Search of human proteins with 14165419

Search of human proteins with 14165419

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|14165419 protocadherin alpha 7 isoform 2 precursor [Homo
sapiens]
         (789 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|14165419 protocadherin alpha 7 isoform 2 precursor [Homo sapi...  1556   0.0  
gi|9256594 protocadherin alpha 7 isoform 1 precursor [Homo sapiens]  1548   0.0  
gi|7662068 protocadherin alpha 9 isoform 2 precursor [Homo sapiens]  1358   0.0  
gi|14165425 protocadherin alpha 9 isoform 1 precursor [Homo sapi...  1358   0.0  
gi|14165413 protocadherin alpha 4 isoform 2 precursor [Homo sapi...  1276   0.0  
gi|9256588 protocadherin alpha 4 isoform 1 precursor [Homo sapiens]  1276   0.0  
gi|9256586 protocadherin alpha 3 isoform 1 precursor [Homo sapiens]  1230   0.0  
gi|14165410 protocadherin alpha 3 isoform 2 precursor [Homo sapi...  1230   0.0  
gi|14165416 protocadherin alpha 5 isoform 2 precursor [Homo sapi...  1202   0.0  
gi|14165397 protocadherin alpha 13 isoform 2 precursor [Homo sap...  1201   0.0  
gi|9256580 protocadherin alpha 13 isoform 1 precursor [Homo sapi...  1201   0.0  
gi|14165390 protocadherin alpha 6 isoform 2 precursor [Homo sapi...  1200   0.0  
gi|9256592 protocadherin alpha 6 isoform 1 precursor [Homo sapiens]  1200   0.0  
gi|9256590 protocadherin alpha 5 isoform 1 precursor [Homo sapiens]  1199   0.0  
gi|14165400 protocadherin alpha 1 isoform 2 precursor [Homo sapi...  1196   0.0  
gi|9256582 protocadherin alpha 1 isoform 1 precursor [Homo sapiens]  1196   0.0  
gi|14165422 protocadherin alpha 8 isoform 2 precursor [Homo sapi...  1192   0.0  
gi|9256596 protocadherin alpha 8 isoform 1 precursor [Homo sapiens]  1192   0.0  
gi|14165405 protocadherin alpha 2 isoform 2 precursor [Homo sapi...  1187   0.0  
gi|9256584 protocadherin alpha 2 isoform 1 precursor [Homo sapiens]  1187   0.0  
gi|14165387 protocadherin alpha 11 isoform 2 precursor [Homo sap...  1182   0.0  
gi|9256576 protocadherin alpha 11 isoform 1 precursor [Homo sapi...  1182   0.0  
gi|14165381 protocadherin alpha 10 isoform 2 precursor [Homo sap...  1178   0.0  
gi|9256574 protocadherin alpha 10 isoform 1 precursor [Homo sapi...  1178   0.0  
gi|14165392 protocadherin alpha 12 isoform 2 precursor [Homo sap...  1167   0.0  
gi|9256578 protocadherin alpha 12 isoform 1 precursor [Homo sapi...  1167   0.0  
gi|14165402 protocadherin alpha 1 isoform 3 precursor [Homo sapi...   786   0.0  
gi|14165383 protocadherin alpha 10 isoform 3 precursor [Homo sap...   778   0.0  
gi|14165394 protocadherin alpha 6 isoform 3 precursor [Homo sapi...   774   0.0  
gi|14589916 protocadherin 10 isoform 1 precursor [Homo sapiens]       608   e-174

>gi|14165419 protocadherin alpha 7 isoform 2 precursor [Homo
           sapiens]
          Length = 789

 Score = 1556 bits (4029), Expect = 0.0
 Identities = 789/789 (100%), Positives = 789/789 (100%)

Query: 1   MVCPNGYDPGGRHLLLFIIILAAWEAGRGQLHYSVPEEAKHGNFVGRIAQDLGLELAELV 60
           MVCPNGYDPGGRHLLLFIIILAAWEAGRGQLHYSVPEEAKHGNFVGRIAQDLGLELAELV
Sbjct: 1   MVCPNGYDPGGRHLLLFIIILAAWEAGRGQLHYSVPEEAKHGNFVGRIAQDLGLELAELV 60

Query: 61  PRLFRAVCKFRGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVERPLQVFHVD 120
           PRLFRAVCKFRGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVERPLQVFHVD
Sbjct: 61  PRLFRAVCKFRGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVERPLQVFHVD 120

Query: 121 VEVKDINDNPPVFPATQRNLFIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYFFL 180
           VEVKDINDNPPVFPATQRNLFIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYFFL
Sbjct: 121 VEVKDINDNPPVFPATQRNLFIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYFFL 180

Query: 181 DVPTSNQQVKPLGLVLRKLLDREETPELHLLLTATDGGKPELTGTVQLLITVLDNNDNAP 240
           DVPTSNQQVKPLGLVLRKLLDREETPELHLLLTATDGGKPELTGTVQLLITVLDNNDNAP
Sbjct: 181 DVPTSNQQVKPLGLVLRKLLDREETPELHLLLTATDGGKPELTGTVQLLITVLDNNDNAP 240

Query: 241 VFDRTLYTVKLPENVSIGTLVIHPNASDLDEGLNGDIIYSFSSDVSPDIKSKFHMDPLSG 300
           VFDRTLYTVKLPENVSIGTLVIHPNASDLDEGLNGDIIYSFSSDVSPDIKSKFHMDPLSG
Sbjct: 241 VFDRTLYTVKLPENVSIGTLVIHPNASDLDEGLNGDIIYSFSSDVSPDIKSKFHMDPLSG 300

Query: 301 AITVIGHMDFEESRAHKIPVEAVDKGFPPLAGHCTVLVEVVDVNDNAPQLTLTSLSLPIP 360
           AITVIGHMDFEESRAHKIPVEAVDKGFPPLAGHCTVLVEVVDVNDNAPQLTLTSLSLPIP
Sbjct: 301 AITVIGHMDFEESRAHKIPVEAVDKGFPPLAGHCTVLVEVVDVNDNAPQLTLTSLSLPIP 360

Query: 361 EDAQPGTVITLISVFDRDFGVNGQVTCSLTPRVPFKLVSTFKNYYSLVLDSALDRESVSA 420
           EDAQPGTVITLISVFDRDFGVNGQVTCSLTPRVPFKLVSTFKNYYSLVLDSALDRESVSA
Sbjct: 361 EDAQPGTVITLISVFDRDFGVNGQVTCSLTPRVPFKLVSTFKNYYSLVLDSALDRESVSA 420

Query: 421 YELVVTARDGGSPSLWATASVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAG 480
           YELVVTARDGGSPSLWATASVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAG
Sbjct: 421 YELVVTARDGGSPSLWATASVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAG 480

Query: 481 DADAQKNALVSYSLVELRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDA 540
           DADAQKNALVSYSLVELRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDA
Sbjct: 481 DADAQKNALVSYSLVELRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDA 540

