Guide to the Human Genome
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Name: SMARCD3 Sequence: fasta or formatted (470aa) NCBI GI: 51477704
Description:

SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 isoform 1

Referenced in:

Nonhistone Chromosomal Proteins

Other entries for this name:
alt mRNA [470aa] SWI/SNF related, matrix associated, actin dependent regulator of ...
alt prot [483aa] SWI/SNF related, matrix associated, actin dependent regulator of ...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.2         29           2
 C cysteine            0.9          4           1
 D aspartate           6.6         31           2
 E glutamate           5.5         26           3
 F phenylalanine       3.2         15           2
 G glycine             4.5         21           1
 H histidine           1.9          9           1
 I isoleucine          4.5         21           1
 K lysine              6.6         31           2
 L leucine             9.6         45           3
 M methionine          3.0         14           1
 N asparagine          2.1         10           1
 P proline             8.9         42           3
 Q glutamine           8.3         39           2
 R arginine            8.1         38           2
 S serine              7.7         36           2
 T threonine           3.8         18           2
 V valine              5.1         24           2
 W tryptophan          0.9          4           1
 Y tyrosine            2.8         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   SWI/SNF related, matrix associated, actin dependent ... 
SMARCD3               1.000   SWI/SNF related, matrix associated, actin dependent ...
SMARCD3               0.971   SWI/SNF related, matrix associated, actin dependent ...
SMARCD1               0.733   SWI/SNF-related matrix-associated actin-dependent r...
SMARCD2               0.702   SWI/SNF-related matrix-associated actin-dependent r...
SMARCD2               0.700   SWI/SNF-related matrix-associated actin-dependent r...
SMARCD1               0.644   SWI/SNF-related matrix-associated actin-dependent r...
YLPM1                 0.020   YLP motif containing 1 
COL27A1               0.020   collagen, type XXVII, alpha 1 
RAPH1                 0.017   Ras association and pleckstrin homology domains 1 is...
MED15                 0.016   mediator complex subunit 15 isoform a 
MED15                 0.016   mediator complex subunit 15 isoform b 
SCARA3                0.016   scavenger receptor class A, member 3 isoform 1 [Homo...
ZC3H18                0.016   zinc finger CCCH-type containing 18 
WBP11                 0.016   WW domain binding protein 11 
COL8A2                0.015   collagen, type VIII, alpha 2 
TACC2                 0.015   transforming, acidic coiled-coil containing protein...
ZNF207                0.015   zinc finger protein 207 isoform a 
OGFR                  0.015   opioid growth factor receptor 
VASP                  0.015   vasodilator-stimulated phosphoprotein 
TAF4                  0.015   TBP-associated factor 4 
MIXL1                 0.015   Mix-like homeobox protein 1 
LOC645249             0.014   PREDICTED: hypothetical protein 
LOC645249             0.014   PREDICTED: hypothetical protein 
LOC645249             0.014   PREDICTED: hypothetical protein 
PRB1                  0.014   proline-rich protein BstNI subfamily 1 isoform 1 pre...
LOC389333             0.014   hypothetical protein LOC389333 
CUX1                  0.014   cut-like homeobox 1 isoform a 
FLJ37078              0.014   hypothetical protein LOC222183 
PRB2                  0.014   proline-rich protein BstNI subfamily 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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