Guide to the Human Genome
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Name: PDZRN4 Sequence: fasta or formatted (778aa) NCBI GI: 142976783
Description:

PDZ domain containing RING finger 4

Referenced in:

PDZ Domain
Ring Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.9         38           2
 C cysteine            2.2         17           1
 D aspartate           6.2         48           3
 E glutamate          12.2         95           4
 F phenylalanine       1.4         11           1
 G glycine             4.2         33           2
 H histidine           2.7         21           1
 I isoleucine          4.4         34           2
 K lysine              6.8         53           2
 L leucine             8.2         64           2
 M methionine          3.1         24           2
 N asparagine          4.6         36           2
 P proline             3.7         29           2
 Q glutamine           5.1         40           2
 R arginine            6.4         50           4
 S serine              9.9         77           3
 T threonine           5.5         43           2
 V valine              4.5         35           2
 W tryptophan          0.6          5           1
 Y tyrosine            3.2         25           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PDZ domain containing RING finger 4 
PDZRN3                0.588   PDZ domain containing ring finger 3 
PDZD4                 0.426   PDZ domain containing 4 
MPDZ                  0.023   multiple PDZ domain protein 
INADL                 0.023   InaD-like 
SCRIB                 0.023   scribble isoform b 
SCRIB                 0.023   scribble isoform a 
SYNJ2BP               0.022   synaptojanin 2 binding protein 
PARD3B                0.020   par-3 partitioning defective 3 homolog B isoform b ...
LNX2                  0.020   ligand of numb-protein X 2 
IL16                  0.020   interleukin 16 isoform 2 
PARD3B                0.020   par-3 partitioning defective 3 homolog B isoform a ...
PARD3B                0.020   par-3 partitioning defective 3 homolog B isoform c ...
DLG2                  0.018   chapsyn-110 isoform 3 
DLG2                  0.018   chapsyn-110 isoform 1 
DLG2                  0.018   chapsyn-110 isoform 2 
DLG1                  0.017   discs, large homolog 1 isoform 1 
DLG1                  0.017   discs, large homolog 1 isoform 2 
DFNB31                0.016   CASK-interacting protein CIP98 isoform 1 
PDZD2                 0.016   PDZ domain containing 2 
LNX1                  0.016   ligand of numb-protein X 1 isoform a 
LNX1                  0.016   ligand of numb-protein X 1 isoform b 
GCC2                  0.016   GRIP and coiled-coil domain-containing 2 
DLG4                  0.016   post-synaptic density protein 95 isoform 2 
DLG4                  0.016   post-synaptic density protein 95 isoform 1 
MYST3                 0.015   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.015   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.015   MYST histone acetyltransferase (monocytic leukemia)...
SLK                   0.014   serine/threonine kinase 2 
DVL1                  0.014   dishevelled 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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