Query: 541 GVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTGGAVRELVPRSVGAGHVVAKVRAVDAD 600
           GVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTGGAVRELVPRSVGAGHVVAKVRAVDAD
Sbjct: 541 GVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTGGAVRELVPRSVGAGHVVAKVRAVDAD 600

Query: 601 SGYNAWLSYELQPVAAGASIPFRVGLYTGEISTTRALDETDAPRHRLLVLVKDHGEPSLT 660
           SGYNAWLSYELQPVAAGASIPFRVGLYTGEISTTRALDETDAPRHRLLVLVKDHGEPSLT
Sbjct: 601 SGYNAWLSYELQPVAAGASIPFRVGLYTGEISTTRALDETDAPRHRLLVLVKDHGEPSLT 660

Query: 661 ATATVLVSLVESGQAPKASSRASLGIAGPETELVDVNVYLIIAICAVSSLLVLTLLLYTA 720
           ATATVLVSLVESGQAPKASSRASLGIAGPETELVDVNVYLIIAICAVSSLLVLTLLLYTA
Sbjct: 661 ATATVLVSLVESGQAPKASSRASLGIAGPETELVDVNVYLIIAICAVSSLLVLTLLLYTA 720

Query: 721 LRCSAPSSEGACSLVKPTLVCSSAVGSWSFSQQRRQRVCSGEGPPKTDLMAFSPSLPQGP 780
           LRCSAPSSEGACSLVKPTLVCSSAVGSWSFSQQRRQRVCSGEGPPKTDLMAFSPSLPQGP
Sbjct: 721 LRCSAPSSEGACSLVKPTLVCSSAVGSWSFSQQRRQRVCSGEGPPKTDLMAFSPSLPQGP 780

Query: 781 SSTDNVSHK 789
           SSTDNVSHK
Sbjct: 781 SSTDNVSHK 789


>gi|9256594 protocadherin alpha 7 isoform 1 precursor [Homo sapiens]
          Length = 937

 Score = 1548 bits (4008), Expect = 0.0
 Identities = 785/785 (100%), Positives = 785/785 (100%)

Query: 1   MVCPNGYDPGGRHLLLFIIILAAWEAGRGQLHYSVPEEAKHGNFVGRIAQDLGLELAELV 60
           MVCPNGYDPGGRHLLLFIIILAAWEAGRGQLHYSVPEEAKHGNFVGRIAQDLGLELAELV
Sbjct: 1   MVCPNGYDPGGRHLLLFIIILAAWEAGRGQLHYSVPEEAKHGNFVGRIAQDLGLELAELV 60

Query: 61  PRLFRAVCKFRGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVERPLQVFHVD 120
           PRLFRAVCKFRGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVERPLQVFHVD
Sbjct: 61  PRLFRAVCKFRGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVERPLQVFHVD 120

Query: 121 VEVKDINDNPPVFPATQRNLFIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYFFL 180
           VEVKDINDNPPVFPATQRNLFIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYFFL
Sbjct: 121 VEVKDINDNPPVFPATQRNLFIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYFFL 180

Query: 181 DVPTSNQQVKPLGLVLRKLLDREETPELHLLLTATDGGKPELTGTVQLLITVLDNNDNAP 240
           DVPTSNQQVKPLGLVLRKLLDREETPELHLLLTATDGGKPELTGTVQLLITVLDNNDNAP
Sbjct: 181 DVPTSNQQVKPLGLVLRKLLDREETPELHLLLTATDGGKPELTGTVQLLITVLDNNDNAP 240

Query: 241 VFDRTLYTVKLPENVSIGTLVIHPNASDLDEGLNGDIIYSFSSDVSPDIKSKFHMDPLSG 300
           VFDRTLYTVKLPENVSIGTLVIHPNASDLDEGLNGDIIYSFSSDVSPDIKSKFHMDPLSG
Sbjct: 241 VFDRTLYTVKLPENVSIGTLVIHPNASDLDEGLNGDIIYSFSSDVSPDIKSKFHMDPLSG 300

Query: 301 AITVIGHMDFEESRAHKIPVEAVDKGFPPLAGHCTVLVEVVDVNDNAPQLTLTSLSLPIP 360
           AITVIGHMDFEESRAHKIPVEAVDKGFPPLAGHCTVLVEVVDVNDNAPQLTLTSLSLPIP
Sbjct: 301 AITVIGHMDFEESRAHKIPVEAVDKGFPPLAGHCTVLVEVVDVNDNAPQLTLTSLSLPIP 360

Query: 361 EDAQPGTVITLISVFDRDFGVNGQVTCSLTPRVPFKLVSTFKNYYSLVLDSALDRESVSA 420
           EDAQPGTVITLISVFDRDFGVNGQVTCSLTPRVPFKLVSTFKNYYSLVLDSALDRESVSA
Sbjct: 361 EDAQPGTVITLISVFDRDFGVNGQVTCSLTPRVPFKLVSTFKNYYSLVLDSALDRESVSA 420

Query: 421 YELVVTARDGGSPSLWATASVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAG 480
           YELVVTARDGGSPSLWATASVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAG
Sbjct: 421 YELVVTARDGGSPSLWATASVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAG 480

Query: 481 DADAQKNALVSYSLVELRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDA 540
           DADAQKNALVSYSLVELRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDA
Sbjct: 481 DADAQKNALVSYSLVELRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDA 540

Query: 541 GVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTGGAVRELVPRSVGAGHVVAKVRAVDAD 600
           GVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTGGAVRELVPRSVGAGHVVAKVRAVDAD
Sbjct: 541 GVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTGGAVRELVPRSVGAGHVVAKVRAVDAD 600

Query: 601 SGYNAWLSYELQPVAAGASIPFRVGLYTGEISTTRALDETDAPRHRLLVLVKDHGEPSLT 660
           SGYNAWLSYELQPVAAGASIPFRVGLYTGEISTTRALDETDAPRHRLLVLVKDHGEPSLT
Sbjct: 601 SGYNAWLSYELQPVAAGASIPFRVGLYTGEISTTRALDETDAPRHRLLVLVKDHGEPSLT 660

Query: 661 ATATVLVSLVESGQAPKASSRASLGIAGPETELVDVNVYLIIAICAVSSLLVLTLLLYTA 720
           ATATVLVSLVESGQAPKASSRASLGIAGPETELVDVNVYLIIAICAVSSLLVLTLLLYTA
Sbjct: 661 ATATVLVSLVESGQAPKASSRASLGIAGPETELVDVNVYLIIAICAVSSLLVLTLLLYTA 720

Query: 721 LRCSAPSSEGACSLVKPTLVCSSAVGSWSFSQQRRQRVCSGEGPPKTDLMAFSPSLPQGP 780
           LRCSAPSSEGACSLVKPTLVCSSAVGSWSFSQQRRQRVCSGEGPPKTDLMAFSPSLPQGP
Sbjct: 721 LRCSAPSSEGACSLVKPTLVCSSAVGSWSFSQQRRQRVCSGEGPPKTDLMAFSPSLPQGP 780

