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Search of human proteins with 14702182
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|14702182 linker for activation of T cells family member 2
[Homo sapiens]
(243 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|118640875 linker for activation of T cells family member 2 [H... 498 e-141
gi|14702182 linker for activation of T cells family member 2 [Ho... 498 e-141
gi|14702184 linker for activation of T cells family member 2 [Ho... 498 e-141
gi|91105174 CD19 antigen [Homo sapiens] 35 0.059
gi|118601081 heterogeneous nuclear ribonucleoprotein U-like 2 [H... 33 0.22
gi|146219841 PNMA-like 2 [Homo sapiens] 32 0.38
gi|38176300 nestin [Homo sapiens] 32 0.50
gi|21464115 methyl-CpG binding domain protein 1 isoform 2 [Homo ... 32 0.50
gi|48255891 protein kinase C substrate 80K-H isoform 2 [Homo sap... 32 0.65
gi|9256586 protocadherin alpha 3 isoform 1 precursor [Homo sapiens] 31 0.85
gi|5032033 RNA binding motif protein 6 [Homo sapiens] 31 0.85
gi|14589860 aspartate beta-hydroxylase isoform c [Homo sapiens] 30 1.5
gi|14589864 aspartate beta-hydroxylase isoform b [Homo sapiens] 30 1.5
gi|14589866 aspartate beta-hydroxylase isoform a [Homo sapiens] 30 1.5
gi|21264339 SRY (sex determining region Y)-box 12 [Homo sapiens] 30 1.5
gi|24497501 forkhead box A1 [Homo sapiens] 30 1.9
gi|50233814 zinc finger CCCH-type containing 14 isoform 3 [Homo ... 30 1.9
gi|231570186 zinc finger CCCH-type containing 14 isoform 6 [Homo... 30 1.9
gi|231570121 zinc finger CCCH-type containing 14 isoform 5 [Homo... 30 1.9
gi|50233812 zinc finger CCCH-type containing 14 isoform 2 [Homo ... 30 1.9
gi|40804742 zinc finger CCCH-type containing 14 isoform 1 [Homo ... 30 1.9
gi|34452709 bromodomain containing 8 isoform 3 [Homo sapiens] 30 1.9
gi|34452707 bromodomain containing 8 isoform 2 [Homo sapiens] 30 1.9
gi|34452705 bromodomain containing 8 isoform 1 [Homo sapiens] 30 1.9
gi|23503317 coiled-coil domain containing 96 [Homo sapiens] 30 1.9
gi|118600969 C-type lectin domain family 17, member A [Homo sapi... 30 2.5
gi|7710143 methyl-CpG binding domain protein 1 isoform 4 [Homo s... 30 2.5
gi|21464119 methyl-CpG binding domain protein 1 isoform PCM1 [Ho... 30 2.5
gi|21464117 methyl-CpG binding domain protein 1 isoform 1 [Homo ... 30 2.5
gi|156105673 methyl-CpG binding domain protein 1 isoform 3 [Homo... 30 2.5
>gi|118640875 linker for activation of T cells family member 2 [Homo
sapiens]
Length = 243
Score = 498 bits (1281), Expect = e-141
