
Sbjct: 241 GSFPPPVPPPGALPPGIPPAMPPPPMPPGAAGHGPPSAGTPGAGHPGHGHSHPHPFPPGG 300
Query: 51 VGGPGAAAFR---------------PMGPAGPAAQYQRPGMSPGNRMPMAGLQVGPPAGS 95
+ PG + + P G G PGM PM GPP GS
Sbjct: 301 MPHPGMSQMQLAHHGPHGLGHPHAGPPGSGGQPPPRPPPGMPHPGPPPMGMPPRGPPFGS 360
Query: 96 PFGAAAPLRP-GM--PPTMMDPFRKRLLVPQAQPPMPAQR 132
P G P+ P GM PP +M P P PP QR
Sbjct: 361 PMGHPGPMPPHGMRGPPPLMPP--HGYTGPPRPPPYGYQR 398
Score = 38.5 bits (88), Expect = 0.015
Identities = 39/147 (26%), Positives = 50/147 (34%), Gaps = 33/147 (22%)
Query: 10 PLPPLSPGGGAVAAALGAPPPPAGPGMLPGPALRGPGPAGGVGGPGAAAFRPMGPAGPAA 69
P PP +P V ++LG+ PP PGM P + P P G PG P P P A
Sbjct: 215 PPPPSAPN--PVVSSLGSGLPP--PGMPPPGSFPPPVPPPGALPPGIPPAMPPPPMPPGA 270
Query: 70 Q------------------YQRPGMSPGNRMPMAGLQ-----------VGPPAGSPFGAA 100
+ P P MP G+ +G P P G+
Sbjct: 271 AGHGPPSAGTPGAGHPGHGHSHPHPFPPGGMPHPGMSQMQLAHHGPHGLGHPHAGPPGSG 330
Query: 101 APLRPGMPPTMMDPFRKRLLVPQAQPP 127
P PP M P + +P PP
Sbjct: 331 GQPPPRPPPGMPHPGPPPMGMPPRGPP 357
>gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]
Length = 1745
Score = 50.1 bits (118), Expect = 5e-06
Identities = 38/103 (36%), Positives = 46/103 (44%), Gaps = 10/103 (9%)
Query: 5 GAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGPALRGP-GPAGGVGGPGAAAFR-PM 62
G GFP P PG G PP G P RGP GPAGG+G PG + P+
Sbjct: 974 GLRGFPGPKGGPGDPGPTGLKGDKGPPGPVGANGSPGERGPLGPAGGIGLPGQSGSEGPV 1033
Query: 63 GPA---GPAAQYQRPGMSPGNRMPMAGLQVGPPAGSPFGAAAP 102
GPA G + PG + + +P +GPP GAA P
Sbjct: 1034 GPAGKKGSRGERGPPGPTGKDGIPGPLGPLGPP-----GAAGP 1071
Score = 47.4 bits (111), Expect = 3e-05
Identities = 45/127 (35%), Positives = 49/127 (38%), Gaps = 19/127 (14%)
Query: 1 MSGR-GAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGP-ALRG----PGPAGGVGGP 54
+ GR GA G PP G A G P P GPG PGP L+G PGP G G P
Sbjct: 951 LEGREGAKGELGPPGPLGKEGPAGLRGFPGPKGGPGD-PGPTGLKGDKGPPGPVGANGSP 1009
Query: 55 GAAAFRPMGPAGPAAQYQRPGMS-------PGNRMPMAGLQVGPPAGSPFGAAAPLRPGM 107
G GP GPA PG S P + G + P G PL P
Sbjct: 1010 G-----ERGPLGPAGGIGLPGQSGSEGPVGPAGKKGSRGERGPPGPTGKDGIPGPLGPLG 1064
Query: 108 PPTMMDP 114
PP P
Sbjct: 1065 PPGAAGP 1071
Score = 45.8 bits (107), Expect = 1e-04
Identities = 50/150 (33%), Positives = 58/150 (38%), Gaps = 23/150 (15%)
Query: 5 GAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGPALRG-PGPAGGVGGPG-AAAFRPM 62
G G P P PG +G PP P GP LPG L+G GP G G G P
Sbjct: 1358 GLRGIPGPVGEPGLLGAPGQMG-PPGPLGPSGLPG--LKGDTGPKGEKGHIGLIGLIGPP 1414
Query: 63 GPAGPAAQYQRPGM--------SPGNRMPMAGL-QVGPPAGSPFGAAAPL----RPGMPP 109
G AG PG+ PG P+ L GPP G A PL G P
Sbjct: 1415 GEAGEKGDQGLPGVQGPPGPKGDPGPPGPIGSLGHPGPP-----GVAGPLGQKGSKGSPG 1469
Query: 110 TMMDPFRKRLLVPQAQPPMPAQRRGLKRRK 139
+M P P PA+ GL+RR+
Sbjct: 1470 SMGPRGDTGPAGPPGPPGAPAELHGLRRRR 1499
Score = 45.4 bits (106), Expect = 1e-04
Identities = 44/125 (35%), Positives = 50/125 (40%), Gaps = 23/125 (18%)
Query: 12 PPLSPGGGAVAAALGAPPPPAGPGMLPGPALRGPGPAGGVGGPGAAAFRPMGPAGPAAQY 71
PP G G PP GP PGP PGP G +G PG P G AGP Q
Sbjct: 1413 PPGEAGEKGDQGLPGVQGPP-GPKGDPGP----PGPIGSLGHPG-----PPGVAGPLGQK 1462
Query: 72 QRPGMSPGNRMPMAGLQVGPPAGSPFGAAAPLRPGMPPTMMDPFRKRLLVPQAQPPMPAQ 131
G SPG+ P GP A P PG P + R+R VP P+P
Sbjct: 1463 GSKG-SPGSMGPRG--DTGP-------AGPPGPPGAPAELHGLRRRRRFVP---VPLPVV 1509
Query: 132 RRGLK 136
GL+
Sbjct: 1510 EGGLE 1514
Score = 42.4 bits (98), Expect = 0.001
Identities = 34/95 (35%), Positives = 39/95 (41%), Gaps = 9/95 (9%)
Query: 4 RGAGGFPLPPLSPGGGAVAAALGAPPPPAGPGM--LPGPALRGPGPAGGVGGPGAAAFRP 61
RG G P P G +G P PP G GP PGP G G PG
Sbjct: 550 RGFDGLPGLPGEKGQRGDFGHVGQPGPPGEDGERGAEGP----PGPTGQAGEPGPRGL-- 603
Query: 62 MGPAGPAAQYQRPGMSPGNRMPMAGLQVGPPAGSP 96
+GP G RPG++ + P A VGPP G P
Sbjct: 604 LGPRGSPGPTGRPGVTGIDGAPGAKGNVGPP-GEP 637
Score = 41.2 bits (95), Expect = 0.002
Identities = 42/126 (33%), Positives = 51/126 (40%), Gaps = 23/126 (18%)
Query: 4 RGAGGFPLP-----PLSPGGGAVAAALGAPPPPAGP-GMLPGPALRG----PGPAGGVGG 53
+G G P P P P G A A PP AG G L P L G PGP G +G
Sbjct: 748 QGKPGAPGPRGEDGPEGPKGQAGQAGEEGPPGSAGEKGKLGVPGLPGYPGRPGPKGSIGF 807
Query: 54 PGAAAFRPMGPAGPAAQYQRPGMS-----PGNR----MPMAGLQVGP--PAGSPFGAAAP 102
PG P+G G + + +PG+ PG+R P A Q GP G P
Sbjct: 808 PGPLG--PIGEKGKSGKTGQPGLEGERGPPGSRGERGQPGATGQPGPKGDVGQDGAPGIP 865
Query: 103 LRPGMP 108
G+P
Sbjct: 866 GEKGLP 871
Score = 40.8 bits (94), Expect = 0.003
Identities = 40/119 (33%), Positives = 45/119 (37%), Gaps = 27/119 (22%)
Query: 9 FPLPPLSPGGGAVAAALGAPPPPAGPGMLPGPALRGPGPAGGVGGPGAAAFRPMGPAG-- 66
F PP +PG V G P PP PG PGP PGPAG G PG R GP G
Sbjct: 390 FEGPPGAPGPQGVVGPSGPPGPPGFPGD-PGP----PGPAGLPGIPGIDGIR--GPPGTV 442
Query: 67 -------PAAQYQRPGMSPGNRMPMAGLQ------VGPP-----AGSPFGAAAPLRPGM 107
++ P +S A LQ GPP G P P PG+
Sbjct: 443 IMMPFQFAGGSFKGPPVSFQQAQAQAVLQQTQLSMKGPPGPVGLTGRPGPVGLPGHPGL 501
Score = 40.8 bits (94), Expect = 0.003
Identities = 34/110 (30%), Positives = 41/110 (37%), Gaps = 12/110 (10%)
Query: 5 GAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGPALRGPGPAGGVGGPGAAAFRPMGP 64
G G P PG V+ G+P PG + G PGP G G PGA P G
Sbjct: 1259 GPTGLPGDLGPPGDPGVSGIDGSPGEKGDPGDVGG-----PGPPGASGEPGAPG--PPGK 1311
Query: 65 AGPAAQYQRPGMSPGNRMPMAGLQVGPPAGSPFGAAAPLRPGMPPTMMDP 114
GP+ R G R G + P P G P+ PP + P
Sbjct: 1312 RGPSGHMGREG-----REGEKGAKGEPGPDGPPGRTGPMGARGPPGRVGP 1356
Score = 40.4 bits (93), Expect = 0.004
Identities = 41/124 (33%), Positives = 46/124 (37%), Gaps = 26/124 (20%)
Query: 4 RGAGGFPLPPLSPGG---------------GAVAAALGAPPPPAGPGMLPGPALRGPGPA 48
RG G P PP + G V +G PP G LPGP PG
Sbjct: 1105 RGPAGHPGPPGADGAQGRRGPPGLFGQKGDDGVRGFVGVIGPPGLQG-LPGP----PGEK 1159
Query: 49 GGVGGPGA----AAFRPMGPAGPAAQYQRPGMSPGNRMPMAGLQVGP--PAGSPFGAAAP 102
G VG G+ A P GP GP PG+ G P A + G AG P AP
Sbjct: 1160 GEVGDVGSMGPHGAPGPRGPQGPTGSEGTPGLPGGVGQPGAVGEKGERGDAGDPGPPGAP 1219
Query: 103 LRPG 106
PG
Sbjct: 1220 GIPG 1223
Score = 38.9 bits (89), Expect = 0.012
Identities = 44/129 (34%), Positives = 54/129 (41%), Gaps = 26/129 (20%)
Query: 26 GAPPPPAGPGMLPGPALRG-PGPAGGVGGPGAAAFRPMGPAGPAAQYQRPGM--SPGNRM 82
G P PP PG P L G G G +G PG P+G GPA PG PG+
Sbjct: 935 GPPGPPGPPGEQGLPGLEGREGAKGELGPPG-----PLGKEGPAGLRGFPGPKGGPGDPG 989