Query: 781 SSTDN 785
           SSTDN
Sbjct: 781 SSTDN 785


>gi|7662068 protocadherin alpha 9 isoform 2 precursor [Homo sapiens]
          Length = 842

 Score = 1358 bits (3515), Expect = 0.0
 Identities = 696/777 (89%), Positives = 721/777 (92%)

Query: 8   DPGGRHLLLFIIILAAWEAGRGQLHYSVPEEAKHGNFVGRIAQDLGLELAELVPRLFRAV 67
           DP G+ LLL ++ILA W  G GQLHYSVPEEA+HG FVGRIAQDLGLELAELVPRLF+  
Sbjct: 8   DPEGQPLLLSLLILAMWVVGSGQLHYSVPEEAEHGTFVGRIAQDLGLELAELVPRLFQLD 67

Query: 68  CKFRGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVERPLQVFHVDVEVKDIN 127
            K RGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIV+RPLQVFHVDVEVKDIN
Sbjct: 68  SKGRGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVDVEVKDIN 127

Query: 128 DNPPVFPATQRNLFIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYFFLDVPTSNQ 187
           DNPPVFPATQ+NLFIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYFFLDVPTSNQ
Sbjct: 128 DNPPVFPATQKNLFIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYFFLDVPTSNQ 187

Query: 188 QVKPLGLVLRKLLDREETPELHLLLTATDGGKPELTGTVQLLITVLDNNDNAPVFDRTLY 247
           QVKPLGLVLRKLLDREETPELHLLLTATDGGKPELTGTVQLLITVLDNNDNAPVFDRTLY
Sbjct: 188 QVKPLGLVLRKLLDREETPELHLLLTATDGGKPELTGTVQLLITVLDNNDNAPVFDRTLY 247

Query: 248 TVKLPENVSIGTLVIHPNASDLDEGLNGDIIYSFSSDVSPDIKSKFHMDPLSGAITVIGH 307
           TVKLPENVSIGTLVIHPNASDLDEGLNGDIIYSFSSDVSPDIKSKFHMDPLSGAITVIGH
Sbjct: 248 TVKLPENVSIGTLVIHPNASDLDEGLNGDIIYSFSSDVSPDIKSKFHMDPLSGAITVIGH 307

Query: 308 MDFEESRAHKIPVEAVDKGFPPLAGHCTVLVEVVDVNDNAPQLTLTSLSLPIPEDAQPGT 367
           MDFEESRAHKIPVEAVDKGFPPLAGHCT+LVEVVDVNDNAPQLT+ +LS+P+ EDAQ GT
Sbjct: 308 MDFEESRAHKIPVEAVDKGFPPLAGHCTLLVEVVDVNDNAPQLTIKTLSVPVKEDAQLGT 367

Query: 368 VITLISVFDRDFGVNGQVTCSLTPRVPFKLVSTFKNYYSLVLDSALDRESVSAYELVVTA 427
           VI LISV D D   NGQVTCSLTP VPFKLVST+KNYYSLVLD ALDRESVSAYELVVTA
Sbjct: 368 VIALISVIDLDADANGQVTCSLTPHVPFKLVSTYKNYYSLVLDRALDRESVSAYELVVTA 427

Query: 428 RDGGSPSLWATASVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAGDADAQKN 487
           RDGGSPSLWATA VSVEVADVNDNAPAFAQ EYTVFVKENNPPGCHIFTVSA DADAQ+N
Sbjct: 428 RDGGSPSLWATARVSVEVADVNDNAPAFAQSEYTVFVKENNPPGCHIFTVSARDADAQEN 487

Query: 488 ALVSYSLVELRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDAGVPPLGS 547
           ALVSYSLVE R+GER+LSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDAGVPPLGS
Sbjct: 488 ALVSYSLVERRLGERSLSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDAGVPPLGS 547

Query: 548 NVTLQVFVLDENDNAPALLAPRVGGTGGAVRELVPRSVGAGHVVAKVRAVDADSGYNAWL 607
           NVTLQVFVLDENDNAPALL PR+ GT GAV E+V RSVGAG VV KVRAVDADSGYNAWL
Sbjct: 548 NVTLQVFVLDENDNAPALLTPRMRGTDGAVSEMVLRSVGAGVVVGKVRAVDADSGYNAWL 607

Query: 608 SYELQPVAAGASIPFRVGLYTGEISTTRALDETDAPRHRLLVLVKDHGEPSLTATATVLV 667
           SYELQP  A ASIPFRVGLYTGEISTTRALDETDAPR RLLVLVKDHGEP+LTATATVLV
Sbjct: 608 SYELQPETASASIPFRVGLYTGEISTTRALDETDAPRQRLLVLVKDHGEPALTATATVLV 667

Query: 668 SLVESGQAPKASSRASLGIAGPETELVDVNVYLIIAICAVSSLLVLTLLLYTALRCSAPS 727
           SLVESGQAPK+SSRAS+G  GPE  LVDVNVYLIIAICAVSSLLVLTLLLYT LRCSA  
Sbjct: 668 SLVESGQAPKSSSRASVGATGPEVTLVDVNVYLIIAICAVSSLLVLTLLLYTVLRCSAMP 727

Query: 728 SEGACSLVKPTLVCSSAVGSWSFSQQRRQRVCSGEGPPKTDLMAFSPSLPQGPSSTD 784
           +EG C+  KPTLVCSSAVGSWS+SQQRRQRVCSGEG  KTDLMAFSP L     ST+
Sbjct: 728 TEGECAPGKPTLVCSSAVGSWSYSQQRRQRVCSGEGKQKTDLMAFSPGLSPCAGSTE 784


>gi|14165425 protocadherin alpha 9 isoform 1 precursor [Homo
           sapiens]
          Length = 950

 Score = 1358 bits (3515), Expect = 0.0
 Identities = 696/777 (89%), Positives = 721/777 (92%)

Query: 8   DPGGRHLLLFIIILAAWEAGRGQLHYSVPEEAKHGNFVGRIAQDLGLELAELVPRLFRAV 67
           DP G+ LLL ++ILA W  G GQLHYSVPEEA+HG FVGRIAQDLGLELAELVPRLF+  
Sbjct: 8   DPEGQPLLLSLLILAMWVVGSGQLHYSVPEEAEHGTFVGRIAQDLGLELAELVPRLFQLD 67

Query: 68  CKFRGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVERPLQVFHVDVEVKDIN 127
            K RGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIV+RPLQVFHVDVEVKDIN
Sbjct: 68  SKGRGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVDVEVKDIN 127

Query: 128 DNPPVFPATQRNLFIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYFFLDVPTSNQ 187
           DNPPVFPATQ+NLFIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYFFLDVPTSNQ
Sbjct: 128 DNPPVFPATQKNLFIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYFFLDVPTSNQ 187

Query: 188 QVKPLGLVLRKLLDREETPELHLLLTATDGGKPELTGTVQLLITVLDNNDNAPVFDRTLY 247
           QVKPLGLVLRKLLDREETPELHLLLTATDGGKPELTGTVQLLITVLDNNDNAPVFDRTLY
Sbjct: 188 QVKPLGLVLRKLLDREETPELHLLLTATDGGKPELTGTVQLLITVLDNNDNAPVFDRTLY 247

