Guide to the Human Genome
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Name: PCDHA3 Sequence: fasta or formatted (950aa) NCBI GI: 9256586
Description:

protocadherin alpha 3 isoform 1 precursor

Referenced in:

Cadherins and Related Proteins

Other entries for this name:
alt prot [824aa] protocadherin alpha 3 isoform 2 precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.6         72           2
 C cysteine            1.3         12           1
 D aspartate           6.3         60           1
 E glutamate           6.8         65           2
 F phenylalanine       2.7         26           1
 G glycine             7.2         68           2
 H histidine           1.8         17           1
 I isoleucine          4.0         38           2
 K lysine              4.8         46           8
 L leucine            10.4         99           4
 M methionine          0.7          7           1
 N asparagine          4.4         42           2
 P proline             6.4         61           2
 Q glutamine           3.5         33           2
 R arginine            4.3         41           2
 S serine              9.9         94           2
 T threonine           5.2         49           2
 V valine              9.6         91           2
 W tryptophan          0.7          7           1
 Y tyrosine            2.3         22           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   protocadherin alpha 3 isoform 1 precursor 
PCDHA4                0.843   protocadherin alpha 4 isoform 1 precursor 
PCDHA3                0.830   protocadherin alpha 3 isoform 2 precursor 
PCDHA6                0.830   protocadherin alpha 6 isoform 1 precursor 
PCDHA13               0.824   protocadherin alpha 13 isoform 1 precursor 
PCDHA9                0.824   protocadherin alpha 9 isoform 1 precursor 
PCDHA8                0.823   protocadherin alpha 8 isoform 1 precursor 
PCDHA2                0.818   protocadherin alpha 2 isoform 1 precursor 
PCDHA7                0.816   protocadherin alpha 7 isoform 1 precursor 
PCDHA1                0.816   protocadherin alpha 1 isoform 1 precursor 
PCDHA5                0.806   protocadherin alpha 5 isoform 1 precursor 
PCDHA10               0.798   protocadherin alpha 10 isoform 1 precursor 
PCDHA11               0.794   protocadherin alpha 11 isoform 1 precursor 
PCDHA12               0.783   protocadherin alpha 12 isoform 1 precursor 
PCDHA4                0.674   protocadherin alpha 4 isoform 2 precursor 
PCDHA6                0.660   protocadherin alpha 6 isoform 2 precursor 
PCDHA13               0.655   protocadherin alpha 13 isoform 2 precursor 
PCDHA9                0.654   protocadherin alpha 9 isoform 2 precursor 
PCDHA8                0.653   protocadherin alpha 8 isoform 2 precursor 
PCDHA7                0.651   protocadherin alpha 7 isoform 2 precursor 
PCDHA2                0.649   protocadherin alpha 2 isoform 2 precursor 
PCDHA1                0.646   protocadherin alpha 1 isoform 2 precursor 
PCDHA5                0.641   protocadherin alpha 5 isoform 2 precursor 
PCDHA10               0.628   protocadherin alpha 10 isoform 2 precursor 
PCDHA11               0.626   protocadherin alpha 11 isoform 2 precursor 
PCDHA12               0.618   protocadherin alpha 12 isoform 2 precursor 
PCDHA6                0.421   protocadherin alpha 6 isoform 3 precursor 
PCDHA1                0.416   protocadherin alpha 1 isoform 3 precursor 
PCDHA10               0.405   protocadherin alpha 10 isoform 3 precursor 
PCDHGC3               0.327   protocadherin gamma subfamily C, 3 isoform 1 precurs...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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