Guide to the Human Genome
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Name: CLEC17A Sequence: fasta or formatted (289aa) NCBI GI: 118600969
Description:

C-type lectin domain family 17, member A

Referenced in:

Lectin Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.5         16           2
 C cysteine            3.5         10           2
 D aspartate           4.8         14           3
 E glutamate           8.3         24           5
 F phenylalanine       2.4          7           1
 G glycine             6.2         18           2
 H histidine           1.4          4           1
 I isoleucine          2.1          6           2
 K lysine              4.2         12           1
 L leucine            11.8         34           2
 M methionine          3.8         11           1
 N asparagine          3.5         10           1
 P proline            11.8         34           3
 Q glutamine           3.5         10           2
 R arginine            4.5         13           2
 S serine              6.6         19           2
 T threonine           6.9         20           1
 V valine              3.5         10           2
 W tryptophan          2.1          6           1
 Y tyrosine            3.8         11           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   C-type lectin domain family 17, member A 
ASGR2                 0.056   asialoglycoprotein receptor 2 isoform c 
ASGR2                 0.056   asialoglycoprotein receptor 2 isoform b 
ASGR2                 0.056   asialoglycoprotein receptor 2 isoform a 
ASGR2                 0.056   asialoglycoprotein receptor 2 isoform a 
CLEC2D                0.051   osteoclast inhibitory lectin isoform 2 
CLEC2D                0.051   osteoclast inhibitory lectin isoform 1 
FCER2                 0.049   Fc fragment of IgE, low affinity II, receptor for (C...
KLRF1                 0.049   killer cell lectin-like receptor subfamily F, member ...
CLEC10A               0.044   C-type lectin, superfamily member 14 isoform 1 [Homo...
CLEC10A               0.044   C-type lectin, superfamily member 14 isoform 2 [Homo...
COLEC12               0.044   collectin sub-family member 12 
CLEC4G                0.041   C-type lectin domain family 4, member G 
ASGR1                 0.041   asialoglycoprotein receptor 1 
CD209                 0.037   CD209 molecule isoform 8 
CLEC4M                0.036   C-type lectin domain family 4, member M isoform 10 ...
CLEC4M                0.036   C-type lectin domain family 4, member M isoform 3 [...
WNK2                  0.036   WNK lysine deficient protein kinase 2 
LY75                  0.036   lymphocyte antigen 75 
KLRG1                 0.036   killer cell lectin-like receptor subfamily G, member...
CLEC2L                0.036   C-type lectin domain family 2, member L 
SOS2                  0.034   son of sevenless homolog 2 
CLEC4M                0.034   C-type lectin domain family 4, member M isoform 11 ...
CLEC2B                0.034   C-type lectin, superfamily member 2 
CLEC4M                0.034   C-type lectin domain family 4, member M isoform 9 [...
CLEC4M                0.034   C-type lectin domain family 4, member M isoform 7 [...
CLEC4M                0.034   C-type lectin domain family 4, member M isoform 12 ...
CLEC4M                0.034   C-type lectin domain family 4, member M isoform 2 [...
CLEC4M                0.034   C-type lectin domain family 4, member M isoform 8 [...
CLEC4M                0.034   C-type lectin domain family 4, member M isoform 1 [H...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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