Query: 248 TVKLPENVSIGTLVIHPNASDLDEGLNGDIIYSFSSDVSPDIKSKFHMDPLSGAITVIGH 307
           TVKLPENVSIGTLVIHPNASDLDEGLNGDIIYSFSSDVSPDIKSKFHMDPLSGAITVIGH
Sbjct: 248 TVKLPENVSIGTLVIHPNASDLDEGLNGDIIYSFSSDVSPDIKSKFHMDPLSGAITVIGH 307

Query: 308 MDFEESRAHKIPVEAVDKGFPPLAGHCTVLVEVVDVNDNAPQLTLTSLSLPIPEDAQPGT 367
           MDFEESRAHKIPVEAVDKGFPPLAGHCT+LVEVVDVNDNAPQLT+ +LS+P+ EDAQ GT
Sbjct: 308 MDFEESRAHKIPVEAVDKGFPPLAGHCTLLVEVVDVNDNAPQLTIKTLSVPVKEDAQLGT 367

Query: 368 VITLISVFDRDFGVNGQVTCSLTPRVPFKLVSTFKNYYSLVLDSALDRESVSAYELVVTA 427
           VI LISV D D   NGQVTCSLTP VPFKLVST+KNYYSLVLD ALDRESVSAYELVVTA
Sbjct: 368 VIALISVIDLDADANGQVTCSLTPHVPFKLVSTYKNYYSLVLDRALDRESVSAYELVVTA 427

Query: 428 RDGGSPSLWATASVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAGDADAQKN 487
           RDGGSPSLWATA VSVEVADVNDNAPAFAQ EYTVFVKENNPPGCHIFTVSA DADAQ+N
Sbjct: 428 RDGGSPSLWATARVSVEVADVNDNAPAFAQSEYTVFVKENNPPGCHIFTVSARDADAQEN 487

Query: 488 ALVSYSLVELRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDAGVPPLGS 547
           ALVSYSLVE R+GER+LSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDAGVPPLGS
Sbjct: 488 ALVSYSLVERRLGERSLSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDAGVPPLGS 547

Query: 548 NVTLQVFVLDENDNAPALLAPRVGGTGGAVRELVPRSVGAGHVVAKVRAVDADSGYNAWL 607
           NVTLQVFVLDENDNAPALL PR+ GT GAV E+V RSVGAG VV KVRAVDADSGYNAWL
Sbjct: 548 NVTLQVFVLDENDNAPALLTPRMRGTDGAVSEMVLRSVGAGVVVGKVRAVDADSGYNAWL 607

Query: 608 SYELQPVAAGASIPFRVGLYTGEISTTRALDETDAPRHRLLVLVKDHGEPSLTATATVLV 667
           SYELQP  A ASIPFRVGLYTGEISTTRALDETDAPR RLLVLVKDHGEP+LTATATVLV
Sbjct: 608 SYELQPETASASIPFRVGLYTGEISTTRALDETDAPRQRLLVLVKDHGEPALTATATVLV 667

Query: 668 SLVESGQAPKASSRASLGIAGPETELVDVNVYLIIAICAVSSLLVLTLLLYTALRCSAPS 727
           SLVESGQAPK+SSRAS+G  GPE  LVDVNVYLIIAICAVSSLLVLTLLLYT LRCSA  
Sbjct: 668 SLVESGQAPKSSSRASVGATGPEVTLVDVNVYLIIAICAVSSLLVLTLLLYTVLRCSAMP 727

Query: 728 SEGACSLVKPTLVCSSAVGSWSFSQQRRQRVCSGEGPPKTDLMAFSPSLPQGPSSTD 784
           +EG C+  KPTLVCSSAVGSWS+SQQRRQRVCSGEG  KTDLMAFSP L     ST+
Sbjct: 728 TEGECAPGKPTLVCSSAVGSWSYSQQRRQRVCSGEGKQKTDLMAFSPGLSPCAGSTE 784


>gi|14165413 protocadherin alpha 4 isoform 2 precursor [Homo
           sapiens]
          Length = 798

 Score = 1276 bits (3303), Expect = 0.0
 Identities = 654/775 (84%), Positives = 695/775 (89%)

Query: 12  RHLLLFIIILAAWEAGRGQLHYSVPEEAKHGNFVGRIAQDLGLELAELVPRLFRAVCKFR 71
           R LLL +++LAAWEAG GQLHYSV EEAKHG FVGRIAQDLGLELAELVPRLFR   K R
Sbjct: 12  RRLLLLLLLLAAWEAGNGQLHYSVSEEAKHGTFVGRIAQDLGLELAELVPRLFRVASKGR 71

Query: 72  GDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVERPLQVFHVDVEVKDINDNPP 131
           G LLEVNLQNGILFVNSRIDREELC RSAECSIHLEVIV+RPLQVFHVDVEV+DINDNPP
Sbjct: 72  GGLLEVNLQNGILFVNSRIDREELCRRSAECSIHLEVIVDRPLQVFHVDVEVRDINDNPP 131

Query: 132 VFPATQRNLFIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYFFLDVPTSNQQVKP 191
           VFPATQ+NL IAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYF L+ P  ++ VK 
Sbjct: 132 VFPATQKNLSIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYFSLEKPPDDELVKG 191

Query: 192 LGLVLRKLLDREETPELHLLLTATDGGKPELTGTVQLLITVLDNNDNAPVFDRTLYTVKL 251
           LGL+LRK LDREE PE+ L+LTATDGGKPELTGTVQLLITVLD NDNAP FDRT+Y V+L
Sbjct: 192 LGLILRKSLDREEAPEIFLVLTATDGGKPELTGTVQLLITVLDANDNAPAFDRTIYKVRL 251

Query: 252 PENVSIGTLVIHPNASDLDEGLNGDIIYSFSSDVSPDIKSKFHMDPLSGAITVIGHMDFE 311
            ENV  GTLVI  NASDLDEGLNGDI+YSFS+D+SP++KSKFH+DP++G I V G++DFE
Sbjct: 252 LENVPNGTLVIKLNASDLDEGLNGDIVYSFSNDISPNVKSKFHIDPITGQIIVKGYIDFE 311

Query: 312 ESRAHKIPVEAVDKGFPPLAGHCTVLVEVVDVNDNAPQLTLTSLSLPIPEDAQPGTVITL 371
           ES++++I VE +DKG  PL+GHC V+VEV D NDN P L   SLSLPI EDA  GTVI L
Sbjct: 312 ESKSYEIIVEGIDKGQLPLSGHCRVIVEVEDNNDNVPDLEFKSLSLPIREDAPLGTVIAL 371