Identities = 243/243 (100%), Positives = 243/243 (100%)
Query: 1 MSSGTELLWPGAALLVLLGVAASLCVRCSRPGAKRSEKIYQQRSLREDQQSFTGSRTYSL 60
MSSGTELLWPGAALLVLLGVAASLCVRCSRPGAKRSEKIYQQRSLREDQQSFTGSRTYSL
Sbjct: 1 MSSGTELLWPGAALLVLLGVAASLCVRCSRPGAKRSEKIYQQRSLREDQQSFTGSRTYSL 60
Query: 61 VGQAWPGPLADMAPTRKDKLLQFYPSLEDPASSRYQNFSKGSRHGSEEAYIDPIAMEYYN 120
VGQAWPGPLADMAPTRKDKLLQFYPSLEDPASSRYQNFSKGSRHGSEEAYIDPIAMEYYN
Sbjct: 61 VGQAWPGPLADMAPTRKDKLLQFYPSLEDPASSRYQNFSKGSRHGSEEAYIDPIAMEYYN 120
Query: 121 WGRFSKPPEDDDANSYENVLICKQKTTETGAQQEGIGGLCRGDLSLSLALKTGPTSGLCP 180
WGRFSKPPEDDDANSYENVLICKQKTTETGAQQEGIGGLCRGDLSLSLALKTGPTSGLCP
Sbjct: 121 WGRFSKPPEDDDANSYENVLICKQKTTETGAQQEGIGGLCRGDLSLSLALKTGPTSGLCP 180
Query: 181 SASPEEDEESEDYQNSASIHQWRESRKVMGQLQREASPGPVGSPDEEDGEPDYVNGEVAA 240
SASPEEDEESEDYQNSASIHQWRESRKVMGQLQREASPGPVGSPDEEDGEPDYVNGEVAA
Sbjct: 181 SASPEEDEESEDYQNSASIHQWRESRKVMGQLQREASPGPVGSPDEEDGEPDYVNGEVAA 240
Query: 241 TEA 243
TEA
Sbjct: 241 TEA 243
>gi|14702182 linker for activation of T cells family member 2 [Homo
sapiens]
Length = 243
Score = 498 bits (1281), Expect = e-141
Identities = 243/243 (100%), Positives = 243/243 (100%)
Query: 1 MSSGTELLWPGAALLVLLGVAASLCVRCSRPGAKRSEKIYQQRSLREDQQSFTGSRTYSL 60
MSSGTELLWPGAALLVLLGVAASLCVRCSRPGAKRSEKIYQQRSLREDQQSFTGSRTYSL
Sbjct: 1 MSSGTELLWPGAALLVLLGVAASLCVRCSRPGAKRSEKIYQQRSLREDQQSFTGSRTYSL 60
Query: 61 VGQAWPGPLADMAPTRKDKLLQFYPSLEDPASSRYQNFSKGSRHGSEEAYIDPIAMEYYN 120
VGQAWPGPLADMAPTRKDKLLQFYPSLEDPASSRYQNFSKGSRHGSEEAYIDPIAMEYYN
Sbjct: 61 VGQAWPGPLADMAPTRKDKLLQFYPSLEDPASSRYQNFSKGSRHGSEEAYIDPIAMEYYN 120
Query: 121 WGRFSKPPEDDDANSYENVLICKQKTTETGAQQEGIGGLCRGDLSLSLALKTGPTSGLCP 180
WGRFSKPPEDDDANSYENVLICKQKTTETGAQQEGIGGLCRGDLSLSLALKTGPTSGLCP
Sbjct: 121 WGRFSKPPEDDDANSYENVLICKQKTTETGAQQEGIGGLCRGDLSLSLALKTGPTSGLCP 180
Query: 181 SASPEEDEESEDYQNSASIHQWRESRKVMGQLQREASPGPVGSPDEEDGEPDYVNGEVAA 240
SASPEEDEESEDYQNSASIHQWRESRKVMGQLQREASPGPVGSPDEEDGEPDYVNGEVAA
Sbjct: 181 SASPEEDEESEDYQNSASIHQWRESRKVMGQLQREASPGPVGSPDEEDGEPDYVNGEVAA 240
Query: 241 TEA 243
TEA
Sbjct: 241 TEA 243
>gi|14702184 linker for activation of T cells family member 2 [Homo
sapiens]
Length = 243
Score = 498 bits (1281), Expect = e-141
Identities = 243/243 (100%), Positives = 243/243 (100%)
Query: 1 MSSGTELLWPGAALLVLLGVAASLCVRCSRPGAKRSEKIYQQRSLREDQQSFTGSRTYSL 60
MSSGTELLWPGAALLVLLGVAASLCVRCSRPGAKRSEKIYQQRSLREDQQSFTGSRTYSL
Sbjct: 1 MSSGTELLWPGAALLVLLGVAASLCVRCSRPGAKRSEKIYQQRSLREDQQSFTGSRTYSL 60
Query: 61 VGQAWPGPLADMAPTRKDKLLQFYPSLEDPASSRYQNFSKGSRHGSEEAYIDPIAMEYYN 120
VGQAWPGPLADMAPTRKDKLLQFYPSLEDPASSRYQNFSKGSRHGSEEAYIDPIAMEYYN