Query: 83 PMAGLQ--VGPPA-----GSPFGAAAPLRP----GMPPTM-----MDPFRKRLLVPQAQP 126
P GL+ GPP GSP G PL P G+P + P K+ + P
Sbjct: 990 P-TGLKGDKGPPGPVGANGSP-GERGPLGPAGGIGLPGQSGSEGPVGPAGKKGSRGERGP 1047
Query: 127 PMPAQRRGL 135
P P + G+
Sbjct: 1048 PGPTGKDGI 1056
Score = 38.5 bits (88), Expect = 0.015
Identities = 42/129 (32%), Positives = 48/129 (37%), Gaps = 19/129 (14%)
Query: 12 PPLSPGGGAVAAALGAPPPPAGPGMLPGPALRG----PGPAGGVGGPGAAAFRPMGPAGP 67
PP S G A G P P G P + G PG G G PG P GP G
Sbjct: 834 PPGSRGERGQPGATGQPGPKGDVGQDGAPGIPGEKGLPGLQGPPGFPG-----PKGPPGH 888
Query: 68 AAQYQRPGMSPGNRMPMAGL-QVGPPAGSPFGAAAPLRPGMPPTMMDPFRKRLLVPQAQP 126
+ RPG PG R + Q GPP G A L P + P +R P
Sbjct: 889 QGKDGRPG-HPGQRGELGFQGQTGPP-----GPAGVLGPQGKTGEVGPLGER---GPPGP 939
Query: 127 PMPAQRRGL 135
P P +GL
Sbjct: 940 PGPPGEQGL 948
Score = 34.7 bits (78), Expect = 0.22
Identities = 37/116 (31%), Positives = 44/116 (37%), Gaps = 23/116 (19%)
Query: 5 GAGGFPLPPLSPGGGAVAAALGA------PPPPAGPGMLPGPALRG-PGPAGGVGGPGAA 57
G G P P PG + A GA P P PG +G PGP G +G P
Sbjct: 605 GPRGSPGPTGRPGVTGIDGAPGAKGNVGPPGEPGPPGQQGNHGSQGLPGPQGLIGTP--- 661
Query: 58 AFRPMGPAGPAAQYQRPGMSPGNRMPMAGLQVGPPAG-----SPFGAAAPLRPGMP 108
G GP PG+ PG+ P+ P G P G+A P PG P
Sbjct: 662 -----GEKGPPGNPGIPGL-PGSDGPLGHPGHEGPTGEKGAQGPPGSAGP--PGYP 709
Score = 33.1 bits (74), Expect = 0.65
Identities = 36/116 (31%), Positives = 41/116 (35%), Gaps = 22/116 (18%)
Query: 7 GGFPLPPLSPGGGAVAAALG-------APPPPAG------PGMLPG-PALRGPGPAGGVG 52
G F PP+S A L PP P G P LPG P L+G A G
Sbjct: 452 GSFKGPPVSFQQAQAQAVLQQTQLSMKGPPGPVGLTGRPGPVGLPGHPGLKGEEGAEGPQ 511
Query: 53 GPGAAAFRPMGPAGPAAQYQRPGMSPGNRMPMAGLQVGPPAGSPFGAAAPLRPGMP 108
GP P GP G + RPG +P GP F PG+P
Sbjct: 512 GPRGLQ-GPHGPPGRVGKMGRPGADGARGLPG---DTGPKGDRGFDGL----PGLP 559
Score = 32.3 bits (72), Expect = 1.1
Identities = 35/117 (29%), Positives = 43/117 (36%), Gaps = 27/117 (23%)
Query: 4 RGAGGFPLPPLSPGGGAVAAALGA---------PPPPAGPGMLPGPALRGPGPAGGVG-- 52
+G G P PGG A+G P PP PG+ PGP G +G
Sbjct: 1180 QGPTGSEGTPGLPGGVGQPGAVGEKGERGDAGDPGPPGAPGI--------PGPKGDIGEK 1231
Query: 53 ---GPGAAAFRPMGPAGPAAQYQRPGMSPGNRMPMAGLQVGPPAGSPFGAAAPLRPG 106
GP AA P G GP + G +P +GPP G P + PG
Sbjct: 1232 GDSGPSGAA-GPPGKKGPPGEDGAKGSVGPTGLPG---DLGPP-GDPGVSGIDGSPG 1283
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 49.7 bits (117), Expect = 7e-06
Identities = 42/104 (40%), Positives = 45/104 (43%), Gaps = 10/104 (9%)
Query: 5 GAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGPALRG-PGPAGGVGGPGAAAFRPMG 63
G G+P P PG G P P PG P G GP+G G PGA P G
Sbjct: 168 GLAGYPGPAGPPGPPGPPGTSGHPGSPGSPGYQGPPGEPGQAGPSGPPGPPGAIG--PSG 225
Query: 64 PAGPAAQYQRPGMSPGNRMPMAGLQVGPPAGSPFGAAAPLRPGM 107
PAG + RPG PG R GL GPP G A P PGM
Sbjct: 226 PAGKDGESGRPG-RPGER----GLP-GPP-GIKGPAGIPGFPGM 262
Score = 48.9 bits (115), Expect = 1e-05
Identities = 41/127 (32%), Positives = 47/127 (37%), Gaps = 12/127 (9%)
Query: 10 PLPPLSP----GGGAVAAALGAPPPPAGPGMLPGPALRG-PGPAGGVGGPGAAAFRPMGP 64
P PP +P G G P PP PG P + G PG G G PG P GP
Sbjct: 89 PQPPTAPTRPPNGQGPQGPKGDPGPPGIPGRNGDPGIPGQPGSPGSPGPPGICESCPTGP 148
Query: 65 AGPAAQYQRPGMSPGNRMPMAGLQVGPPAGSPFGAAAPLRPGMPPTMMDPFRKRLLVPQA 124
+ QY + +G+ VG AG P A P PG P T P Q
Sbjct: 149 QNYSPQYDSYDVK-------SGVAVGGLAGYPGPAGPPGPPGPPGTSGHPGSPGSPGYQG 201
Query: 125 QPPMPAQ 131
P P Q
Sbjct: 202 PPGEPGQ 208
Score = 47.8 bits (112), Expect = 3e-05
Identities = 44/119 (36%), Positives = 48/119 (40%), Gaps = 23/119 (19%)
Query: 4 RGAGGFPLPPLSPGGGAVAAALGAPPP---------PAGPGMLPGPALRG-PGPAGGVGG 53
+G GG P PGG A G P P P GPG P RG PGP G G
Sbjct: 833 KGEGGPPGVAGPPGGSGPA---GPPGPQGVKGERGSPGGPGAAGFPGARGLPGPPGSNGN 889
Query: 54 PG----AAAFRPMGPAGPAAQYQRPGMSPGNRMP-----MAGLQVGPPAGSPFGAAAPL 103
PG + + GP GPA PG SPG P G + P A P GA PL
Sbjct: 890 PGPPGPSGSPGKDGPPGPAGNTGAPG-SPGVSGPKGDAGQPGEKGSPGAQGPPGAPGPL 947
Score = 46.2 bits (108), Expect = 7e-05
Identities = 41/133 (30%), Positives = 48/133 (36%), Gaps = 29/133 (21%)
Query: 5 GAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGPALRGP----------GPAGGVGGP 54
G+ G P SPGG G+P P PG P GP GPAG G P
Sbjct: 1017 GSDGLPGRDGSPGGKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGESGPAGPAGAP 1076
Query: 55 GAAAFR----PMGPAGPAAQYQRPGM--------------SPGNRMPMAGLQVGPPAGSP 96
G A R P GP G + G +PG+ P AG Q + P
Sbjct: 1077 GPAGSRGAPGPQGPRGDKGETGERGAAGIKGHRGFPGNPGAPGSPGP-AGQQGAIGSPGP 1135
Query: 97 FGAAAPLRPGMPP 109
G P+ P PP
Sbjct: 1136 AGPRGPVGPSGPP 1148
Score = 45.8 bits (107), Expect = 1e-04
Identities = 40/117 (34%), Positives = 43/117 (36%), Gaps = 20/117 (17%)
Query: 5 GAGGFPLPPLSPGGGAVAAALGAPPPPAG------------PGMLPGPALR-GPGPAGGV 51
G GG P PG GAP P G PG+ P LR G GP G
Sbjct: 645 GTGGPPGENGKPGEPGPKGDAGAPGAPGGKGDAGAPGERGPPGLAGAPGLRGGAGPPGPE 704
Query: 52 GGPGAAAFRPMGPAGPAAQYQRPGMS--PGNRMPMAGLQVGPPAGSPFGAAAPLRPG 106
GG GAA GP GP PG+ PG R + G P G A PG
Sbjct: 705 GGKGAA-----GPPGPPGAAGTPGLQGMPGERGGLGSPGPKGDKGEPGGPGADGVPG 756
Score = 44.7 bits (104), Expect = 2e-04
Identities = 45/136 (33%), Positives = 50/136 (36%), Gaps = 34/136 (25%)
Query: 4 RGAGGFPLPPLSPGGGAVAAALGAPPPPAGPG------MLPGP-ALRG------------ 44
RG G P P PG G PP P GPG PGP L+G
Sbjct: 596 RGGPGGPGPQGPPGKNGETGPQG-PPGPTGPGGDKGDTGPPGPQGLQGLPGTGGPPGENG 654
Query: 45 ----PGPAGGVGGPGAAAFRPMGPAGPAAQYQRPGM--SPGNR------MPMAGLQVGPP 92
PGP G G PGA + G AG + PG+ +PG R P G P
Sbjct: 655 KPGEPGPKGDAGAPGAPGGK--GDAGAPGERGPPGLAGAPGLRGGAGPPGPEGGKGAAGP 712
Query: 93 AGSPFGAAAPLRPGMP 108
G P A P GMP
Sbjct: 713 PGPPGAAGTPGLQGMP 728
Score = 44.7 bits (104), Expect = 2e-04
Identities = 41/108 (37%), Positives = 46/108 (42%), Gaps = 20/108 (18%)
Query: 4 RGAGGFPLPPLSPGGGAVAAALGAPPP--PAGPGMLPGPALRGPGPAGGVGGPGAAAFRP 61
RG G P P SPG A+G+P P P GP GP PG G G PG P
Sbjct: 1109 RGFPGNPGAPGSPGPAGQQGAIGSPGPAGPRGPVGPSGP----PGKDGTSGHPG-----P 1159
Query: 62 MGPAGPAAQYQRPGM--SPGNRMPMAGLQVGPPAGSPFGAAAPLRPGM 107
+GP GP G SPG+ Q GPP P GA P G+
Sbjct: 1160 IGPPGPRGNRGERGSEGSPGHPG-----QPGPP--GPPGAPGPCCGGV 1200
Score = 44.3 bits (103), Expect = 3e-04
Identities = 39/119 (32%), Positives = 49/119 (41%), Gaps = 16/119 (13%)
