Guide to the Human Genome
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Name: CAST Sequence: fasta or formatted (769aa) NCBI GI: 109637763
Description:

calpastatin isoform h

Referenced in:

Protease Inhibitors

Other entries for this name:
alt prot [791aa] calpastatin isoform a
alt prot [756aa] calpastatin isoform e
alt prot [750aa] calpastatin isoform f
alt prot [772aa] calpastatin isoform g
alt prot [708aa] calpastatin isoform i
alt prot [667aa] calpastatin isoform j
alt prot [673aa] calpastatin isoform k
alt prot [654aa] calpastatin isoform l
alt prot [686aa] calpastatin isoform b
alt prot [430aa] calpastatin isoform c
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.5         73           4
 C cysteine            0.9          7           1
 D aspartate           8.8         68           2
 E glutamate          11.4         88           3
 F phenylalanine       0.7          5           1
 G glycine             5.5         42           2
 H histidine           0.9          7           1
 I isoleucine          2.2         17           1
 K lysine             13.5        104           3
 L leucine             5.9         45           2
 M methionine          1.3         10           1
 N asparagine          1.2          9           1
 P proline             9.4         72           2
 Q glutamine           3.1         24           2
 R arginine            3.1         24           2
 S serine             11.6         89           3
 T threonine           6.8         52           2
 V valine              3.4         26           2
 W tryptophan          0.0          0           0
 Y tyrosine            0.9          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   calpastatin isoform h 
CAST                  0.992   calpastatin isoform a 
CAST                  0.977   calpastatin isoform e 
CAST                  0.967   calpastatin isoform f 
CAST                  0.960   calpastatin isoform g 
CAST                  0.895   calpastatin isoform b 
CAST                  0.887   calpastatin isoform i 
CAST                  0.871   calpastatin isoform k 
CAST                  0.862   calpastatin isoform j 
CAST                  0.838   calpastatin isoform l 
CAST                  0.507   calpastatin isoform c 
NEFH                  0.044   neurofilament, heavy polypeptide 200kDa 
AKAP12                0.032   A kinase (PRKA) anchor protein 12 isoform 1 
AKAP12                0.032   A kinase (PRKA) anchor protein 12 isoform 2 
PCLO                  0.032   piccolo isoform 2 
PCLO                  0.032   piccolo isoform 1 
AFF4                  0.032   ALL1 fused gene from 5q31 
NEFM                  0.028   neurofilament, medium polypeptide 150kDa isoform 1 ...
NEFM                  0.028   neurofilament, medium polypeptide 150kDa isoform 2 ...
TRDN                  0.028   triadin 
DSPP                  0.027   dentin sialophosphoprotein preproprotein 
PRG4                  0.026   proteoglycan 4 isoform D 
PRG4                  0.026   proteoglycan 4 isoform C 
PRG4                  0.026   proteoglycan 4 isoform B 
PRG4                  0.026   proteoglycan 4 isoform A 
NOLC1                 0.026   nucleolar and coiled-body phosphoprotein 1 
BDP1                  0.026   transcription factor-like nuclear regulator 
TCOF1                 0.026   Treacher Collins-Franceschetti syndrome 1 isoform e...
TCOF1                 0.026   Treacher Collins-Franceschetti syndrome 1 isoform a ...
AFF1                  0.025   myeloid/lymphoid or mixed-lineage leukemia trithorax ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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