Guide to the Human Genome
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Name: PRKCSH Sequence: fasta or formatted (525aa) NCBI GI: 48255891
Description:

protein kinase C substrate 80K-H isoform 2

Referenced in:

Protein Glycosylation
Hexokinases and Initial Sugar Metabolism

Other entries for this name:
alt prot [528aa] protein kinase C substrate 80K-H isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.4         39           3
 C cysteine            3.2         17           2
 D aspartate           7.4         39           3
 E glutamate          15.2         80          13
 F phenylalanine       2.7         14           1
 G glycine             5.3         28           2
 H histidine           1.3          7           2
 I isoleucine          2.1         11           1
 K lysine              6.5         34           2
 L leucine             8.0         42           5
 M methionine          2.1         11           1
 N asparagine          2.5         13           1
 P proline             7.2         38           3
 Q glutamine           5.0         26           2
 R arginine            3.8         20           1
 S serine              5.9         31           2
 T threonine           6.5         34           2
 V valine              3.6         19           1
 W tryptophan          1.3          7           1
 Y tyrosine            2.9         15           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   protein kinase C substrate 80K-H isoform 2 
PRKCSH                0.982   protein kinase C substrate 80K-H isoform 1 
WDR87                 0.044   NYD-SP11 protein 
EIF5B                 0.041   eukaryotic translation initiation factor 5B 
MSN                   0.037   moesin 
CDC2L1                0.037   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.037   cell division cycle 2-like 1 (PITSLRE proteins) isof...
PELP1                 0.036   proline, glutamic acid and leucine rich protein 1 [...
LOC283685             0.035   PREDICTED: golgi autoantigen, golgin subfamily a-li...
CDC2L1                0.033   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.033   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L2                0.033   cell division cycle 2-like 2 isoform 4 
LOC727832             0.033   golgi autoantigen, golgin subfamily a-like 
CDC2L2                0.032   cell division cycle 2-like 2 isoform 1 
LOC283685             0.032   PREDICTED: golgi autoantigen, golgin subfamily a-li...
TCHH                  0.032   trichohyalin 
NEFM                  0.031   neurofilament, medium polypeptide 150kDa isoform 1 ...
NEFM                  0.031   neurofilament, medium polypeptide 150kDa isoform 2 ...
RP1L1                 0.030   retinitis pigmentosa 1-like 1 
LOC440243             0.030   PREDICTED: Putative golgin subfamily A member 6-lik...
RDX                   0.030   radixin 
GNPTG                 0.030   N-acetylglucosamine-1-phosphotransferase, gamma subu...
LOC283767             0.029   golgi autoantigen, golgin subfamily a-like 
CDC2L1                0.029   cell division cycle 2-like 1 (PITSLRE proteins) isof...
MYH9                  0.028   myosin, heavy polypeptide 9, non-muscle 
MYT1                  0.028   myelin transcription factor 1 
ATRX                  0.028   transcriptional regulator ATRX isoform 2 
ATRX                  0.028   transcriptional regulator ATRX isoform 1 
NEFL                  0.028   neurofilament, light polypeptide 68kDa 
MYST4                 0.028   MYST histone acetyltransferase (monocytic leukemia)...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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