Guide to the Human Genome
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Name: CD19 Sequence: fasta or formatted (556aa) NCBI GI: 91105174
Description:

CD19 antigen

Referenced in:

B cells

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.9         27           2
 C cysteine            1.4          8           1
 D aspartate           5.6         31           2
 E glutamate           7.6         42           4
 F phenylalanine       2.7         15           2
 G glycine            10.6         59           4
 H histidine           1.6          9           1
 I isoleucine          1.6          9           1
 K lysine              3.1         17           1
 L leucine            11.5         64           3
 M methionine          2.5         14           1
 N asparagine          3.2         18           1
 P proline            10.3         57           3
 Q glutamine           4.0         22           2
 R arginine            5.8         32           2
 S serine              9.4         52           2
 T threonine           4.5         25           1
 V valine              4.3         24           2
 W tryptophan          3.1         17           1
 Y tyrosine            2.5         14           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   CD19 antigen 
CASZ1                 0.019   castor homolog 1, zinc finger isoform a 
RP1L1                 0.018   retinitis pigmentosa 1-like 1 
AEBP2                 0.016   AE binding protein 2 isoform b 
AEBP2                 0.016   AE binding protein 2 isoform a 
HNRNPUL1              0.015   heterogeneous nuclear ribonucleoprotein U-like 1 iso...
MYST4                 0.015   MYST histone acetyltransferase (monocytic leukemia)...
MICAL3                0.015   microtubule associated monoxygenase, calponin and L...
COL4A2                0.014   alpha 2 type IV collagen preproprotein 
ANP32B                0.014   acidic (leucine-rich) nuclear phosphoprotein 32 famil...
MYT1L                 0.013   myelin transcription factor 1-like 
CT47A1                0.013   cancer/testis antigen family 47, member A1 
CT47A2                0.013   cancer/testis antigen family 47, member A2 
CT47A3                0.013   cancer/testis antigen family 47, member A3 
CT47A4                0.013   cancer/testis antigen family 47, member A4 
CT47A5                0.013   cancer/testis antigen family 47, member A5 
CT47A6                0.013   cancer/testis antigen family 47, member A6 
CT47A7                0.013   cancer/testis antigen family 47, member A7 
CT47A8                0.013   cancer/testis antigen family 47, member A8 
CT47A9                0.013   cancer/testis antigen family 47, member A9 
CT47A10               0.013   cancer/testis antigen family 47, member A10 
CT47A11               0.013   cancer/testis antigen family 47, member A11 
SIGLEC8               0.012   sialic acid binding Ig-like lectin 8 
RPGR                  0.012   retinitis pigmentosa GTPase regulator isoform C [Hom...
SALL2                 0.012   sal-like 2 
HRC                   0.012   histidine rich calcium binding protein precursor [Hom...
RBMXL1                0.012   RNA binding motif protein, X-linked-like 1 
RBMXL1                0.012   RNA binding motif protein, X-linked-like 1 
PMS2                  0.011   PMS2 postmeiotic segregation increased 2 isoform a [H...
KIAA1211              0.011   hypothetical protein LOC57482 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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