Query: 3 GRGAGGFPLPPLSPGGGAVAA------ALGAPPP------PAGPGMLPGPALRGP-GPAG 49
G+GA G P PP + G + LG+P P P GPG P GP GP G
Sbjct: 706 GKGAAGPPGPPGAAGTPGLQGMPGERGGLGSPGPKGDKGEPGGPGADGVPGKDGPRGPTG 765
Query: 50 GVGGPGAAAFRPMGPAGPAAQYQRPGMSPGNRMPMAGLQVGPPAGSPFGAAAPLRPGMP 108
+G PG A G G PG++ P + GPP + F AP + G P
Sbjct: 766 PIGPPGPAG--QPGDKGEGGAPGLPGIAGPRGSPGERGETGPPGPAGF-PGAPGQNGEP 821
Score = 42.4 bits (98), Expect = 0.001
Identities = 38/105 (36%), Positives = 42/105 (40%), Gaps = 8/105 (7%)
Query: 5 GAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGPALRGP-GPAGGVGGPGAAAFRPMG 63
G+ G P PG A A G P P PG+ P +G GPAG G PG R G
Sbjct: 360 GSNGAPGQRGEPGPQGHAGAQGPPGP---PGINGSPGGKGEMGPAGIPGAPGLMGAR--G 414
Query: 64 PAGPAAQYQRPGMSPGNRMPMAGLQVGPPA--GSPFGAAAPLRPG 106
P GPA PG+ G P G P G A P PG
Sbjct: 415 PPGPAGANGAPGLRGGAGEPGKNGAKGEPGPRGERGEAGIPGVPG 459
Score = 42.4 bits (98), Expect = 0.001
Identities = 42/135 (31%), Positives = 47/135 (34%), Gaps = 36/135 (26%)
Query: 3 GRGAGGFPLPPLSPGGGAVAAALGA--------PPPPAGPGMLPGPALRGPGPAGGVGGP 54
G G G P P PG G+ PP P+GP PG + PGP G G P
Sbjct: 532 GPGMRGMPGSPGGPGSDGKPGPPGSQGESGRPGPPGPSGPRGQPG-VMGFPGPKGNDGAP 590
Query: 55 GAAAFR-------------------PMGPAGPAAQYQRPGMSPGNRMPMA--GLQVGPPA 93
G R P GP GP PG G+ P GLQ P
Sbjct: 591 GKNGERGGPGGPGPQGPPGKNGETGPQGPPGPTG----PGGDKGDTGPPGPQGLQGLPGT 646
Query: 94 GSPFGAAAPLRPGMP 108
G P G +PG P
Sbjct: 647 GGPPGENG--KPGEP 659
Score = 42.0 bits (97), Expect = 0.001
Identities = 44/139 (31%), Positives = 51/139 (36%), Gaps = 20/139 (14%)
Query: 4 RGAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGPALRGPGPAGGVGGPGAAAFRPMG 63
RGA G P PGG + G+P P G PGP PG G G PG P G
Sbjct: 518 RGAAGEPGRDGVPGGPGMRGMPGSPGGPGSDGK-PGP----PGSQGESGRPG-----PPG 567
Query: 64 PAGPAAQ---YQRPGMSPGNRMPMAGLQVGPPAG----SPFGAAAPLRPGMPPTMMDPFR 116
P+GP Q PG + P + G P G P G P PP P
Sbjct: 568 PSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGPQGPPGKNGETGPQGPPGPTGPGG 627
Query: 117 KRLLVPQAQPPMPAQRRGL 135
+ PP P +GL
Sbjct: 628 DK---GDTGPPGPQGLQGL 643
Score = 41.2 bits (95), Expect = 0.002
Identities = 47/130 (36%), Positives = 51/130 (39%), Gaps = 30/130 (23%)
Query: 4 RGAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGPALRGP-GP--------------- 47
+G G P PP PG G P P PG PG P GP
Sbjct: 105 QGPKGDPGPPGIPGRNGDPGIPGQPGSPGSPGP-PGICESCPTGPQNYSPQYDSYDVKSG 163
Query: 48 --AGGVGG-PGAAAFRPMGPAGPAAQYQRPGMSPGNRMPMAGLQVGPPAGSPFGAAAPLR 104
GG+ G PG A P GP GP PG SPG+ G Q GPP G P G A P
Sbjct: 164 VAVGGLAGYPGPAG--PPGPPGPPGTSGHPG-SPGS----PGYQ-GPP-GEP-GQAGPSG 213
Query: 105 PGMPPTMMDP 114
P PP + P
Sbjct: 214 PPGPPGAIGP 223
Score = 41.2 bits (95), Expect = 0.002
Identities = 39/112 (34%), Positives = 45/112 (40%), Gaps = 11/112 (9%)
Query: 4 RGAGGFPLPPLSPGGGAVAAALGAPPPPAGPGM--LPG-PALRGP-GPAGGVGGPGAAAF 59
RG G P + G + G P PP PG PG P +G GPAG G GA
Sbjct: 308 RGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPGSPGAKGEVGPAGSPGSNGAPGQ 367
Query: 60 R----PMGPAGPAAQYQRPGM--SPGNRMPMAGLQVGPPAGSPFGAAAPLRP 105
R P G AG PG+ SPG + M + P A GA P P
Sbjct: 368 RGEPGPQGHAGAQGPPGPPGINGSPGGKGEMGPAGI-PGAPGLMGARGPPGP 418
Score = 40.0 bits (92), Expect = 0.005
Identities = 31/100 (31%), Positives = 37/100 (37%), Gaps = 7/100 (7%)
Query: 16 PGGGAVAAALGAPPPPAGPGMLPGPALRGPGPAGGVGGP--GAAAFRPMGPAGPAAQYQR 73
PG A G P G G P +G G GV GP G+ P GP G +
Sbjct: 806 PGPAGFPGAPGQNGEPGGKGERGAPGEKGEGGPPGVAGPPGGSGPAGPPGPQGVKGERGS 865
Query: 74 PGMSPGNRMPMAGLQVGPPA-----GSPFGAAAPLRPGMP 108
PG P A GPP G P + +P + G P
Sbjct: 866 PGGPGAAGFPGARGLPGPPGSNGNPGPPGPSGSPGKDGPP 905
Score = 40.0 bits (92), Expect = 0.005
Identities = 43/119 (36%), Positives = 44/119 (36%), Gaps = 22/119 (18%)
Query: 5 GAGGFPLPPLS---PGGGAVAAA-----LGAPPPPAGPGMLPGPALRGP-------GPAG 49
G GFP P PGG A G PP AGP GPA GP G G
Sbjct: 807 GPAGFPGAPGQNGEPGGKGERGAPGEKGEGGPPGVAGPPGGSGPA--GPPGPQGVKGERG 864
Query: 50 GVGGPGAAAF-RPMGPAGPAAQYQRPGMSPGNRMPMAGLQVGPPAGSPFGAAAPLRPGM 107
GGPGAA F G GP PG PG P P G AP PG+
Sbjct: 865 SPGGPGAAGFPGARGLPGPPGSNGNPG-PPG---PSGSPGKDGPPGPAGNTGAPGSPGV 919
Score = 40.0 bits (92), Expect = 0.005
Identities = 47/152 (30%), Positives = 57/152 (37%), Gaps = 27/152 (17%)
Query: 4 RGAGGFPLPPLSPGGGAVAAALGA-----PPPPAGPGMLPGP-ALRGP------------ 45
+G+ G PP +PG +A GA PP GP PGP ++G
Sbjct: 932 KGSPGAQGPPGAPGPLGIAGITGARGLAGPPGMPGPRGSPGPQGVKGESGKPGANGLSGE 991
Query: 46 -GPAGGVGGPGAAAFRPMGPAGPAAQYQRPGMS--PGNRMPMAGLQVGPPAGSPFGAAAP 102
GP G G PG A G AG + PG PG G GSP AP
Sbjct: 992 RGPPGPQGLPGLA-----GTAGEPGRDGNPGSDGLPGRDGSPGGKGDRGENGSPGAPGAP 1046
Query: 103 LRPGMPPTMMDPFRKRLLVPQAQPPMPAQRRG 134
PG PP + P K ++ P PA G
Sbjct: 1047 GHPG-PPGPVGPAGKSGDRGESGPAGPAGAPG 1077
Score = 38.5 bits (88), Expect = 0.015
Identities = 37/112 (33%), Positives = 40/112 (35%), Gaps = 23/112 (20%)
Query: 13 PLSPGGGAVAAALGAPPPPAGPGMLPGPALRG----PGPAG--GVGGPGAAAFRPMGPAG 66
P +PGG A GAP PG+ P LRG PGP G G GP P G AG
Sbjct: 668 PGAPGGKGDA---GAPGERGPPGLAGAPGLRGGAGPPGPEGGKGAAGPPG----PPGAAG 720
Query: 67 PAAQYQRPGMSPGNRMPMAGLQVGPPAG----------SPFGAAAPLRPGMP 108
PG G P G P G P G P+ P P
Sbjct: 721 TPGLQGMPGERGGLGSPGPKGDKGEPGGPGADGVPGKDGPRGPTGPIGPPGP 772
Score = 37.7 bits (86), Expect = 0.026
Identities = 39/113 (34%), Positives = 41/113 (36%), Gaps = 18/113 (15%)
Query: 5 GAGGFPLPPLSPGGGAVAAALGAPPPPAGPGML--PGP-----ALRGPGPAGGVGGPGAA 57
G GFP SPG G+P PG PGP A PGP G G PG
Sbjct: 339 GTAGFPG---SPGAKGEVGPAGSPGSNGAPGQRGEPGPQGHAGAQGPPGPPGINGSPGGK 395
Query: 58 AFRPMGPAG----PAAQYQRPGMSPGNRMPMAGLQVGPPAGSPFGAAAPLRPG 106
MGPAG P R P GL+ G AG P A PG
Sbjct: 396 G--EMGPAGIPGAPGLMGARGPPGPAGANGAPGLRGG--AGEPGKNGAKGEPG 444
Score = 37.4 bits (85), Expect = 0.034
Identities = 36/85 (42%), Positives = 39/85 (45%), Gaps = 14/85 (16%)
Query: 29 PPPAGPGMLPG----PALRGPGPAGGVGGPGA-AAFRPMGPAGPAAQYQRPGMSPGNRMP 83
P P GP PG P L PG AG G GA + GP GP PG SPG
Sbjct: 296 PGPMGPRGAPGERGRPGL--PGAAGARGNDGARGSDGQPGPPGPPGTAGFPG-SPG---- 348
Query: 84 MAGLQVGPPAGSPFGAAAPLRPGMP 108
A +VG PAGSP AP + G P
Sbjct: 349 -AKGEVG-PAGSPGSNGAPGQRGEP 371
Score = 34.3 bits (77), Expect = 0.29