Sbjct: 61 VGQAWPGPLADMAPTRKDKLLQFYPSLEDPASSRYQNFSKGSRHGSEEAYIDPIAMEYYN 120
Query: 121 WGRFSKPPEDDDANSYENVLICKQKTTETGAQQEGIGGLCRGDLSLSLALKTGPTSGLCP 180
WGRFSKPPEDDDANSYENVLICKQKTTETGAQQEGIGGLCRGDLSLSLALKTGPTSGLCP
Sbjct: 121 WGRFSKPPEDDDANSYENVLICKQKTTETGAQQEGIGGLCRGDLSLSLALKTGPTSGLCP 180
Query: 181 SASPEEDEESEDYQNSASIHQWRESRKVMGQLQREASPGPVGSPDEEDGEPDYVNGEVAA 240
SASPEEDEESEDYQNSASIHQWRESRKVMGQLQREASPGPVGSPDEEDGEPDYVNGEVAA
Sbjct: 181 SASPEEDEESEDYQNSASIHQWRESRKVMGQLQREASPGPVGSPDEEDGEPDYVNGEVAA 240
Query: 241 TEA 243
TEA
Sbjct: 241 TEA 243
>gi|91105174 CD19 antigen [Homo sapiens]
Length = 556
Score = 35.0 bits (79), Expect = 0.059
Identities = 32/121 (26%), Positives = 50/121 (41%), Gaps = 18/121 (14%)
Query: 123 RFSKPPEDDDANSYENVLICKQKTTETGAQQE---GIGGLC------RGDLSLSLALKTG 173
+ + PP N Y NVL T+ G Q G+GG D+ AL +
Sbjct: 335 KVTPPPGSGPQNQYGNVLSLPTPTSGLGRAQRWAAGLGGTAPSYGNPSSDVQADGALGSR 394
Query: 174 PTSGLCPSAS-------PEEDEESEDYQNSASIHQWRESRKVMGQLQREASPGPVGSPDE 226
G+ P P+ +E+SE Y+N +++ Q + S+ G E P+G DE
Sbjct: 395 SPPGVGPEEEEGEGYEEPDSEEDSEFYENDSNLGQDQLSQDGSGYENPEDE--PLGPEDE 452
Query: 227 E 227
+
Sbjct: 453 D 453
>gi|118601081 heterogeneous nuclear ribonucleoprotein U-like 2 [Homo
sapiens]
Length = 747
Score = 33.1 bits (74), Expect = 0.22
Identities = 33/134 (24%), Positives = 47/134 (35%), Gaps = 9/134 (6%)
Query: 111 IDPIAMEYYNWGRFSKPPEDDDANSYENVLICKQKTTETGAQQEGIGGLCRGDLSLSLAL 170
+ + E G S+ + D A + L + E G G GG C+ + A
Sbjct: 8 VTELRSELQRRGLDSRGLKVDLAQRLQEALDAEMLEDEAGGGGAGPGGACKAEPRPVAA- 66
Query: 171 KTGPTSGLCPSASPEEDEESEDYQNSASIHQWRES---RKVMGQLQREASPGPVGSPDEE 227
SG P EEDEE E+ A + E + +GQ + P + E
Sbjct: 67 -----SGGGPGGDEEEDEEEEEEDEEALLEDEDEEPPPAQALGQAAQPPPEPPEAAAMEA 121
Query: 228 DGEPDYVNGEVAAT 241
EPD AT
Sbjct: 122 AAEPDASEKPAEAT 135
>gi|146219841 PNMA-like 2 [Homo sapiens]
Length = 635
Score = 32.3 bits (72), Expect = 0.38
Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 7/76 (9%)
Query: 161 RGDLSLSLAL-----KTGPTSGLCPSASPEEDEESEDYQNSASIHQWRESRKVMGQLQRE 215
+G L LAL G G ++ + +EESED ++ AS + R SRK + R
Sbjct: 481 KGKLGEVLALLAARENMGSNEGSEEASDEQSEEESEDTESEASEPEDRASRKPRAKRART 540
Query: 216 ASPG--PVGSPDEEDG 229
A G P G+P G
Sbjct: 541 APRGLTPAGAPPTASG 556
>gi|38176300 nestin [Homo sapiens]
Length = 1621
Score = 32.0 bits (71), Expect = 0.50
Identities = 12/44 (27%), Positives = 26/44 (59%)
Query: 187 DEESEDYQNSASIHQWRESRKVMGQLQREASPGPVGSPDEEDGE 230
+EE ++ SA + +W ++ + +L +E+ PG G +E++ E
Sbjct: 936 EEEGQELPQSADVQRWEDTVEKDQELAQESPPGMAGVENEDEAE 979
