Guide to the Human Genome
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Name: SFRS18 Sequence: fasta or formatted (805aa) NCBI GI: 154146223
Description:

splicing factor, arginine/serine-rich 130

Referenced in:

Capping and Splicing

Other entries for this name:
alt mRNA [805aa] splicing factor, arginine/serine-rich 130
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.3         35           2
 C cysteine            0.0          0           0
 D aspartate           6.0         48           2
 E glutamate           9.4         76           4
 F phenylalanine       2.1         17           1
 G glycine             5.7         46           2
 H histidine           2.6         21           1
 I isoleucine          2.6         21           2
 K lysine              9.4         76           3
 L leucine             3.5         28           2
 M methionine          2.4         19           2
 N asparagine          3.6         29           2
 P proline             6.8         55           3
 Q glutamine           7.2         58           3
 R arginine           11.6         93           3
 S serine             14.5        117           4
 T threonine           3.4         27           2
 V valine              2.4         19           2
 W tryptophan          1.5         12           1
 Y tyrosine            1.0          8           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   splicing factor, arginine/serine-rich 130 
SFRS18                1.000   splicing factor, arginine/serine-rich 130 
SFRS4                 0.066   splicing factor, arginine/serine-rich 4 
SFRS12                0.065   splicing factor, arginine/serine-rich 12 isoform a ...
SFRS12                0.065   splicing factor, arginine/serine-rich 12 isoform b [...
PRPF38B               0.065   PRP38 pre-mRNA processing factor 38 (yeast) domain ...
LOC100170229          0.061   hypothetical protein LOC100170229 
LOC100286959          0.058   PREDICTED: hypothetical protein XP_002343921 
SRRM2                 0.054   splicing coactivator subunit SRm300 
PPIG                  0.052   peptidylprolyl isomerase G 
ZC3H13                0.051   zinc finger CCCH-type containing 13 
PNN                   0.048   pinin, desmosome associated protein 
SFRS11                0.047   splicing factor, arginine/serine-rich 11 
RSRC2                 0.047   arginine/serine-rich coiled-coil 2 isoform a 
DDX46                 0.046   DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 
PRPF4B                0.045   serine/threonine-protein kinase PRP4K 
CALD1                 0.044   caldesmon 1 isoform 1 
RSRC1                 0.044   arginine/serine-rich coiled-coil 1 
TCHH                  0.043   trichohyalin 
SON                   0.041   SON DNA-binding protein isoform F 
SON                   0.041   SON DNA-binding protein isoform B 
LOC731605             0.040   PREDICTED: similar to BCL2-associated transcription...
BCLAF1                0.040   BCL2-associated transcription factor 1 isoform 3 [H...
BCLAF1                0.040   BCL2-associated transcription factor 1 isoform 1 [Hom...
THOC2                 0.040   THO complex 2 
LOC100131202          0.040   PREDICTED: hypothetical protein 
LOC731605             0.039   PREDICTED: similar to BCL2-associated transcription...
LOC100133599          0.039   PREDICTED: hypothetical protein 
BCLAF1                0.039   BCL2-associated transcription factor 1 isoform 2 [H...
RBM25                 0.039   RNA binding motif protein 25 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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