Identities = 36/108 (33%), Positives = 43/108 (39%), Gaps = 29/108 (26%)
Query: 26 GAPPPPA--GPGMLPG-PALRGP-------GPAGGVGGPGA----------AAFRPMGPA 65
G P PP GP +PG P ++G G G G PG A PMGP
Sbjct: 243 GLPGPPGIKGPAGIPGFPGMKGHRGFDGRNGEKGETGAPGLKGENGLPGENGAPGPMGPR 302
Query: 66 GPAAQYQRPGMSPG-------NRMPMAGLQVGPPAGSPFGAAAPLRPG 106
G + RPG+ PG + + Q GPP G P A P PG
Sbjct: 303 GAPGERGRPGL-PGAAGARGNDGARGSDGQPGPP-GPPGTAGFPGSPG 348
Score = 32.7 bits (73), Expect = 0.85
Identities = 44/153 (28%), Positives = 52/153 (33%), Gaps = 34/153 (22%)
Query: 5 GAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGPALRGPGPA-------GGVGGPGA- 56
GA G P PP G +G P PG++ GP A GG G PG
Sbjct: 378 GAQGPPGPPGINGSPGGKGEMGPAGIPGAPGLMGARGPPGPAGANGAPGLRGGAGEPGKN 437
Query: 57 AAFRPMGPAGPAAQYQRPGM-----------SPG----NRMPMAGLQVGPPAGSPFGAAA 101
A GP G + PG+ SPG N +P A + G P G
Sbjct: 438 GAKGEPGPRGERGEAGIPGVPGAKGEDGKDGSPGEPGANGLPGAAGERGAP-----GFRG 492
Query: 102 PLRPGMPPTMMDPFRKRLLVPQAQPPMPAQRRG 134
P P P P +R P PA RG
Sbjct: 493 PAGPNGIPGEKGPAGER------GAPGPAGPRG 519
Score = 32.7 bits (73), Expect = 0.85
Identities = 18/38 (47%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 26 GAPPPPAGPGMLPGPALRGPGPA--GGVGGPGAAAFRP 61
G P PP PG PGP G G A G+GG A F P
Sbjct: 1182 GQPGPPGPPG-APGPCCGGVGAAAIAGIGGEKAGGFAP 1218
Score = 32.3 bits (72), Expect = 1.1
Identities = 28/73 (38%), Positives = 30/73 (41%), Gaps = 11/73 (15%)
Query: 5 GAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGPALRGPGPAGG----VGGPGAAAFR 60
G G P P PG G+ P PG PGP PGP G GG GAAA
Sbjct: 1152 GTSGHPGPIGPPGPRGNRGERGSEGSPGHPGQ-PGP----PGPPGAPGPCCGGVGAAAIA 1206
Query: 61 PMG--PAGPAAQY 71
+G AG A Y
Sbjct: 1207 GIGGEKAGGFAPY 1219
Score = 31.6 bits (70), Expect = 1.9
Identities = 38/116 (32%), Positives = 43/116 (37%), Gaps = 13/116 (11%)
Query: 5 GAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGPALRGP-GPAGGVGGPGAAAFRPMG 63
G G P SPG G P PG P GP G AG G G A P G
Sbjct: 906 GPAGNTGAPGSPGVSGPKGDAGQPGEKGSPGAQGPPGAPGPLGIAGITGARGLAG--PPG 963
Query: 64 PAGPAAQYQRPGMSPGNRMPMA-GL--QVGPPAGSPFGAAAPLRPGMPPTMMDPFR 116
GP G+ + P A GL + GPP P G PG+ T +P R
Sbjct: 964 MPGPRGSPGPQGVKGESGKPGANGLSGERGPP--GPQGL-----PGLAGTAGEPGR 1012
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein
[Homo sapiens]
Length = 1650
Score = 49.7 bits (117), Expect = 7e-06
Identities = 39/114 (34%), Positives = 46/114 (40%), Gaps = 16/114 (14%)
Query: 5 GAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGPALRG-------PGPAGGVGGPGAA 57
G G P PP +PG A G P PG GP L+G PGPAG G GAA
Sbjct: 878 GTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGSPGERGAA 937
Query: 58 -AFRPMGPAGPAAQYQRPGMSPGNRMPMAGLQVGP--------PAGSPFGAAAP 102
+ P+GP G PG + +P +GP P G P A P
Sbjct: 938 GSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPP 991
Score = 48.1 bits (113), Expect = 2e-05
Identities = 49/162 (30%), Positives = 61/162 (37%), Gaps = 35/162 (21%)
Query: 3 GRGAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGP-ALRG-PGPAGGVGGPGAAAFR 60
G+GA G P G A P PAGP PGP LRG PG G G PGA
Sbjct: 1248 GKGAKGDP-------GAIGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQA 1300
Query: 61 -PMGPAGPAA------------QYQRPGM-----SPGNRMPMAGLQVGPPAGSPF----- 97
P GP GP + PG+ PG + + P GSP
Sbjct: 1301 GPPGPVGPPGLPGLRGDAGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKGEM 1360
Query: 98 ---GAAAPLRPGMPPTMMDPFRKRLLVPQAQPPMPAQRRGLK 136
GA+ P+ PG PP + P + P P +G++
Sbjct: 1361 GIPGASGPIGPGGPPGLPGPAGPKGAKGATGPGGPKGEKGVQ 1402
Score = 44.3 bits (103), Expect = 3e-04
Identities = 55/157 (35%), Positives = 62/157 (39%), Gaps = 35/157 (22%)
Query: 5 GAGGFPLPPLSPGGGAVAAALGA------PPPPAGPGMLPGPA-LRG-------PGPAGG 50
G G P PP PG + G P PP PG GPA LRG PG AGG
Sbjct: 854 GERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPPGAPGK-DGPAGLRGFPGERGLPGTAGG 912
Query: 51 VGGPGAAAFRPMGPAGPAAQYQRPGMSPGNR-MPMAGLQVGPPA-----GSPFGAAAPLR 104
G G P GP GPA SPG R +G +GPP G P A
Sbjct: 913 PGLKGNEG--PSGPPGPAG-------SPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGV 963
Query: 105 PG----MPPTMMDPFRKRLLVP-QAQPPMPAQRRGLK 136
PG + PT D + + +P A PP A G K
Sbjct: 964 PGEKGPIGPTGRDGVQGPVGLPGPAGPPGVAGEDGDK 1000
Score = 40.0 bits (92), Expect = 0.005
Identities = 43/126 (34%), Positives = 48/126 (38%), Gaps = 23/126 (18%)
Query: 4 RGAGGFPLPPLSPGGGAVAAALGAPPPPA-----------GPGMLPGPA----LRGP-GP 47
RG G P P G A G P PP GP LPG + L GP GP
Sbjct: 472 RGFDGLPGLPGEKGHRGDTGAQGLPGPPGEDGERGDDGEIGPRGLPGESGPRGLLGPKGP 531
Query: 48 AGGVGGPGAAAF-RPMGPAGPAAQYQRPGMSPGNRMPMAGLQVGP-PAGS--PFGAAAPL 103
G G PG P GP G PG P + G Q P P G+ P G P
Sbjct: 532 PGIPGPPGVRGMDGPQGPKGSLGPQGEPG--PPGQQGTPGTQGLPGPQGAIGPHGEKGPQ 589
Query: 104 -RPGMP 108
+PG+P
Sbjct: 590 GKPGLP 595
Score = 39.7 bits (91), Expect = 0.007
Identities = 30/78 (38%), Positives = 33/78 (42%), Gaps = 9/78 (11%)
Query: 4 RGAGGFPLPPLSPGGGAVAAALGAPPP--PAGPGMLPGPALRGPGPAGGVGGPGA----- 56
+G G P P SPG GA P P GP LPGPA GP A G GPG
Sbjct: 1342 KGDRGLPGPQGSPGQKGEMGIPGASGPIGPGGPPGLPGPA--GPKGAKGATGPGGPKGEK 1399
Query: 57 AAFRPMGPAGPAAQYQRP 74
P G GP + +P
Sbjct: 1400 GVQGPPGHPGPPGEVIQP 1417
Score = 37.7 bits (86), Expect = 0.026
Identities = 33/108 (30%), Positives = 40/108 (37%), Gaps = 16/108 (14%)
Query: 4 RGAGGFPLPPL---SPGGGAVAAALGAPPPPAGPGMLPGPALRG-PGPAGGVGGPGAAAF 59
+G G P PP G +LG P PG P +G PGP G +G
Sbjct: 529 KGPPGIPGPPGVRGMDGPQGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIG------- 581
Query: 60 RPMGPAGPAAQYQRPGMSPGNRMPMAGLQVGPPA----GSPFGAAAPL 103
P G GP + PGM + P + GPP P G PL
Sbjct: 582 -PHGEKGPQGKPGLPGMPGSDGPPGHPGKEGPPGTKGNQGPSGPQGPL 628
Score = 37.0 bits (84), Expect = 0.045
Identities = 48/153 (31%), Positives = 54/153 (35%), Gaps = 38/153 (24%)
Query: 4 RGAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGPALRG----------PGPAGGVGG 53
+G GFP P G P PP G+ P RG PGP G VG
Sbjct: 796 QGPNGFPGPK------------GPPGPPGKDGLPGHPGQRGEVGFQGKTGPPGPPGVVGP 843
Query: 54 PGAAA-FRPM------GPAGPAAQYQRPGMSPGNRMPMAGLQVGPPAGSPFGAAAPLR-- 104
GAA PM GP GP + PG + + G GPP A LR
Sbjct: 844 QGAAGETGPMGERGHPGPPGPPGEQGLPGTA--GKEGTKG-DPGPPGAPGKDGPAGLRGF 900