>gi|21464115 methyl-CpG binding domain protein 1 isoform 2 [Homo
sapiens]
Length = 586
Score = 32.0 bits (71), Expect = 0.50
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 7/81 (8%)
Query: 24 LCVRCSRPGAKRSEKIYQQRSLREDQQSFTGSRTYSLVGQAWPG--PLADMAPTRKDKLL 81
+C+R RPG +R K Q+R LR G + + PG PL P++ +
Sbjct: 242 ICLRPPRPGLRRQWKCVQRRCLRGKHARRKGGCDSKMAARRRPGAQPLPPPPPSQSPE-- 299
Query: 82 QFYPSLEDPASSRYQNFSKGS 102
P+ P ++R QN G+
Sbjct: 300 ---PTEPQPYTNRRQNRKCGA 317
>gi|48255891 protein kinase C substrate 80K-H isoform 2 [Homo
sapiens]
Length = 525
Score = 31.6 bits (70), Expect = 0.65
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 181 SASPEEDEESEDYQNSASIHQWRESRKVMGQLQREASPGPVGSPDEEDGEPDY 233
S + EE+EE E+ + A + E +V G+ + ASP EED P Y
Sbjct: 310 SPTEEEEEEEEEEEEEAEEEEEEEDSEVQGEQPKPASPA------EEDKMPPY 356
>gi|9256586 protocadherin alpha 3 isoform 1 precursor [Homo sapiens]
Length = 950
Score = 31.2 bits (69), Expect = 0.85
Identities = 26/115 (22%), Positives = 41/115 (35%), Gaps = 5/115 (4%)
Query: 123 RFSKPPEDDDANSYENVLICKQKTTETGAQQEGIGGLCRGD-LSLSLALKTGPTSGLCPS 181
R S PP + D + L+C Q+ +C G+ L + + P+ CP
Sbjct: 722 RCSAPPTEGDCGPGKPTLVCSSAVGSWSYSQQRQQRVCSGEGLPKTDLMAFSPSLPPCPI 781
Query: 182 ASPEEDEESEDYQNSASIHQ----WRESRKVMGQLQREASPGPVGSPDEEDGEPD 232
+ E+++ D SA Q WR S + + G G PD
Sbjct: 782 SRDREEKQDVDVDLSAKPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPD 836
>gi|5032033 RNA binding motif protein 6 [Homo sapiens]
Length = 1123
Score = 31.2 bits (69), Expect = 0.85
Identities = 26/86 (30%), Positives = 36/86 (41%), Gaps = 3/86 (3%)
Query: 142 CKQKTTETGAQQEGIGGLCRGDLSLSLALKTGPTSGLCPSASPEEDEESEDYQNSASIHQ 201
CK T A+QE I S+ L+ P L P+ E + E+ Q S HQ
Sbjct: 559 CKNPREVTEAKQELITYPQPQKTSIPAPLEKQPNQPLRPADKEPEPRKREEGQESRLGHQ 618
Query: 202 WRESRKVMGQLQREASPGPVGSPDEE 227
RE+ + + +RE GP D E
Sbjct: 619 KREAERYLPPSRRE---GPTFRRDRE 641
>gi|14589860 aspartate beta-hydroxylase isoform c [Homo sapiens]
Length = 313
Score = 30.4 bits (67), Expect = 1.5
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 172 TGPTSGLCPSASPEEDEESEDYQNSASIHQWRESRKVMGQ-LQREASPGPVGSPDEEDGE 230
T P + A P+ E+ Q + +H+ + V G+ LQ+E GP G P +ED E
Sbjct: 128 TEPEEQVPVEAEPQNIEDEAKEQIQSLLHEMVHAEHVEGEDLQQE--DGPTGEPQQEDDE 185
>gi|14589864 aspartate beta-hydroxylase isoform b [Homo sapiens]
Length = 299
Score = 30.4 bits (67), Expect = 1.5
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 172 TGPTSGLCPSASPEEDEESEDYQNSASIHQWRESRKVMGQ-LQREASPGPVGSPDEEDGE 230
T P + A P+ E+ Q + +H+ + V G+ LQ+E GP G P +ED E