Query: 372 ISVFDRDFGVNGQVTCSLTPRVPFKLVSTFKNYYSLVLDSALDRESVSAYELVVTARDGG 431
           ISV D+D GVNG VTCSLT  VPFKLVSTFKNYYSLVLDSALDRESVSAYELVVTARDGG
Sbjct: 372 ISVSDKDMGVNGLVTCSLTSHVPFKLVSTFKNYYSLVLDSALDRESVSAYELVVTARDGG 431

Query: 432 SPSLWATASVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAGDADAQKNALVS 491
           SPSLWATASVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSA DADAQ+NALVS
Sbjct: 432 SPSLWATASVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAWDADAQENALVS 491

Query: 492 YSLVELRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDAGVPPLGSNVTL 551
           YSLVE RVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQV+ARDAGVPPLGSNVTL
Sbjct: 492 YSLVERRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVTARDAGVPPLGSNVTL 551

Query: 552 QVFVLDENDNAPALLAPRVGGTGGAVRELVPRSVGAGHVVAKVRAVDADSGYNAWLSYEL 611
           QVFVLDENDNAPALLAPR GGTGGAV ELVP SVG GHVVAKVRAVDADSGYNAWLSYEL
Sbjct: 552 QVFVLDENDNAPALLAPRAGGTGGAVSELVPWSVGVGHVVAKVRAVDADSGYNAWLSYEL 611

Query: 612 QPVAAGASIPFRVGLYTGEISTTRALDETDAPRHRLLVLVKDHGEPSLTATATVLVSLVE 671
           QP   GA IPFRVGLYTGEISTTRALDETDAPRHRLLVLVKDHGEP+LTATATVLVSLVE
Sbjct: 612 QPGTGGARIPFRVGLYTGEISTTRALDETDAPRHRLLVLVKDHGEPALTATATVLVSLVE 671

Query: 672 SGQAPKASSRASLGIAGPETELVDVNVYLIIAICAVSSLLVLTLLLYTALRCSAPSSEGA 731
           SGQAPKASSRA +G  GP+  LVDVNVYLIIAICAVSSLLVLTLLLYTALRCSA  +EGA
Sbjct: 672 SGQAPKASSRALVGAVGPDAALVDVNVYLIIAICAVSSLLVLTLLLYTALRCSALPTEGA 731

Query: 732 CSLVKPTLVCSSAVGSWSFSQQRRQRVCSGEGPPKTDLMAFSPSLPQGPSSTDNV 786
           C+  KPTLVCSSAVGSWS+SQQRR RVCSGEGPPKTDLMAFSPSLP      D +
Sbjct: 732 CAPGKPTLVCSSAVGSWSYSQQRRPRVCSGEGPPKTDLMAFSPSLPDSRDREDQL 786


>gi|9256588 protocadherin alpha 4 isoform 1 precursor [Homo sapiens]
          Length = 947

 Score = 1276 bits (3303), Expect = 0.0
 Identities = 654/775 (84%), Positives = 695/775 (89%)

Query: 12  RHLLLFIIILAAWEAGRGQLHYSVPEEAKHGNFVGRIAQDLGLELAELVPRLFRAVCKFR 71
           R LLL +++LAAWEAG GQLHYSV EEAKHG FVGRIAQDLGLELAELVPRLFR   K R
Sbjct: 12  RRLLLLLLLLAAWEAGNGQLHYSVSEEAKHGTFVGRIAQDLGLELAELVPRLFRVASKGR 71

Query: 72  GDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVERPLQVFHVDVEVKDINDNPP 131
           G LLEVNLQNGILFVNSRIDREELC RSAECSIHLEVIV+RPLQVFHVDVEV+DINDNPP
Sbjct: 72  GGLLEVNLQNGILFVNSRIDREELCRRSAECSIHLEVIVDRPLQVFHVDVEVRDINDNPP 131

Query: 132 VFPATQRNLFIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYFFLDVPTSNQQVKP 191
           VFPATQ+NL IAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYF L+ P  ++ VK 
Sbjct: 132 VFPATQKNLSIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYFSLEKPPDDELVKG 191

Query: 192 LGLVLRKLLDREETPELHLLLTATDGGKPELTGTVQLLITVLDNNDNAPVFDRTLYTVKL 251
           LGL+LRK LDREE PE+ L+LTATDGGKPELTGTVQLLITVLD NDNAP FDRT+Y V+L
Sbjct: 192 LGLILRKSLDREEAPEIFLVLTATDGGKPELTGTVQLLITVLDANDNAPAFDRTIYKVRL 251

Query: 252 PENVSIGTLVIHPNASDLDEGLNGDIIYSFSSDVSPDIKSKFHMDPLSGAITVIGHMDFE 311
            ENV  GTLVI  NASDLDEGLNGDI+YSFS+D+SP++KSKFH+DP++G I V G++DFE
Sbjct: 252 LENVPNGTLVIKLNASDLDEGLNGDIVYSFSNDISPNVKSKFHIDPITGQIIVKGYIDFE 311

Query: 312 ESRAHKIPVEAVDKGFPPLAGHCTVLVEVVDVNDNAPQLTLTSLSLPIPEDAQPGTVITL 371
           ES++++I VE +DKG  PL+GHC V+VEV D NDN P L   SLSLPI EDA  GTVI L
Sbjct: 312 ESKSYEIIVEGIDKGQLPLSGHCRVIVEVEDNNDNVPDLEFKSLSLPIREDAPLGTVIAL 371

Query: 372 ISVFDRDFGVNGQVTCSLTPRVPFKLVSTFKNYYSLVLDSALDRESVSAYELVVTARDGG 431
           ISV D+D GVNG VTCSLT  VPFKLVSTFKNYYSLVLDSALDRESVSAYELVVTARDGG
Sbjct: 372 ISVSDKDMGVNGLVTCSLTSHVPFKLVSTFKNYYSLVLDSALDRESVSAYELVVTARDGG 431

Query: 432 SPSLWATASVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAGDADAQKNALVS 491
           SPSLWATASVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSA DADAQ+NALVS
Sbjct: 432 SPSLWATASVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAWDADAQENALVS 491

Query: 492 YSLVELRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDAGVPPLGSNVTL 551
           YSLVE RVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQV+ARDAGVPPLGSNVTL
Sbjct: 492 YSLVERRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVTARDAGVPPLGSNVTL 551

Query: 552 QVFVLDENDNAPALLAPRVGGTGGAVRELVPRSVGAGHVVAKVRAVDADSGYNAWLSYEL 611
           QVFVLDENDNAPALLAPR GGTGGAV ELVP SVG GHVVAKVRAVDADSGYNAWLSYEL
Sbjct: 552 QVFVLDENDNAPALLAPRAGGTGGAVSELVPWSVGVGHVVAKVRAVDADSGYNAWLSYEL 611

Query: 612 QPVAAGASIPFRVGLYTGEISTTRALDETDAPRHRLLVLVKDHGEPSLTATATVLVSLVE 671
           QP   GA IPFRVGLYTGEISTTRALDETDAPRHRLLVLVKDHGEP+LTATATVLVSLVE
Sbjct: 612 QPGTGGARIPFRVGLYTGEISTTRALDETDAPRHRLLVLVKDHGEPALTATATVLVSLVE 671

