Guide to the Human Genome
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Name: FOXI3 Sequence: fasta or formatted (420aa) NCBI GI: 208431824
Description:

forkhead box I3

Referenced in:

FOX Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.1         55           8
 C cysteine            1.2          5           1
 D aspartate           2.6         11           2
 E glutamate           3.8         16           3
 F phenylalanine       4.0         17           2
 G glycine             9.5         40           2
 H histidine           1.2          5           1
 I isoleucine          1.7          7           1
 K lysine              2.9         12           2
 L leucine             7.1         30           2
 M methionine          1.9          8           1
 N asparagine          3.8         16           1
 P proline            13.3         56           7
 Q glutamine           3.3         14           1
 R arginine            4.3         18           2
 S serine             14.8         62           3
 T threonine           4.3         18           1
 V valine              2.9         12           1
 W tryptophan          1.0          4           1
 Y tyrosine            3.3         14           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   forkhead box I3 
FOXI1                 0.309   forkhead box I1 isoform a 
FOXI2                 0.263   forkhead box I2 
FOXI1                 0.182   forkhead box I1 isoform b 
FOXG1                 0.178   forkhead box G1 
FOXC1                 0.169   forkhead box C1 
FOXC2                 0.162   forkhead box C2 
FOXL1                 0.162   forkhead box L1 
FOXD1                 0.158   forkhead box D1 
FOXE3                 0.156   forkhead box E3 
FOXD3                 0.154   forkhead box D3 
FOXA1                 0.152   forkhead box A1 
FOXD2                 0.150   forkhead box D2 
FOXA3                 0.149   forkhead box A3 
FOXS1                 0.149   forkhead box S1 
FOXF2                 0.148   forkhead box F2 
FOXE1                 0.148   forkhead box E1 
FOXL2                 0.144   forkhead box L2 
FOXA2                 0.144   forkhead box A2 isoform 2 
FOXA2                 0.144   forkhead box A2 isoform 1 
FOXD4L3               0.140   forkhead box D4-like 3 
FOXD4L2               0.140   forkhead box D4-like 2 
FOXD4                 0.140   forkhead box D4 
FOXD4L5               0.140   forkhead box D4-like 5 
FOXD4L6               0.140   forkhead box D4-like 6 
FOXD4L4               0.140   forkhead box D4-like 4 
FOXD4L1               0.138   forkhead box D4-like 1 
LOC651986             0.137   PREDICTED: similar to forkhead box L2 
FOXB1                 0.133   forkhead box B1 
FOXF1                 0.133   forkhead box F1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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