Sbjct: 114 TEPEEQVPVEAEPQNIEDEAKEQIQSLLHEMVHAEHVEGEDLQQE--DGPTGEPQQEDDE 171
>gi|14589866 aspartate beta-hydroxylase isoform a [Homo sapiens]
Length = 758
Score = 30.4 bits (67), Expect = 1.5
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 172 TGPTSGLCPSASPEEDEESEDYQNSASIHQWRESRKVMGQ-LQREASPGPVGSPDEEDGE 230
T P + A P+ E+ Q + +H+ + V G+ LQ+E GP G P +ED E
Sbjct: 128 TEPEEQVPVEAEPQNIEDEAKEQIQSLLHEMVHAEHVEGEDLQQE--DGPTGEPQQEDDE 185
>gi|21264339 SRY (sex determining region Y)-box 12 [Homo sapiens]
Length = 315
Score = 30.4 bits (67), Expect = 1.5
Identities = 30/106 (28%), Positives = 44/106 (41%), Gaps = 14/106 (13%)
Query: 128 PEDDDANSYENVLICKQKTTETGAQQ----EGIGGLCRGDLSLSLALK-TGPTSGLCPSA 182
PEDDD + E +L + + ET ++ G RG + G + S
Sbjct: 162 PEDDDEDDDEELL--EVRLVETPGRELWRMVPAGRAARGQAERAQGPSGEGAAAAAAASP 219
Query: 183 SPEEDEESEDYQNSASIHQWRESRKV------MGQLQREASPGPVG 222
+P EDEE E+ + A+ + E V +G L R PGP G
Sbjct: 220 TPSEDEEPEEEEEEAAAAEEGEEETVASGEESLGFLSR-LPPGPAG 264
>gi|24497501 forkhead box A1 [Homo sapiens]
Length = 472
Score = 30.0 bits (66), Expect = 1.9
Identities = 27/98 (27%), Positives = 39/98 (39%), Gaps = 10/98 (10%)
Query: 131 DDANSYENVLICKQKTTETGAQQEGIGGLCRGDLSLSLALKTGPTSGLCPSASPEEDEES 190
D N +EN +++ +Q G GG G S K GP S PS + +S
Sbjct: 249 DSGNMFENGCYLRRQKRFKCEKQPGAGG-GGGSGSGGSGAKGGPESRKDPSGASNPSADS 307
Query: 191 EDYQNSASIHQWRESRKVMGQLQREASPGPVGSPDEED 228
+H+ + GQL+ +PGP SP D
Sbjct: 308 P-------LHRGVHGKT--GQLEGAPAPGPAASPQTLD 336
>gi|50233814 zinc finger CCCH-type containing 14 isoform 3 [Homo
sapiens]
Length = 571
Score = 30.0 bits (66), Expect = 1.9
Identities = 18/55 (32%), Positives = 30/55 (54%)
Query: 27 RCSRPGAKRSEKIYQQRSLREDQQSFTGSRTYSLVGQAWPGPLADMAPTRKDKLL 81
R S P +K++ K +++ E Q+S T + YS V Q P+A T +++LL
Sbjct: 307 RPSLPPSKQANKNLILKAISEAQESVTKTTNYSTVPQKQTLPVAPRTRTSQEELL 361
>gi|231570186 zinc finger CCCH-type containing 14 isoform 6 [Homo
sapiens]
Length = 730
Score = 30.0 bits (66), Expect = 1.9
Identities = 18/55 (32%), Positives = 30/55 (54%)
Query: 27 RCSRPGAKRSEKIYQQRSLREDQQSFTGSRTYSLVGQAWPGPLADMAPTRKDKLL 81
R S P +K++ K +++ E Q+S T + YS V Q P+A T +++LL
Sbjct: 341 RPSLPPSKQANKNLILKAISEAQESVTKTTNYSTVPQKQTLPVAPRTRTSQEELL 395
>gi|231570121 zinc finger CCCH-type containing 14 isoform 5 [Homo
sapiens]
Length = 735
Score = 30.0 bits (66), Expect = 1.9
Identities = 18/55 (32%), Positives = 30/55 (54%)
Query: 27 RCSRPGAKRSEKIYQQRSLREDQQSFTGSRTYSLVGQAWPGPLADMAPTRKDKLL 81
R S P +K++ K +++ E Q+S T + YS V Q P+A T +++LL
Sbjct: 341 RPSLPPSKQANKNLILKAISEAQESVTKTTNYSTVPQKQTLPVAPRTRTSQEELL 395