Query: 672 SGQAPKASSRASLGIAGPETELVDVNVYLIIAICAVSSLLVLTLLLYTALRCSAPSSEGA 731
           SGQAPKASSRA +G  GP+  LVDVNVYLIIAICAVSSLLVLTLLLYTALRCSA  +EGA
Sbjct: 672 SGQAPKASSRALVGAVGPDAALVDVNVYLIIAICAVSSLLVLTLLLYTALRCSALPTEGA 731

Query: 732 CSLVKPTLVCSSAVGSWSFSQQRRQRVCSGEGPPKTDLMAFSPSLPQGPSSTDNV 786
           C+  KPTLVCSSAVGSWS+SQQRR RVCSGEGPPKTDLMAFSPSLP      D +
Sbjct: 732 CAPGKPTLVCSSAVGSWSYSQQRRPRVCSGEGPPKTDLMAFSPSLPDSRDREDQL 786


>gi|9256586 protocadherin alpha 3 isoform 1 precursor [Homo sapiens]
          Length = 950

 Score = 1230 bits (3183), Expect = 0.0
 Identities = 630/777 (81%), Positives = 685/777 (88%)

Query: 8   DPGGRHLLLFIIILAAWEAGRGQLHYSVPEEAKHGNFVGRIAQDLGLELAELVPRLFRAV 67
           DPG + LLL +++LAA E G GQLHYSV EEAKHG FVGRIAQDLGLELAELVPRLFR  
Sbjct: 8   DPGAQCLLLSLLLLAASEVGSGQLHYSVSEEAKHGTFVGRIAQDLGLELAELVPRLFRVA 67

Query: 68  CKFRGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVERPLQVFHVDVEVKDIN 127
            K  GDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIV+RPLQVFHV+VEVKDIN
Sbjct: 68  SKRHGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVEVEVKDIN 127

Query: 128 DNPPVFPATQRNLFIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYFFLDVPTSNQ 187
           DN PVFP   +NLFI+ESR   SRF LEGASDADIG N+LLTY L   EYF LDV  +++
Sbjct: 128 DNAPVFPMAVKNLFISESRQPGSRFSLEGASDADIGTNSLLTYSLDSTEYFTLDVKRNDE 187

Query: 188 QVKPLGLVLRKLLDREETPELHLLLTATDGGKPELTGTVQLLITVLDNNDNAPVFDRTLY 247
           ++K LGLVL+K L+RE+TP+ +LL+TA DGGKPELTGT QL ITVLD NDNAP F+RT+Y
Sbjct: 188 EIKSLGLVLKKNLNREDTPKHYLLITAIDGGKPELTGTTQLKITVLDVNDNAPAFERTIY 247

Query: 248 TVKLPENVSIGTLVIHPNASDLDEGLNGDIIYSFSSDVSPDIKSKFHMDPLSGAITVIGH 307
            V+L EN   GTLV+  NA+DLDEG+N DI YSF++D+S DI SKFH+DP++G I+V G+
Sbjct: 248 KVRLLENAPNGTLVVTVNATDLDEGVNKDIAYSFNTDMSADILSKFHLDPVNGQISVKGN 307

Query: 308 MDFEESRAHKIPVEAVDKGFPPLAGHCTVLVEVVDVNDNAPQLTLTSLSLPIPEDAQPGT 367
           +DFEES++++I VEA DKG PP++ HCTVL+E+VD+NDN P+L + SLSLP+ ED+   T
Sbjct: 308 IDFEESKSYEIQVEATDKGNPPMSDHCTVLLEIVDINDNVPELVIQSLSLPVLEDSPLST 367

Query: 368 VITLISVFDRDFGVNGQVTCSLTPRVPFKLVSTFKNYYSLVLDSALDRESVSAYELVVTA 427
           VI LISV DRD GVNGQVTCSLTP VPFKLVSTFKNYYSLVLDS LDRESVSAYELVVTA
Sbjct: 368 VIALISVSDRDSGVNGQVTCSLTPHVPFKLVSTFKNYYSLVLDSPLDRESVSAYELVVTA 427

Query: 428 RDGGSPSLWATASVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAGDADAQKN 487
           RDGGSPSLWATASVSVEVADVNDNAPAF+Q EYTVFVKENNPPGCHIFTVSA DADAQ+N
Sbjct: 428 RDGGSPSLWATASVSVEVADVNDNAPAFSQSEYTVFVKENNPPGCHIFTVSARDADAQEN 487

Query: 488 ALVSYSLVELRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDAGVPPLGS 547
           ALVSYSLVE RVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDAGVPPLGS
Sbjct: 488 ALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDAGVPPLGS 547

Query: 548 NVTLQVFVLDENDNAPALLAPRVGGTGGAVRELVPRSVGAGHVVAKVRAVDADSGYNAWL 607
           NVTLQVFVLDENDNAPALL PRVGG GGAV ELVPRSVGAGHVVAKVRAVDADSGYNAWL
Sbjct: 548 NVTLQVFVLDENDNAPALLMPRVGGIGGAVSELVPRSVGAGHVVAKVRAVDADSGYNAWL 607

Query: 608 SYELQPVAAGASIPFRVGLYTGEISTTRALDETDAPRHRLLVLVKDHGEPSLTATATVLV 667
           SYELQP   GA IPFRVGLYTGEISTTRALDE DAPRHRLLVLVKDHGEPSLTATATVLV
Sbjct: 608 SYELQPGTGGARIPFRVGLYTGEISTTRALDEVDAPRHRLLVLVKDHGEPSLTATATVLV 667

Query: 668 SLVESGQAPKASSRASLGIAGPETELVDVNVYLIIAICAVSSLLVLTLLLYTALRCSAPS 727
           SLVESGQAPKASS+AS G  GPE  LVDVNVYLI+AICAVSSLLVLTLLLYTALRCSAP 
Sbjct: 668 SLVESGQAPKASSQASAGATGPEAALVDVNVYLIVAICAVSSLLVLTLLLYTALRCSAPP 727

Query: 728 SEGACSLVKPTLVCSSAVGSWSFSQQRRQRVCSGEGPPKTDLMAFSPSLPQGPSSTD 784
           +EG C   KPTLVCSSAVGSWS+SQQR+QRVCSGEG PKTDLMAFSPSLP  P S D
Sbjct: 728 TEGDCGPGKPTLVCSSAVGSWSYSQQRQQRVCSGEGLPKTDLMAFSPSLPPCPISRD 784


>gi|14165410 protocadherin alpha 3 isoform 2 precursor [Homo
           sapiens]
          Length = 824

 Score = 1230 bits (3183), Expect = 0.0
 Identities = 630/777 (81%), Positives = 685/777 (88%)

Query: 8   DPGGRHLLLFIIILAAWEAGRGQLHYSVPEEAKHGNFVGRIAQDLGLELAELVPRLFRAV 67
           DPG + LLL +++LAA E G GQLHYSV EEAKHG FVGRIAQDLGLELAELVPRLFR  
Sbjct: 8   DPGAQCLLLSLLLLAASEVGSGQLHYSVSEEAKHGTFVGRIAQDLGLELAELVPRLFRVA 67

