Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: CAST Sequence: fasta or formatted (667aa) NCBI GI: 109637767
Description:

calpastatin isoform j

Referenced in:

Protease Inhibitors

Other entries for this name:
alt prot [791aa] calpastatin isoform a
alt prot [756aa] calpastatin isoform e
alt prot [750aa] calpastatin isoform f
alt prot [772aa] calpastatin isoform g
alt prot [769aa] calpastatin isoform h
alt prot [708aa] calpastatin isoform i
alt prot [673aa] calpastatin isoform k
alt prot [654aa] calpastatin isoform l
alt prot [686aa] calpastatin isoform b
alt prot [430aa] calpastatin isoform c
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.0         60           3
 C cysteine            1.0          7           1
 D aspartate          10.0         67           2
 E glutamate          11.8         79           3
 F phenylalanine       0.7          5           1
 G glycine             5.1         34           2
 H histidine           0.4          3           1
 I isoleucine          2.5         17           1
 K lysine             13.6         91           3
 L leucine             6.4         43           2
 M methionine          1.3          9           1
 N asparagine          1.3          9           1
 P proline             9.7         65           2
 Q glutamine           3.0         20           2
 R arginine            2.7         18           1
 S serine             10.0         67           3
 T threonine           6.7         45           2
 V valine              3.3         22           2
 W tryptophan          0.0          0           0
 Y tyrosine            0.9          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   calpastatin isoform j 
CAST                  1.000   calpastatin isoform f 
CAST                  0.992   calpastatin isoform h 
CAST                  0.992   calpastatin isoform b 
CAST                  0.991   calpastatin isoform g 
CAST                  0.981   calpastatin isoform i 
CAST                  0.981   calpastatin isoform a 
CAST                  0.973   calpastatin isoform l 
CAST                  0.964   calpastatin isoform k 
CAST                  0.964   calpastatin isoform e 
CAST                  0.583   calpastatin isoform c 
NEFH                  0.051   neurofilament, heavy polypeptide 200kDa 
NEFM                  0.032   neurofilament, medium polypeptide 150kDa isoform 1 ...
NEFM                  0.032   neurofilament, medium polypeptide 150kDa isoform 2 ...
PCLO                  0.030   piccolo isoform 2 
PCLO                  0.030   piccolo isoform 1 
TRDN                  0.029   triadin 
PRG4                  0.028   proteoglycan 4 isoform D 
PRG4                  0.028   proteoglycan 4 isoform C 
PRG4                  0.028   proteoglycan 4 isoform B 
PRG4                  0.028   proteoglycan 4 isoform A 
AFF4                  0.028   ALL1 fused gene from 5q31 
BDP1                  0.027   transcription factor-like nuclear regulator 
NOLC1                 0.026   nucleolar and coiled-body phosphoprotein 1 
EIF5B                 0.025   eukaryotic translation initiation factor 5B 
AFF1                  0.025   myeloid/lymphoid or mixed-lineage leukemia trithorax ...
CEP164                0.023   centrosomal protein 164kDa 
ACIN1                 0.023   apoptotic chromatin condensation inducer 1 
DSPP                  0.023   dentin sialophosphoprotein preproprotein 
TCOF1                 0.022   Treacher Collins-Franceschetti syndrome 1 isoform e...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press