>gi|50233812 zinc finger CCCH-type containing 14 isoform 2 [Homo
sapiens]
Length = 579
Score = 30.0 bits (66), Expect = 1.9
Identities = 18/55 (32%), Positives = 30/55 (54%)
Query: 27 RCSRPGAKRSEKIYQQRSLREDQQSFTGSRTYSLVGQAWPGPLADMAPTRKDKLL 81
R S P +K++ K +++ E Q+S T + YS V Q P+A T +++LL
Sbjct: 341 RPSLPPSKQANKNLILKAISEAQESVTKTTNYSTVPQKQTLPVAPRTRTSQEELL 395
>gi|40804742 zinc finger CCCH-type containing 14 isoform 1 [Homo
sapiens]
Length = 736
Score = 30.0 bits (66), Expect = 1.9
Identities = 18/55 (32%), Positives = 30/55 (54%)
Query: 27 RCSRPGAKRSEKIYQQRSLREDQQSFTGSRTYSLVGQAWPGPLADMAPTRKDKLL 81
R S P +K++ K +++ E Q+S T + YS V Q P+A T +++LL
Sbjct: 341 RPSLPPSKQANKNLILKAISEAQESVTKTTNYSTVPQKQTLPVAPRTRTSQEELL 395
>gi|34452709 bromodomain containing 8 isoform 3 [Homo sapiens]
Length = 757
Score = 30.0 bits (66), Expect = 1.9
Identities = 18/64 (28%), Positives = 31/64 (48%)
Query: 163 DLSLSLALKTGPTSGLCPSASPEEDEESEDYQNSASIHQWRESRKVMGQLQREASPGPVG 222
++S SL ++G G +P EDEE + +AS+ + +E + G L + PV
Sbjct: 500 EMSDSLKEESGTIFGSQIKDAPGEDEEEDGVSEAASLEEPKEEDQGEGYLSEMDNEPPVS 559
Query: 223 SPDE 226
D+
Sbjct: 560 ESDD 563
>gi|34452707 bromodomain containing 8 isoform 2 [Homo sapiens]
Length = 1235
Score = 30.0 bits (66), Expect = 1.9
Identities = 18/64 (28%), Positives = 31/64 (48%)
Query: 163 DLSLSLALKTGPTSGLCPSASPEEDEESEDYQNSASIHQWRESRKVMGQLQREASPGPVG 222
++S SL ++G G +P EDEE + +AS+ + +E + G L + PV
Sbjct: 606 EMSDSLKEESGTIFGSQIKDAPGEDEEEDGVSEAASLEEPKEEDQGEGYLSEMDNEPPVS 665
Query: 223 SPDE 226
D+
Sbjct: 666 ESDD 669
>gi|34452705 bromodomain containing 8 isoform 1 [Homo sapiens]
Length = 951
Score = 30.0 bits (66), Expect = 1.9
Identities = 18/64 (28%), Positives = 31/64 (48%)
Query: 163 DLSLSLALKTGPTSGLCPSASPEEDEESEDYQNSASIHQWRESRKVMGQLQREASPGPVG 222
++S SL ++G G +P EDEE + +AS+ + +E + G L + PV
Sbjct: 679 EMSDSLKEESGTIFGSQIKDAPGEDEEEDGVSEAASLEEPKEEDQGEGYLSEMDNEPPVS 738
Query: 223 SPDE 226
D+
Sbjct: 739 ESDD 742
>gi|23503317 coiled-coil domain containing 96 [Homo sapiens]
Length = 555
Score = 30.0 bits (66), Expect = 1.9
Identities = 23/73 (31%), Positives = 29/73 (39%), Gaps = 3/73 (4%)
Query: 172 TGPTSGLCPSASPEEDEESEDYQNSASIHQWRESRK--VMGQLQREASPGPVGSPDEEDG 229
T P G S EE+EE Q + + E+ K + E PG G P E
Sbjct: 36 TSPEPGELESEPEEEEEEQAASQGGTAADEQAEAPKGLTAAEAAGEEGPGEPGRPAEPQP 95
Query: 230 EPDYVNGEVAATE 242
EP+ EV A E
Sbjct: 96 EPE-EPAEVGAEE 107
>gi|118600969 C-type lectin domain family 17, member A [Homo
sapiens]
Length = 289
Score = 29.6 bits (65), Expect = 2.5