Query: 105 ---PGMPPTMMDPFRKRLLVPQAQPPMPAQRRG 134
G+P T P K P PP PA G
Sbjct: 901 PGERGLPGTAGGPGLKGNEGPSG-PPGPAGSPG 932
Score = 36.6 bits (83), Expect = 0.059
Identities = 41/114 (35%), Positives = 44/114 (38%), Gaps = 34/114 (29%)
Query: 11 LPPLSPGGGAVAAALGAPPPPA--GPGML----PGPALRGPGPAGGVGGPGAAAFRPMGP 64
LPPL G PA PGML PGP GPAG +G PG G
Sbjct: 282 LPPLEEAAHGPRGLKGEKGEPAVLEPGMLVEGPPGPE----GPAGLIGPPGI-----QGN 332
Query: 65 AGPAAQYQRPGMSPGNRMPMAGLQVGPP--AGSPFGAAAPLRPGMPPTMMDPFR 116
GP PG R GPP AG P AP PG ++M PFR
Sbjct: 333 PGPVG-------DPGER--------GPPGRAGLPGSDGAPGPPG--TSLMLPFR 369
Score = 33.9 bits (76), Expect = 0.38
Identities = 42/145 (28%), Positives = 50/145 (34%), Gaps = 30/145 (20%)
Query: 5 GAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGPALRGP----GPAGGVGGPGAAAFR 60
GA G PP G G P PG+ P ++GP G G G PG
Sbjct: 1106 GADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGERGEKGESGQPGEPG-- 1163
Query: 61 PMGPAGPAAQYQRPGMSPGNRMPMAGLQVGPPAGSPFGA----------AAPLRPGMP-P 109
P GP GP P +PG + G P G P G P +PG P P
Sbjct: 1164 PPGPKGPTGD-DGPKGNPG-PVGFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGP 1221
Query: 110 TMMDPFRKRLLVPQAQPPMPAQRRG 134
T + PP P +RG
Sbjct: 1222 T-----------GENGPPGPLGKRG 1235
Score = 33.5 bits (75), Expect = 0.50
Identities = 34/92 (36%), Positives = 35/92 (38%), Gaps = 8/92 (8%)
Query: 5 GAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGPALRGPGPAGGVGGPGAAAFRPMGP 64
G G P PP G G P P PG PGP PG G G GA R G
Sbjct: 1157 GQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGD-PGP----PGEGGPRGQDGAKGDR--GE 1209
Query: 65 AGPAAQYQRPGMSPGNRMPMAGLQVGPPAGSP 96
G Q PG + G P L PAGSP
Sbjct: 1210 DGEPGQPGSPGPT-GENGPPGPLGKRGPAGSP 1240
Score = 32.7 bits (73), Expect = 0.85
Identities = 39/142 (27%), Positives = 48/142 (33%), Gaps = 27/142 (19%)
Query: 16 PGGGAVAAALGAPPPPAGPGMLPGPALRG-------PGPAGGVGGPGAAAFRPM------ 62
PG A +G P PG + P RG PG G G PG + P
Sbjct: 315 PGPEGPAGLIGPPGIQGNPGPVGDPGERGPPGRAGLPGSDGAPGPPGTSLMLPFRFGSGG 374
Query: 63 ---GPAGPAAQYQRPGMSPGNRMPMAGLQVGPP-----AGSPFGAAAPLRPGMPPTMMDP 114
GP A + Q + R+ + GPP G P P PG+ D
Sbjct: 375 GDKGPVVAAQEAQAQAILQQARLALR----GPPGPMGYTGRPGPLGQPGSPGLKGESGDL 430
Query: 115 FRKRLLVPQ--AQPPMPAQRRG 134
+ PQ PP A RRG
Sbjct: 431 GPQGPRGPQGLTGPPGKAGRRG 452
Score = 32.3 bits (72), Expect = 1.1
Identities = 38/125 (30%), Positives = 41/125 (32%), Gaps = 25/125 (20%)
Query: 1 MSGRGAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGPAL---------RGP------ 45
M +G G P P PG +LG P P G L RGP
Sbjct: 703 MGEKGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGEKGARGLSGKSGPRGERGPTGPRGQ 762
Query: 46 -GPAGGVGGPGA-AAFRPMGPAGPAAQYQRPGMSPGNRMPMAGLQVGP--PAGSPFGAAA 101
GP G G GA GP GP + PG N P GP P G P
Sbjct: 763 RGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFP------GPKGPPGPPGKDGL 816
Query: 102 PLRPG 106
P PG
Sbjct: 817 PGHPG 821
Score = 32.0 bits (71), Expect = 1.4
Identities = 36/127 (28%), Positives = 41/127 (32%), Gaps = 20/127 (15%)
Query: 4 RGAGGFPLPPLSPGGGAVAAALGAPPPPAGPGML--------PGPALRGPGPAGGVGGPG 55
+G G P P PG G P G PGP PGP G VG PG
Sbjct: 979 QGPVGLPGPAGPPGVAGEDGDKGEVGDPGQKGTKGNKGEHGPPGP----PGPIGPVGQPG 1034
Query: 56 AA-AFRPMGPAGPAAQYQRPG-------MSPGNRMPMAGLQVGPPAGSPFGAAAPLRPGM 107
AA A G GP + G P + + GL G P+ P
Sbjct: 1035 AAGADGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGEKGETGDVGPMGPPG 1094
Query: 108 PPTMMDP 114
PP P
Sbjct: 1095 PPGPRGP 1101
Score = 30.8 bits (68), Expect = 3.2
Identities = 30/81 (37%), Positives = 34/81 (41%), Gaps = 11/81 (13%)
Query: 34 PGMLPGPALRG----PGPAGGVGGPGAAAFRPMGPAGPAAQYQRPGMSPGNRMPMAGLQV 89
PG P +G PG +G + GPG P GPAGP G PG G+Q
Sbjct: 1348 PGPQGSPGQKGEMGIPGASGPI-GPGGPPGLP-GPAGPKGAKGATG--PGGPKGEKGVQ- 1402
Query: 90 GPPA--GSPFGAAAPLRPGMP 108
GPP G P PL MP
Sbjct: 1403 GPPGHPGPPGEVIQPLPIQMP 1423
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein
[Homo sapiens]
Length = 1629
Score = 49.7 bits (117), Expect = 7e-06
Identities = 39/114 (34%), Positives = 46/114 (40%), Gaps = 16/114 (14%)
Query: 5 GAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGPALRG-------PGPAGGVGGPGAA 57
G G P PP +PG A G P PG GP L+G PGPAG G GAA
Sbjct: 857 GTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGSPGERGAA 916
Query: 58 -AFRPMGPAGPAAQYQRPGMSPGNRMPMAGLQVGP--------PAGSPFGAAAP 102
+ P+GP G PG + +P +GP P G P A P
Sbjct: 917 GSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPP 970
Score = 48.1 bits (113), Expect = 2e-05
Identities = 49/162 (30%), Positives = 61/162 (37%), Gaps = 35/162 (21%)
Query: 3 GRGAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGP-ALRG-PGPAGGVGGPGAAAFR 60
G+GA G P G A P PAGP PGP LRG PG G G PGA
Sbjct: 1227 GKGAKGDP-------GAIGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQA 1279
Query: 61 -PMGPAGPAA------------QYQRPGM-----SPGNRMPMAGLQVGPPAGSPF----- 97
P GP GP + PG+ PG + + P GSP
Sbjct: 1280 GPPGPVGPPGLPGLRGDAGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKGEM 1339
Query: 98 ---GAAAPLRPGMPPTMMDPFRKRLLVPQAQPPMPAQRRGLK 136
GA+ P+ PG PP + P + P P +G++
Sbjct: 1340 GIPGASGPIGPGGPPGLPGPAGPKGAKGATGPGGPKGEKGVQ 1381
Score = 44.3 bits (103), Expect = 3e-04
Identities = 55/157 (35%), Positives = 62/157 (39%), Gaps = 35/157 (22%)
Query: 5 GAGGFPLPPLSPGGGAVAAALGA------PPPPAGPGMLPGPA-LRG-------PGPAGG 50
G G P PP PG + G P PP PG GPA LRG PG AGG
Sbjct: 833 GERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPPGAPGK-DGPAGLRGFPGERGLPGTAGG 891
Query: 51 VGGPGAAAFRPMGPAGPAAQYQRPGMSPGNR-MPMAGLQVGPPA-----GSPFGAAAPLR 104
G G P GP GPA SPG R +G +GPP G P A
Sbjct: 892 PGLKGNEG--PSGPPGPAG-------SPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGV 942
Query: 105 PG----MPPTMMDPFRKRLLVP-QAQPPMPAQRRGLK 136
PG + PT D + + +P A PP A G K
Sbjct: 943 PGEKGPIGPTGRDGVQGPVGLPGPAGPPGVAGEDGDK 979
Score = 40.0 bits (92), Expect = 0.005
Identities = 43/126 (34%), Positives = 48/126 (38%), Gaps = 23/126 (18%)
Query: 4 RGAGGFPLPPLSPGGGAVAAALGAPPPPA-----------GPGMLPGPA----LRGP-GP 47
RG G P P G A G P PP GP LPG + L GP GP
Sbjct: 451 RGFDGLPGLPGEKGHRGDTGAQGLPGPPGEDGERGDDGEIGPRGLPGESGPRGLLGPKGP 510