Query: 68  CKFRGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVERPLQVFHVDVEVKDIN 127
            K  GDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIV+RPLQVFHV+VEVKDIN
Sbjct: 68  SKRHGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVEVEVKDIN 127

Query: 128 DNPPVFPATQRNLFIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYFFLDVPTSNQ 187
           DN PVFP   +NLFI+ESR   SRF LEGASDADIG N+LLTY L   EYF LDV  +++
Sbjct: 128 DNAPVFPMAVKNLFISESRQPGSRFSLEGASDADIGTNSLLTYSLDSTEYFTLDVKRNDE 187

Query: 188 QVKPLGLVLRKLLDREETPELHLLLTATDGGKPELTGTVQLLITVLDNNDNAPVFDRTLY 247
           ++K LGLVL+K L+RE+TP+ +LL+TA DGGKPELTGT QL ITVLD NDNAP F+RT+Y
Sbjct: 188 EIKSLGLVLKKNLNREDTPKHYLLITAIDGGKPELTGTTQLKITVLDVNDNAPAFERTIY 247

Query: 248 TVKLPENVSIGTLVIHPNASDLDEGLNGDIIYSFSSDVSPDIKSKFHMDPLSGAITVIGH 307
            V+L EN   GTLV+  NA+DLDEG+N DI YSF++D+S DI SKFH+DP++G I+V G+
Sbjct: 248 KVRLLENAPNGTLVVTVNATDLDEGVNKDIAYSFNTDMSADILSKFHLDPVNGQISVKGN 307

Query: 308 MDFEESRAHKIPVEAVDKGFPPLAGHCTVLVEVVDVNDNAPQLTLTSLSLPIPEDAQPGT 367
           +DFEES++++I VEA DKG PP++ HCTVL+E+VD+NDN P+L + SLSLP+ ED+   T
Sbjct: 308 IDFEESKSYEIQVEATDKGNPPMSDHCTVLLEIVDINDNVPELVIQSLSLPVLEDSPLST 367

Query: 368 VITLISVFDRDFGVNGQVTCSLTPRVPFKLVSTFKNYYSLVLDSALDRESVSAYELVVTA 427
           VI LISV DRD GVNGQVTCSLTP VPFKLVSTFKNYYSLVLDS LDRESVSAYELVVTA
Sbjct: 368 VIALISVSDRDSGVNGQVTCSLTPHVPFKLVSTFKNYYSLVLDSPLDRESVSAYELVVTA 427

Query: 428 RDGGSPSLWATASVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAGDADAQKN 487
           RDGGSPSLWATASVSVEVADVNDNAPAF+Q EYTVFVKENNPPGCHIFTVSA DADAQ+N
Sbjct: 428 RDGGSPSLWATASVSVEVADVNDNAPAFSQSEYTVFVKENNPPGCHIFTVSARDADAQEN 487

Query: 488 ALVSYSLVELRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDAGVPPLGS 547
           ALVSYSLVE RVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDAGVPPLGS
Sbjct: 488 ALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDAGVPPLGS 547

Query: 548 NVTLQVFVLDENDNAPALLAPRVGGTGGAVRELVPRSVGAGHVVAKVRAVDADSGYNAWL 607
           NVTLQVFVLDENDNAPALL PRVGG GGAV ELVPRSVGAGHVVAKVRAVDADSGYNAWL
Sbjct: 548 NVTLQVFVLDENDNAPALLMPRVGGIGGAVSELVPRSVGAGHVVAKVRAVDADSGYNAWL 607

Query: 608 SYELQPVAAGASIPFRVGLYTGEISTTRALDETDAPRHRLLVLVKDHGEPSLTATATVLV 667
           SYELQP   GA IPFRVGLYTGEISTTRALDE DAPRHRLLVLVKDHGEPSLTATATVLV
Sbjct: 608 SYELQPGTGGARIPFRVGLYTGEISTTRALDEVDAPRHRLLVLVKDHGEPSLTATATVLV 667

Query: 668 SLVESGQAPKASSRASLGIAGPETELVDVNVYLIIAICAVSSLLVLTLLLYTALRCSAPS 727
           SLVESGQAPKASS+AS G  GPE  LVDVNVYLI+AICAVSSLLVLTLLLYTALRCSAP 
Sbjct: 668 SLVESGQAPKASSQASAGATGPEAALVDVNVYLIVAICAVSSLLVLTLLLYTALRCSAPP 727

Query: 728 SEGACSLVKPTLVCSSAVGSWSFSQQRRQRVCSGEGPPKTDLMAFSPSLPQGPSSTD 784
           +EG C   KPTLVCSSAVGSWS+SQQR+QRVCSGEG PKTDLMAFSPSLP  P S D
Sbjct: 728 TEGDCGPGKPTLVCSSAVGSWSYSQQRQQRVCSGEGLPKTDLMAFSPSLPPCPISRD 784


>gi|14165416 protocadherin alpha 5 isoform 2 precursor [Homo
           sapiens]
          Length = 816

 Score = 1202 bits (3110), Expect = 0.0
 Identities = 617/777 (79%), Positives = 671/777 (86%)

Query: 11  GRHLLLFIIILAAWEAGRGQLHYSVPEEAKHGNFVGRIAQDLGLELAELVPRLFRAVCKF 70
           G  LLL  ++LA W+AG GQLHYS+PEEAKHG FVGRIAQDLGLELAELVPRLFR   K 
Sbjct: 10  GSRLLLLWLLLAYWKAGSGQLHYSIPEEAKHGTFVGRIAQDLGLELAELVPRLFRVASKG 69

Query: 71  RGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVERPLQVFHVDVEVKDINDNP 130
           RGDLLEVNLQNGILFVNSRIDREELC R AECSIHLEVIV+RPLQVFHV+V VKDINDNP
Sbjct: 70  RGDLLEVNLQNGILFVNSRIDREELCRRRAECSIHLEVIVDRPLQVFHVEVAVKDINDNP 129

Query: 131 PVFPATQRNLFIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYFFLDVPTSNQQVK 190
           P F   ++ LFI ESR  DSRFPLEGASD DIG NA L YRL+PNEYF LDV T+ ++  
Sbjct: 130 PRFSRQEQRLFILESRMPDSRFPLEGASDLDIGANAQLRYRLNPNEYFDLDVKTNEEETN 189

Query: 191 PLGLVLRKLLDREETPELHLLLTATDGGKPELTGTVQLLITVLDNNDNAPVFDRTLYTVK 250
            L LVLRK LDREET E  LL+ ATDGGKPELTGTVQLLI VLD NDNAP FD+++Y V+
Sbjct: 190 FLELVLRKSLDREETQEHRLLVIATDGGKPELTGTVQLLINVLDANDNAPEFDKSIYNVR 249