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 14/56 (25%)
Query: 180 PSASPEEDEESEDYQNSASIHQWRESRKVMGQLQREASPGPVGSPDEEDGEPDYVN 235
P + EE+EE +DY+NS + ++ P P G+ +EE+ + DY N
Sbjct: 13 PPGTMEEEEEDDDYENSTPPY-------------KDLPPKP-GTMEEEEEDDDYEN 54
>gi|7710143 methyl-CpG binding domain protein 1 isoform 4 [Homo
sapiens]
Length = 503
Score = 29.6 bits (65), Expect = 2.5
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Query: 24 LCVRCSRPGAKRSEKIYQQRSLREDQQSFTGSRTYSLVGQAWPG--PLADMAPTRKDKLL 81
+C+R RPG +R K Q+R LR G + + PG PL P++ +
Sbjct: 242 ICLRPPRPGLRRQWKCVQRRCLRGKHARRKGGCDSKMAARRRPGAQPLPPPPPSQSPEPT 301
Query: 82 QFYPSLEDPA 91
+ +P P+
Sbjct: 302 EPHPRALAPS 311
>gi|21464119 methyl-CpG binding domain protein 1 isoform PCM1 [Homo
sapiens]
Length = 556
Score = 29.6 bits (65), Expect = 2.5
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Query: 24 LCVRCSRPGAKRSEKIYQQRSLREDQQSFTGSRTYSLVGQAWPG--PLADMAPTRKDKLL 81
+C+R RPG +R K Q+R LR G + + PG PL P++ +
Sbjct: 193 ICLRPPRPGLRRQWKCVQRRCLRGKHARRKGGCDSKMAARRRPGAQPLPPPPPSQSPEPT 252
Query: 82 QFYPSLEDPA 91
+ +P P+
Sbjct: 253 EPHPRALAPS 262
>gi|21464117 methyl-CpG binding domain protein 1 isoform 1 [Homo
sapiens]
Length = 605
Score = 29.6 bits (65), Expect = 2.5
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Query: 24 LCVRCSRPGAKRSEKIYQQRSLREDQQSFTGSRTYSLVGQAWPG--PLADMAPTRKDKLL 81
+C+R RPG +R K Q+R LR G + + PG PL P++ +
Sbjct: 242 ICLRPPRPGLRRQWKCVQRRCLRGKHARRKGGCDSKMAARRRPGAQPLPPPPPSQSPEPT 301
Query: 82 QFYPSLEDPA 91
+ +P P+
Sbjct: 302 EPHPRALAPS 311
>gi|156105673 methyl-CpG binding domain protein 1 isoform 3 [Homo
sapiens]
Length = 549
Score = 29.6 bits (65), Expect = 2.5
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Query: 24 LCVRCSRPGAKRSEKIYQQRSLREDQQSFTGSRTYSLVGQAWPG--PLADMAPTRKDKLL 81
+C+R RPG +R K Q+R LR G + + PG PL P++ +
Sbjct: 242 ICLRPPRPGLRRQWKCVQRRCLRGKHARRKGGCDSKMAARRRPGAQPLPPPPPSQSPEPT 301
Query: 82 QFYPSLEDPA 91
+ +P P+
Sbjct: 302 EPHPRALAPS 311
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.310 0.129 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,250,455
Number of Sequences: 37866
Number of extensions: 554996
Number of successful extensions: 1692
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 1654
Number of HSP's gapped (non-prelim): 83
length of query: 243
length of database: 18,247,518
effective HSP length: 99
effective length of query: 144
effective length of database: 14,498,784
effective search space: 2087824896
effective search space used: 2087824896
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.