Query: 48 AGGVGGPGAAAF-RPMGPAGPAAQYQRPGMSPGNRMPMAGLQVGP-PAGS--PFGAAAPL 103
G G PG P GP G PG P + G Q P P G+ P G P
Sbjct: 511 PGIPGPPGVRGMDGPQGPKGSLGPQGEPG--PPGQQGTPGTQGLPGPQGAIGPHGEKGPQ 568
Query: 104 -RPGMP 108
+PG+P
Sbjct: 569 GKPGLP 574
Score = 39.7 bits (91), Expect = 0.007
Identities = 30/78 (38%), Positives = 33/78 (42%), Gaps = 9/78 (11%)
Query: 4 RGAGGFPLPPLSPGGGAVAAALGAPPP--PAGPGMLPGPALRGPGPAGGVGGPGA----- 56
+G G P P SPG GA P P GP LPGPA GP A G GPG
Sbjct: 1321 KGDRGLPGPQGSPGQKGEMGIPGASGPIGPGGPPGLPGPA--GPKGAKGATGPGGPKGEK 1378
Query: 57 AAFRPMGPAGPAAQYQRP 74
P G GP + +P
Sbjct: 1379 GVQGPPGHPGPPGEVIQP 1396
Score = 37.7 bits (86), Expect = 0.026
Identities = 33/108 (30%), Positives = 40/108 (37%), Gaps = 16/108 (14%)
Query: 4 RGAGGFPLPPL---SPGGGAVAAALGAPPPPAGPGMLPGPALRG-PGPAGGVGGPGAAAF 59
+G G P PP G +LG P PG P +G PGP G +G
Sbjct: 508 KGPPGIPGPPGVRGMDGPQGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIG------- 560
Query: 60 RPMGPAGPAAQYQRPGMSPGNRMPMAGLQVGPPA----GSPFGAAAPL 103
P G GP + PGM + P + GPP P G PL
Sbjct: 561 -PHGEKGPQGKPGLPGMPGSDGPPGHPGKEGPPGTKGNQGPSGPQGPL 607
Score = 37.0 bits (84), Expect = 0.045
Identities = 48/153 (31%), Positives = 54/153 (35%), Gaps = 38/153 (24%)
Query: 4 RGAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGPALRG----------PGPAGGVGG 53
+G GFP P G P PP G+ P RG PGP G VG
Sbjct: 775 QGPNGFPGPK------------GPPGPPGKDGLPGHPGQRGEVGFQGKTGPPGPPGVVGP 822
Query: 54 PGAAA-FRPM------GPAGPAAQYQRPGMSPGNRMPMAGLQVGPPAGSPFGAAAPLR-- 104
GAA PM GP GP + PG + + G GPP A LR
Sbjct: 823 QGAAGETGPMGERGHPGPPGPPGEQGLPGTA--GKEGTKG-DPGPPGAPGKDGPAGLRGF 879
Query: 105 ---PGMPPTMMDPFRKRLLVPQAQPPMPAQRRG 134
G+P T P K P PP PA G
Sbjct: 880 PGERGLPGTAGGPGLKGNEGPSG-PPGPAGSPG 911
Score = 35.0 bits (79), Expect = 0.17
Identities = 32/82 (39%), Positives = 38/82 (46%), Gaps = 7/82 (8%)
Query: 39 GP-ALRGPGPAGGVGGPGAAAFRPMGPAGPAAQYQRPGMSPGNRMPMAGL-QVGPP--AG 94
GP L+G V PG P GP GPA PG+ GN P+ + GPP AG
Sbjct: 270 GPRGLKGEKGEPAVLEPGMLVEGPPGPEGPAGLIGPPGIQ-GNPGPVGDPGERGPPGRAG 328
Query: 95 SPFGAAAPLRPGMPPTMMDPFR 116
P AP PG ++M PFR
Sbjct: 329 LPGSDGAPGPPG--TSLMLPFR 348
Score = 33.9 bits (76), Expect = 0.38
Identities = 42/145 (28%), Positives = 50/145 (34%), Gaps = 30/145 (20%)
Query: 5 GAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGPALRGP----GPAGGVGGPGAAAFR 60
GA G PP G G P PG+ P ++GP G G G PG
Sbjct: 1085 GADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGERGEKGESGQPGEPG-- 1142
Query: 61 PMGPAGPAAQYQRPGMSPGNRMPMAGLQVGPPAGSPFGA----------AAPLRPGMP-P 109
P GP GP P +PG + G P G P G P +PG P P
Sbjct: 1143 PPGPKGPTGD-DGPKGNPG-PVGFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGP 1200
Query: 110 TMMDPFRKRLLVPQAQPPMPAQRRG 134
T + PP P +RG
Sbjct: 1201 T-----------GENGPPGPLGKRG 1214
Score = 33.5 bits (75), Expect = 0.50
Identities = 34/92 (36%), Positives = 35/92 (38%), Gaps = 8/92 (8%)
Query: 5 GAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGPALRGPGPAGGVGGPGAAAFRPMGP 64
G G P PP G G P P PG PGP PG G G GA R G
Sbjct: 1136 GQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGD-PGP----PGEGGPRGQDGAKGDR--GE 1188
Query: 65 AGPAAQYQRPGMSPGNRMPMAGLQVGPPAGSP 96
G Q PG + G P L PAGSP
Sbjct: 1189 DGEPGQPGSPGPT-GENGPPGPLGKRGPAGSP 1219
Score = 32.7 bits (73), Expect = 0.85
Identities = 39/142 (27%), Positives = 48/142 (33%), Gaps = 27/142 (19%)
Query: 16 PGGGAVAAALGAPPPPAGPGMLPGPALRG-------PGPAGGVGGPGAAAFRPM------ 62
PG A +G P PG + P RG PG G G PG + P
Sbjct: 294 PGPEGPAGLIGPPGIQGNPGPVGDPGERGPPGRAGLPGSDGAPGPPGTSLMLPFRFGSGG 353
Query: 63 ---GPAGPAAQYQRPGMSPGNRMPMAGLQVGPP-----AGSPFGAAAPLRPGMPPTMMDP 114
GP A + Q + R+ + GPP G P P PG+ D
Sbjct: 354 GDKGPVVAAQEAQAQAILQQARLALR----GPPGPMGYTGRPGPLGQPGSPGLKGESGDL 409
Query: 115 FRKRLLVPQ--AQPPMPAQRRG 134
+ PQ PP A RRG
Sbjct: 410 GPQGPRGPQGLTGPPGKAGRRG 431
Score = 32.3 bits (72), Expect = 1.1
Identities = 38/125 (30%), Positives = 41/125 (32%), Gaps = 25/125 (20%)
Query: 1 MSGRGAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGPAL---------RGP------ 45
M +G G P P PG +LG P P G L RGP
Sbjct: 682 MGEKGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGEKGARGLSGKSGPRGERGPTGPRGQ 741
Query: 46 -GPAGGVGGPGA-AAFRPMGPAGPAAQYQRPGMSPGNRMPMAGLQVGP--PAGSPFGAAA 101
GP G G GA GP GP + PG N P GP P G P
Sbjct: 742 RGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFP------GPKGPPGPPGKDGL 795
Query: 102 PLRPG 106
P PG
Sbjct: 796 PGHPG 800
Score = 32.0 bits (71), Expect = 1.4
Identities = 36/127 (28%), Positives = 41/127 (32%), Gaps = 20/127 (15%)
Query: 4 RGAGGFPLPPLSPGGGAVAAALGAPPPPAGPGML--------PGPALRGPGPAGGVGGPG 55
+G G P P PG G P G PGP PGP G VG PG
Sbjct: 958 QGPVGLPGPAGPPGVAGEDGDKGEVGDPGQKGTKGNKGEHGPPGP----PGPIGPVGQPG 1013
Query: 56 AA-AFRPMGPAGPAAQYQRPG-------MSPGNRMPMAGLQVGPPAGSPFGAAAPLRPGM 107
AA A G GP + G P + + GL G P+ P
Sbjct: 1014 AAGADGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGEKGETGDVGPMGPPG 1073
Query: 108 PPTMMDP 114
PP P
Sbjct: 1074 PPGPRGP 1080
Score = 30.8 bits (68), Expect = 3.2
Identities = 30/81 (37%), Positives = 34/81 (41%), Gaps = 11/81 (13%)
Query: 34 PGMLPGPALRG----PGPAGGVGGPGAAAFRPMGPAGPAAQYQRPGMSPGNRMPMAGLQV 89
PG P +G PG +G + GPG P GPAGP G PG G+Q
Sbjct: 1327 PGPQGSPGQKGEMGIPGASGPI-GPGGPPGLP-GPAGPKGAKGATG--PGGPKGEKGVQ- 1381
Query: 90 GPPA--GSPFGAAAPLRPGMP 108
GPP G P PL MP
Sbjct: 1382 GPPGHPGPPGEVIQPLPIQMP 1402
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein [Homo
sapiens]
Length = 1736
Score = 49.7 bits (117), Expect = 7e-06
Identities = 39/114 (34%), Positives = 46/114 (40%), Gaps = 16/114 (14%)
Query: 5 GAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGPALRG-------PGPAGGVGGPGAA 57
G G P PP +PG A G P PG GP L+G PGPAG G GAA
Sbjct: 964 GTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGSPGERGAA 1023
Query: 58 -AFRPMGPAGPAAQYQRPGMSPGNRMPMAGLQVGP--------PAGSPFGAAAP 102
+ P+GP G PG + +P +GP P G P A P
Sbjct: 1024 GSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPP 1077
Score = 48.1 bits (113), Expect = 2e-05
Identities = 49/162 (30%), Positives = 61/162 (37%), Gaps = 35/162 (21%)
