Guide to the Human Genome
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Name: TRDN Sequence: fasta or formatted (729aa) NCBI GI: 104526627
Description:

triadin

Referenced in:

Muscle

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0         51           3
 C cysteine            0.3          2           1
 D aspartate           4.9         36           3
 E glutamate          13.7        100           2
 F phenylalanine       1.6         12           2
 G glycine             4.5         33           2
 H histidine           1.6         12           1
 I isoleucine          4.8         35           2
 K lysine             21.7        158           3
 L leucine             3.0         22           2
 M methionine          0.8          6           1
 N asparagine          0.8          6           1
 P proline             7.3         53           3
 Q glutamine           4.3         31           2
 R arginine            2.1         15           1
 S serine              7.0         51           2
 T threonine           7.1         52           4
 V valine              6.0         44           1
 W tryptophan          0.4          3           1
 Y tyrosine            1.0          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   triadin 
NEFH                  0.103   neurofilament, heavy polypeptide 200kDa 
TTN                   0.060   titin isoform N2-A 
CALD1                 0.057   caldesmon 1 isoform 1 
EIF5B                 0.057   eukaryotic translation initiation factor 5B 
MAP1B                 0.055   microtubule-associated protein 1B 
NEFM                  0.055   neurofilament, medium polypeptide 150kDa isoform 2 ...
NEFM                  0.054   neurofilament, medium polypeptide 150kDa isoform 1 ...
BOD1L                 0.053   biorientation of chromosomes in cell division 1-like...
ANKRD12               0.053   ankyrin repeat domain 12 isoform 2 
ANKRD12               0.053   ankyrin repeat domain 12 isoform 1 
TCHH                  0.052   trichohyalin 
NOLC1                 0.050   nucleolar and coiled-body phosphoprotein 1 
ANKRD11               0.050   ankyrin repeat domain 11 
THOC2                 0.048   THO complex 2 
CYLC1                 0.048   cylicin, basic protein of sperm head cytoskeleton 1...
C14orf174             0.047   hypothetical protein LOC161394 
LOC727832             0.045   golgi autoantigen, golgin subfamily a-like 
LOC283685             0.045   PREDICTED: golgi autoantigen, golgin subfamily a-li...
LOC283685             0.043   PREDICTED: golgi autoantigen, golgin subfamily a-li...
PPIG                  0.043   peptidylprolyl isomerase G 
LOC100286959          0.042   PREDICTED: hypothetical protein XP_002343921 
TAF3                  0.042   RNA polymerase II transcription factor TAFII140 [Ho...
PCLO                  0.041   piccolo isoform 2 
PCLO                  0.041   piccolo isoform 1 
CYLC2                 0.041   cylicin 2 
WDR87                 0.040   NYD-SP11 protein 
LOC283767             0.040   golgi autoantigen, golgin subfamily a-like 
PRPF4B                0.040   serine/threonine-protein kinase PRP4K 
LOC440243             0.040   PREDICTED: Putative golgin subfamily A member 6-lik...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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