Guide to the Human Genome
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Name: NKAP Sequence: fasta or formatted (415aa) NCBI GI: 168229156
Description:

NFKB activating protein

Referenced in:

NF-kappaB Pathway

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.5         23           2
 C cysteine            0.5          2           1
 D aspartate           5.3         22           2
 E glutamate          10.4         43           3
 F phenylalanine       1.2          5           1
 G glycine             6.3         26           2
 H histidine           1.7          7           1
 I isoleucine          1.9          8           1
 K lysine             13.5         56           4
 L leucine             4.6         19           2
 M methionine          1.2          5           1
 N asparagine          2.2          9           1
 P proline             5.8         24           1
 Q glutamine           1.9          8           1
 R arginine           12.3         51           3
 S serine             17.6         73           3
 T threonine           2.7         11           2
 V valine              1.9          8           1
 W tryptophan          0.7          3           1
 Y tyrosine            2.9         12           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   NFKB activating protein 
NKAPL                 0.535   NFKB activating protein-like 
SFRS12                0.081   splicing factor, arginine/serine-rich 12 isoform a ...
SFRS12                0.081   splicing factor, arginine/serine-rich 12 isoform b [...
PRPF38B               0.079   PRP38 pre-mRNA processing factor 38 (yeast) domain ...
SFRS4                 0.068   splicing factor, arginine/serine-rich 4 
LOC100170229          0.066   hypothetical protein LOC100170229 
FAM133B               0.064   hypothetical protein LOC257415 isoform 2 
FAM133B               0.064   hypothetical protein LOC257415 isoform 1 
C11orf57              0.061   hypothetical protein LOC55216 isoform a 
C11orf57              0.061   hypothetical protein LOC55216 isoform a 
LOC100133599          0.061   PREDICTED: hypothetical protein 
C11orf57              0.061   hypothetical protein LOC55216 isoform b 
LOC100133599          0.060   PREDICTED: hypothetical protein 
PPIG                  0.059   peptidylprolyl isomerase G 
ATRX                  0.059   transcriptional regulator ATRX isoform 2 
ATRX                  0.059   transcriptional regulator ATRX isoform 1 
SFRS11                0.059   splicing factor, arginine/serine-rich 11 
LOC100294088          0.056   PREDICTED: hypothetical protein, partial 
NKTR                  0.055   natural killer-tumor recognition sequence 
FAM133A               0.055   hypothetical protein LOC286499 
TOPORS                0.054   topoisomerase I binding, arginine/serine-rich 
SFRS18                0.054   splicing factor, arginine/serine-rich 130 
SFRS18                0.054   splicing factor, arginine/serine-rich 130 
SFRS12IP1             0.053   P18SRP protein 
CYLC2                 0.051   cylicin 2 
GPATCH8               0.050   G patch domain containing 8 
ARL6IP4               0.049   SRp25 nuclear protein isoform 3 
CIR1                  0.049   CBF1 interacting corepressor 
SFRS16                0.048   splicing factor, arginine/serine-rich 16 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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