Query: 3 GRGAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGP-ALRG-PGPAGGVGGPGAAAFR 60
G+GA G P G A P PAGP PGP LRG PG G G PGA
Sbjct: 1334 GKGAKGDP-------GAIGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQA 1386
Query: 61 -PMGPAGPAA------------QYQRPGM-----SPGNRMPMAGLQVGPPAGSPF----- 97
P GP GP + PG+ PG + + P GSP
Sbjct: 1387 GPPGPVGPPGLPGLRGDAGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKGEM 1446
Query: 98 ---GAAAPLRPGMPPTMMDPFRKRLLVPQAQPPMPAQRRGLK 136
GA+ P+ PG PP + P + P P +G++
Sbjct: 1447 GIPGASGPIGPGGPPGLPGPAGPKGAKGATGPGGPKGEKGVQ 1488
Score = 44.3 bits (103), Expect = 3e-04
Identities = 55/157 (35%), Positives = 62/157 (39%), Gaps = 35/157 (22%)
Query: 5 GAGGFPLPPLSPGGGAVAAALGA------PPPPAGPGMLPGPA-LRG-------PGPAGG 50
G G P PP PG + G P PP PG GPA LRG PG AGG
Sbjct: 940 GERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPPGAPGK-DGPAGLRGFPGERGLPGTAGG 998
Query: 51 VGGPGAAAFRPMGPAGPAAQYQRPGMSPGNR-MPMAGLQVGPPA-----GSPFGAAAPLR 104
G G P GP GPA SPG R +G +GPP G P A
Sbjct: 999 PGLKGNEG--PSGPPGPAG-------SPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGV 1049
Query: 105 PG----MPPTMMDPFRKRLLVP-QAQPPMPAQRRGLK 136
PG + PT D + + +P A PP A G K
Sbjct: 1050 PGEKGPIGPTGRDGVQGPVGLPGPAGPPGVAGEDGDK 1086
Score = 40.0 bits (92), Expect = 0.005
Identities = 43/126 (34%), Positives = 48/126 (38%), Gaps = 23/126 (18%)
Query: 4 RGAGGFPLPPLSPGGGAVAAALGAPPPPA-----------GPGMLPGPA----LRGP-GP 47
RG G P P G A G P PP GP LPG + L GP GP
Sbjct: 558 RGFDGLPGLPGEKGHRGDTGAQGLPGPPGEDGERGDDGEIGPRGLPGESGPRGLLGPKGP 617
Query: 48 AGGVGGPGAAAF-RPMGPAGPAAQYQRPGMSPGNRMPMAGLQVGP-PAGS--PFGAAAPL 103
G G PG P GP G PG P + G Q P P G+ P G P
Sbjct: 618 PGIPGPPGVRGMDGPQGPKGSLGPQGEPG--PPGQQGTPGTQGLPGPQGAIGPHGEKGPQ 675
Query: 104 -RPGMP 108
+PG+P
Sbjct: 676 GKPGLP 681
Score = 39.7 bits (91), Expect = 0.007
Identities = 30/78 (38%), Positives = 33/78 (42%), Gaps = 9/78 (11%)
Query: 4 RGAGGFPLPPLSPGGGAVAAALGAPPP--PAGPGMLPGPALRGPGPAGGVGGPGA----- 56
+G G P P SPG GA P P GP LPGPA GP A G GPG
Sbjct: 1428 KGDRGLPGPQGSPGQKGEMGIPGASGPIGPGGPPGLPGPA--GPKGAKGATGPGGPKGEK 1485
Query: 57 AAFRPMGPAGPAAQYQRP 74
P G GP + +P
Sbjct: 1486 GVQGPPGHPGPPGEVIQP 1503
Score = 37.7 bits (86), Expect = 0.026
Identities = 33/108 (30%), Positives = 40/108 (37%), Gaps = 16/108 (14%)
Query: 4 RGAGGFPLPPL---SPGGGAVAAALGAPPPPAGPGMLPGPALRG-PGPAGGVGGPGAAAF 59
+G G P PP G +LG P PG P +G PGP G +G
Sbjct: 615 KGPPGIPGPPGVRGMDGPQGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIG------- 667
Query: 60 RPMGPAGPAAQYQRPGMSPGNRMPMAGLQVGPPA----GSPFGAAAPL 103
P G GP + PGM + P + GPP P G PL
Sbjct: 668 -PHGEKGPQGKPGLPGMPGSDGPPGHPGKEGPPGTKGNQGPSGPQGPL 714
Score = 37.0 bits (84), Expect = 0.045
Identities = 48/153 (31%), Positives = 54/153 (35%), Gaps = 38/153 (24%)
Query: 4 RGAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGPALRG----------PGPAGGVGG 53
+G GFP P G P PP G+ P RG PGP G VG
Sbjct: 882 QGPNGFPGPK------------GPPGPPGKDGLPGHPGQRGEVGFQGKTGPPGPPGVVGP 929
Query: 54 PGAAA-FRPM------GPAGPAAQYQRPGMSPGNRMPMAGLQVGPPAGSPFGAAAPLR-- 104
GAA PM GP GP + PG + + G GPP A LR
Sbjct: 930 QGAAGETGPMGERGHPGPPGPPGEQGLPGTA--GKEGTKG-DPGPPGAPGKDGPAGLRGF 986
Query: 105 ---PGMPPTMMDPFRKRLLVPQAQPPMPAQRRG 134
G+P T P K P PP PA G
Sbjct: 987 PGERGLPGTAGGPGLKGNEGPSG-PPGPAGSPG 1018
Score = 35.8 bits (81), Expect = 0.100
Identities = 33/87 (37%), Positives = 38/87 (43%), Gaps = 12/87 (13%)
Query: 39 GPALRGPGPAGGVGG------PGAAAFRPMGPAGPAAQYQRPGMSPGNRMPMAGL-QVGP 91
G A GP G G PG P GP GPA PG+ GN P+ + GP
Sbjct: 372 GAAAHGPRGLKGEKGEPAVLEPGMLVEGPPGPEGPAGLIGPPGIQ-GNPGPVGDPGERGP 430
Query: 92 P--AGSPFGAAAPLRPGMPPTMMDPFR 116
P AG P AP PG ++M PFR
Sbjct: 431 PGRAGLPGSDGAPGPPG--TSLMLPFR 455
Score = 33.9 bits (76), Expect = 0.38
Identities = 42/145 (28%), Positives = 50/145 (34%), Gaps = 30/145 (20%)
Query: 5 GAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGPALRGP----GPAGGVGGPGAAAFR 60
GA G PP G G P PG+ P ++GP G G G PG
Sbjct: 1192 GADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGERGEKGESGQPGEPG-- 1249
Query: 61 PMGPAGPAAQYQRPGMSPGNRMPMAGLQVGPPAGSPFGA----------AAPLRPGMP-P 109
P GP GP P +PG + G P G P G P +PG P P
Sbjct: 1250 PPGPKGPTGD-DGPKGNPG-PVGFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGP 1307
Query: 110 TMMDPFRKRLLVPQAQPPMPAQRRG 134
T + PP P +RG
Sbjct: 1308 T-----------GENGPPGPLGKRG 1321
Score = 33.5 bits (75), Expect = 0.50
Identities = 34/92 (36%), Positives = 35/92 (38%), Gaps = 8/92 (8%)
Query: 5 GAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGPALRGPGPAGGVGGPGAAAFRPMGP 64
G G P PP G G P P PG PGP PG G G GA R G
Sbjct: 1243 GQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGD-PGP----PGEGGPRGQDGAKGDR--GE 1295
Query: 65 AGPAAQYQRPGMSPGNRMPMAGLQVGPPAGSP 96
G Q PG + G P L PAGSP
Sbjct: 1296 DGEPGQPGSPGPT-GENGPPGPLGKRGPAGSP 1326
Score = 32.7 bits (73), Expect = 0.85
Identities = 39/142 (27%), Positives = 48/142 (33%), Gaps = 27/142 (19%)
Query: 16 PGGGAVAAALGAPPPPAGPGMLPGPALRG-------PGPAGGVGGPGAAAFRPM------ 62
PG A +G P PG + P RG PG G G PG + P
Sbjct: 401 PGPEGPAGLIGPPGIQGNPGPVGDPGERGPPGRAGLPGSDGAPGPPGTSLMLPFRFGSGG 460
Query: 63 ---GPAGPAAQYQRPGMSPGNRMPMAGLQVGPP-----AGSPFGAAAPLRPGMPPTMMDP 114
GP A + Q + R+ + GPP G P P PG+ D
Sbjct: 461 GDKGPVVAAQEAQAQAILQQARLALR----GPPGPMGYTGRPGPLGQPGSPGLKGESGDL 516
Query: 115 FRKRLLVPQ--AQPPMPAQRRG 134
+ PQ PP A RRG
Sbjct: 517 GPQGPRGPQGLTGPPGKAGRRG 538
Score = 32.3 bits (72), Expect = 1.1
Identities = 38/125 (30%), Positives = 41/125 (32%), Gaps = 25/125 (20%)
Query: 1 MSGRGAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGPAL---------RGP------ 45
M +G G P P PG +LG P P G L RGP
Sbjct: 789 MGEKGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGEKGARGLSGKSGPRGERGPTGPRGQ 848
Query: 46 -GPAGGVGGPGA-AAFRPMGPAGPAAQYQRPGMSPGNRMPMAGLQVGP--PAGSPFGAAA 101
GP G G GA GP GP + PG N P GP P G P
Sbjct: 849 RGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFP------GPKGPPGPPGKDGL 902
Query: 102 PLRPG 106
P PG
Sbjct: 903 PGHPG 907
Score = 32.0 bits (71), Expect = 1.4
