Guide to the Human Genome
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Name: CHD7 Sequence: fasta or formatted (2997aa) NCBI GI: 54112403
Description:

chromodomain helicase DNA binding protein 7

Referenced in:

Nonhistone Chromosomal Proteins
PHD Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.4        191           7
 C cysteine            1.1         32           2
 D aspartate           5.8        173           3
 E glutamate           8.5        256           5
 F phenylalanine       3.3         99           1
 G glycine             6.8        203           3
 H histidine           2.4         72           3
 I isoleucine          3.7        110           2
 K lysine              6.8        204           6
 L leucine             8.0        240           2
 M methionine          2.8         84           2
 N asparagine          4.7        141           3
 P proline             7.8        233           3
 Q glutamine           6.0        179           4
 R arginine            5.9        178           6
 S serine              7.9        237           3
 T threonine           4.4        132           3
 V valine              4.6        139           3
 W tryptophan          1.0         31           2
 Y tyrosine            2.1         63           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   chromodomain helicase DNA binding protein 7 
CHD9                  0.429   chromodomain helicase DNA binding protein 9 
CHD8                  0.348   chromodomain helicase DNA binding protein 8 
CHD6                  0.330   chromodomain helicase DNA binding protein 6 
CHD2                  0.086   chromodomain helicase DNA binding protein 2 isoform...
CHD4                  0.083   chromodomain helicase DNA binding protein 4 
CHD3                  0.083   chromodomain helicase DNA binding protein 3 isoform ...
CHD3                  0.083   chromodomain helicase DNA binding protein 3 isoform ...
CHD3                  0.083   chromodomain helicase DNA binding protein 3 isoform...
CHD1                  0.081   chromodomain helicase DNA binding protein 1 
CHD5                  0.079   chromodomain helicase DNA binding protein 5 
SMARCA1               0.062   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA5               0.062   SWI/SNF-related matrix-associated actin-dependent re...
SMARCA1               0.061   SWI/SNF-related matrix-associated actin-dependent re...
SMARCA2               0.060   SWI/SNF-related matrix-associated actin-dependent re...
SMARCA2               0.060   SWI/SNF-related matrix-associated actin-dependent re...
CHD1L                 0.059   chromodomain helicase DNA binding protein 1-like [H...
HELLS                 0.057   helicase, lymphoid-specific 
SMARCA4               0.056   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.056   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.056   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.056   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.056   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.056   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.056   SWI/SNF-related matrix-associated actin-dependent re...
SMARCAD1              0.042   SWI/SNF-related, matrix-associated actin-dependent ...
SMARCAD1              0.042   SWI/SNF-related, matrix-associated actin-dependent ...
SMARCAD1              0.042   SWI/SNF-related, matrix-associated actin-dependent ...
ERCC6                 0.038   excision repair cross-complementing rodent repair def...
C9orf102              0.033   RAD26L hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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