Identities = 36/127 (28%), Positives = 41/127 (32%), Gaps = 20/127 (15%)
Query: 4 RGAGGFPLPPLSPGGGAVAAALGAPPPPAGPGML--------PGPALRGPGPAGGVGGPG 55
+G G P P PG G P G PGP PGP G VG PG
Sbjct: 1065 QGPVGLPGPAGPPGVAGEDGDKGEVGDPGQKGTKGNKGEHGPPGP----PGPIGPVGQPG 1120
Query: 56 AA-AFRPMGPAGPAAQYQRPG-------MSPGNRMPMAGLQVGPPAGSPFGAAAPLRPGM 107
AA A G GP + G P + + GL G P+ P
Sbjct: 1121 AAGADGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGEKGETGDVGPMGPPG 1180
Query: 108 PPTMMDP 114
PP P
Sbjct: 1181 PPGPRGP 1187
Score = 30.8 bits (68), Expect = 3.2
Identities = 30/81 (37%), Positives = 34/81 (41%), Gaps = 11/81 (13%)
Query: 34 PGMLPGPALRG----PGPAGGVGGPGAAAFRPMGPAGPAAQYQRPGMSPGNRMPMAGLQV 89
PG P +G PG +G + GPG P GPAGP G PG G+Q
Sbjct: 1434 PGPQGSPGQKGEMGIPGASGPI-GPGGPPGLP-GPAGPKGAKGATG--PGGPKGEKGVQ- 1488
Query: 90 GPPA--GSPFGAAAPLRPGMP 108
GPP G P PL MP
Sbjct: 1489 GPPGHPGPPGEVIQPLPIQMP 1509
>gi|41350201 epsin 1 isoform c [Homo sapiens]
Length = 550
Score = 49.7 bits (117), Expect = 7e-06
Identities = 48/158 (30%), Positives = 60/158 (37%), Gaps = 38/158 (24%)
Query: 2 SGRGAGGFPL-----PPLSPGG-------GAVAAALGAPPPPAGPGMLPGPALRGP---- 45
SG AG L P SPG G++A A+G+PPP A P P P + P
Sbjct: 391 SGSSAGELELLAGEVPARSPGAFDMSGVRGSLAEAVGSPPPAATPTPTP-PTRKTPESFL 449
Query: 46 GPAGGVGGPGAAAFRPMGPAGPAAQYQRPGMSPGNRMPMAGLQVGPPAGSPFGAAAPLR- 104
GP + + RP GP P A+ P +P G GP +PF A P
Sbjct: 450 GPNAALVDLDSLVSRP-GPTPPGAKASNP------FLPGGGPATGPSVTNPFQPAPPATL 502
Query: 105 -------------PGMPPTMMDPFRKRLLVPQAQPPMP 129
PG PPT + P +P PP P
Sbjct: 503 TLNQLRLSPVPPVPGAPPTYISPLGGGPGLPPMMPPGP 540
Score = 35.0 bits (79), Expect = 0.17
Identities = 32/108 (29%), Positives = 41/108 (37%), Gaps = 9/108 (8%)
Query: 10 PLPPLSPGGGAVAAALGAPPPPAGPGMLP--GPALRGPGPAGGVGGPGAAAFRPMGPAGP 67
P P P GG A + A P A P P GP + G P A+ P PA P
Sbjct: 244 PAPTTDPWGG--PAPMAAAVPTAAPTSDPWGGPPVPPAADPWGGPAPTPASGDPWRPAAP 301
Query: 68 AAQYQRPGMSPGNRMPMAGLQVGPPAGSPFGAAAPLRPGMPPTMMDPF 115
A P + P P G P P+G++ P P+ DP+
Sbjct: 302 AG----PSVDPWGGTPAPAAGEG-PTPDPWGSSDGGVPVSGPSASDPW 344
Score = 33.9 bits (76), Expect = 0.38
Identities = 23/60 (38%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Query: 6 AGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGPALRGPGPAGGVGGPGAAAFRPMGPA 65
A G P P +P G +V G P P AG G P P GGV G +A P PA
Sbjct: 291 ASGDPWRPAAPAGPSVDPWGGTPAPAAGEGPTPDP---WGSSDGGVPVSGPSASDPWTPA 347
>gi|194248095 epsin 1 isoform b [Homo sapiens]
Length = 576
Score = 49.7 bits (117), Expect = 7e-06
Identities = 48/158 (30%), Positives = 60/158 (37%), Gaps = 38/158 (24%)
Query: 2 SGRGAGGFPL-----PPLSPGG-------GAVAAALGAPPPPAGPGMLPGPALRGP---- 45
SG AG L P SPG G++A A+G+PPP A P P P + P
Sbjct: 417 SGSSAGELELLAGEVPARSPGAFDMSGVRGSLAEAVGSPPPAATPTPTP-PTRKTPESFL 475
Query: 46 GPAGGVGGPGAAAFRPMGPAGPAAQYQRPGMSPGNRMPMAGLQVGPPAGSPFGAAAPLR- 104
GP + + RP GP P A+ P +P G GP +PF A P
Sbjct: 476 GPNAALVDLDSLVSRP-GPTPPGAKASNP------FLPGGGPATGPSVTNPFQPAPPATL 528
Query: 105 -------------PGMPPTMMDPFRKRLLVPQAQPPMP 129
PG PPT + P +P PP P
Sbjct: 529 TLNQLRLSPVPPVPGAPPTYISPLGGGPGLPPMMPPGP 566
Score = 35.0 bits (79), Expect = 0.17
Identities = 32/108 (29%), Positives = 41/108 (37%), Gaps = 9/108 (8%)
Query: 10 PLPPLSPGGGAVAAALGAPPPPAGPGMLP--GPALRGPGPAGGVGGPGAAAFRPMGPAGP 67
P P P GG A + A P A P P GP + G P A+ P PA P
Sbjct: 269 PAPTTDPWGG--PAPMAAAVPTAAPTSDPWGGPPVPPAADPWGGPAPTPASGDPWRPAAP 326
Query: 68 AAQYQRPGMSPGNRMPMAGLQVGPPAGSPFGAAAPLRPGMPPTMMDPF 115
A P + P P G P P+G++ P P+ DP+
Sbjct: 327 AG----PSVDPWGGTPAPAAGEG-PTPDPWGSSDGGVPVSGPSASDPW 369
Score = 33.9 bits (76), Expect = 0.38
Identities = 23/60 (38%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Query: 6 AGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGPALRGPGPAGGVGGPGAAAFRPMGPA 65
A G P P +P G +V G P P AG G P P GGV G +A P PA
Sbjct: 316 ASGDPWRPAAPAGPSVDPWGGTPAPAAGEGPTPDP---WGSSDGGVPVSGPSASDPWTPA 372
>gi|194272148 epsin 1 isoform a [Homo sapiens]
Length = 662
Score = 49.7 bits (117), Expect = 7e-06
Identities = 48/158 (30%), Positives = 60/158 (37%), Gaps = 38/158 (24%)
Query: 2 SGRGAGGFPL-----PPLSPGG-------GAVAAALGAPPPPAGPGMLPGPALRGP---- 45
SG AG L P SPG G++A A+G+PPP A P P P + P
Sbjct: 503 SGSSAGELELLAGEVPARSPGAFDMSGVRGSLAEAVGSPPPAATPTPTP-PTRKTPESFL 561
Query: 46 GPAGGVGGPGAAAFRPMGPAGPAAQYQRPGMSPGNRMPMAGLQVGPPAGSPFGAAAPLR- 104
GP + + RP GP P A+ P +P G GP +PF A P
Sbjct: 562 GPNAALVDLDSLVSRP-GPTPPGAKASNP------FLPGGGPATGPSVTNPFQPAPPATL 614
Query: 105 -------------PGMPPTMMDPFRKRLLVPQAQPPMP 129
PG PPT + P +P PP P
Sbjct: 615 TLNQLRLSPVPPVPGAPPTYISPLGGGPGLPPMMPPGP 652
Score = 35.0 bits (79), Expect = 0.17
Identities = 32/108 (29%), Positives = 41/108 (37%), Gaps = 9/108 (8%)
Query: 10 PLPPLSPGGGAVAAALGAPPPPAGPGMLP--GPALRGPGPAGGVGGPGAAAFRPMGPAGP 67
P P P GG A + A P A P P GP + G P A+ P PA P
Sbjct: 355 PAPTTDPWGG--PAPMAAAVPTAAPTSDPWGGPPVPPAADPWGGPAPTPASGDPWRPAAP 412
Query: 68 AAQYQRPGMSPGNRMPMAGLQVGPPAGSPFGAAAPLRPGMPPTMMDPF 115
A P + P P G P P+G++ P P+ DP+
Sbjct: 413 AG----PSVDPWGGTPAPAAGEG-PTPDPWGSSDGGVPVSGPSASDPW 455
Score = 33.9 bits (76), Expect = 0.38
Identities = 23/60 (38%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Query: 6 AGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGPALRGPGPAGGVGGPGAAAFRPMGPA 65
A G P P +P G +V G P P AG G P P GGV G +A P PA
Sbjct: 402 ASGDPWRPAAPAGPSVDPWGGTPAPAAGEGPTPDP---WGSSDGGVPVSGPSASDPWTPA 458
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.137 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,804,465
Number of Sequences: 37866
Number of extensions: 1664429
Number of successful extensions: 20215
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 279
Number of HSP's successfully gapped in prelim test: 1198
Number of HSP's that attempted gapping in prelim test: 10098
Number of HSP's gapped (non-prelim): 6440
length of query: 531
length of database: 18,247,518
effective HSP length: 107
effective length of query: 424
effective length of database: 14,195,856
effective search space: 6019042944
effective search space used: 6019042944
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.