Query: 251 LPENVSIGTLVIHPNASDLDEGLNGDIIYSFSSDVSPDIKSKFHMDPLSGAITVIGHMDF 310
           L EN   GTLVI  NASD DEG+N +I+Y FS+ V  D+KSKF ++  +G I V G +D+
Sbjct: 250 LLENAPSGTLVIKLNASDADEGINKEIVYFFSNLVLDDVKSKFIINSNTGEIKVNGELDY 309

Query: 311 EESRAHKIPVEAVDKGFPPLAGHCTVLVEVVDVNDNAPQLTLTSLSLPIPEDAQPGTVIT 370
           E+  +++I ++A+DK   PL+GHC V+V+++DVNDN P++ +T+L LP+ EDA   TVI 
Sbjct: 310 EDYNSYEINIDAMDKSTFPLSGHCKVVVKLLDVNDNTPEMAITTLFLPVKEDAPLSTVIA 369

Query: 371 LISVFDRDFGVNGQVTCSLTPRVPFKLVSTFKNYYSLVLDSALDRESVSAYELVVTARDG 430
           LISV DRD G NGQVTCSL P VPFKLVSTFKNYYSLVLDSALDRESVS YELVVTARDG
Sbjct: 370 LISVSDRDSGANGQVTCSLMPHVPFKLVSTFKNYYSLVLDSALDRESVSVYELVVTARDG 429

Query: 431 GSPSLWATASVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAGDADAQKNALV 490
           GSPSLWATASVSVEVADVNDNAPAFAQP+YTVFVKENNPPGCHIFTVSA DADAQ+NALV
Sbjct: 430 GSPSLWATASVSVEVADVNDNAPAFAQPQYTVFVKENNPPGCHIFTVSARDADAQENALV 489

Query: 491 SYSLVELRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDAGVPPLGSNVT 550
           SYSLVE RVGER LSSYVSVHAESGKVYALQPLDHEE+ELLQFQVSARDAGVPPLGSNVT
Sbjct: 490 SYSLVERRVGERPLSSYVSVHAESGKVYALQPLDHEEVELLQFQVSARDAGVPPLGSNVT 549

Query: 551 LQVFVLDENDNAPALLAPRVGGTGGAVRELVPRSVGAGHVVAKVRAVDADSGYNAWLSYE 610
           LQVFVLDENDNAPALL PRVGGTGGAV ELVPRSVGAGHVVAKVRAVD DSGYNAWLSYE
Sbjct: 550 LQVFVLDENDNAPALLVPRVGGTGGAVSELVPRSVGAGHVVAKVRAVDPDSGYNAWLSYE 609

Query: 611 LQPVAAGASIPFRVGLYTGEISTTRALDETDAPRHRLLVLVKDHGEPSLTATATVLVSLV 670
           LQP    A IPFRVGLYTGEISTTR+LDET+APRHRLLVLVKDHGEP LTATATVLVSLV
Sbjct: 610 LQPAPGSARIPFRVGLYTGEISTTRSLDETEAPRHRLLVLVKDHGEPPLTATATVLVSLV 669

Query: 671 ESGQAPKASSRASLGIAGPETELVDVNVYLIIAICAVSSLLVLTLLLYTALRCSAPSSEG 730
           ESGQAPKASSRAS G  GPE  LVDVNVYLIIAICAVSSLLVLTLLLYTALRCSA  +E 
Sbjct: 670 ESGQAPKASSRASAGAVGPEAALVDVNVYLIIAICAVSSLLVLTLLLYTALRCSAQPTEA 729

Query: 731 ACSLVKPTLVCSSAVGSWSFSQQRRQRVCSGEGPPKTDLMAFSPSLPQGPSSTDNVS 787
            C+  KPTL+CSSAVGSWS+SQQRRQRVCSGE PPKTDLMAFSPSLPQGP+STDNVS
Sbjct: 730 VCTRGKPTLLCSSAVGSWSYSQQRRQRVCSGEAPPKTDLMAFSPSLPQGPTSTDNVS 786


>gi|14165397 protocadherin alpha 13 isoform 2 precursor [Homo
           sapiens]
          Length = 807

 Score = 1201 bits (3107), Expect = 0.0
 Identities = 615/781 (78%), Positives = 671/781 (85%)

Query: 9   PGGRHLLLFIIILAAWEAGRGQLHYSVPEEAKHGNFVGRIAQDLGLELAELVPRLFRAVC 68
           P  R LLL+++ILAAWE G GQLHYSVPEEAKHG FVGRIAQDLGLELAELVPRLFR   
Sbjct: 9   PRPRQLLLWLLILAAWETGSGQLHYSVPEEAKHGTFVGRIAQDLGLELAELVPRLFRVAS 68

Query: 69  KFRGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVERPLQVFHVDVEVKDIND 128
           K  GDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIV+RPLQVFHV+V+V+DIND
Sbjct: 69  KRHGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVEVKVRDIND 128

Query: 129 NPPVFPATQRNLFIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYFFLDVPTSNQQ 188
           NPP+FP +++ + IAESRP ++RFPL+GASDADIG N+ LTYRL PN+YF LD   S +Q
Sbjct: 129 NPPIFPESKKRIIIAESRPPETRFPLDGASDADIGVNSALTYRLDPNDYFTLDAQNSLEQ 188

Query: 189 VKPLGLVLRKLLDREETPELHLLLTATDGGKPELTGTVQLLITVLDNNDNAPVFDRTLYT 248
           +  L LVLRK LDREE  E  LLLTA+DGGKPELTGTVQLLIT+LD NDNAP F +++Y 
Sbjct: 189 MSSLSLVLRKTLDREEIQEHSLLLTASDGGKPELTGTVQLLITILDVNDNAPEFYQSVYK 248

Query: 249 VKLPENVSIGTLVIHPNASDLDEGLNGDIIYSFSSDVSPDIKSKFHMDPLSGAITVIGHM 308
           V + EN   GTLVI  NA+D D+G NGDI+YSF   V P +   F ++P +G I   G +
Sbjct: 249 VTVLENAFNGTLVIKLNATDPDDGTNGDIVYSFRRPVWPAVVYAFTINPNNGEIRTKGKL 308

Query: 309 DFEESRAHKIPVEAVDKGFPPLAGHCTVLVEVVDVNDNAPQLTLTSLSLPIPEDAQPGTV 368
           DFEE + ++I VEAVDKG  P+AGHCT+LVEV+DVNDNAP++T+TSLSLPI ED QP  +
Sbjct: 309 DFEEKKLYEISVEAVDKGNIPMAGHCTLLVEVLDVNDNAPEVTITSLSLPIREDTQPSAI 368

Query: 369 ITLISVFDRDFGVNGQVTCSLTPRVPFKLVSTFKNYYSLVLDSALDRESVSAYELVVTAR 428
           I LISV DRD G NGQVTC+LTP VPFKLVST+KNYYSLVLDSALDRESVSAYELVVTAR
Sbjct: 369 IALISVSDRDSGSNGQVTCTLTPHVPFKLVSTYKNYYSLVLDSALDRESVSAYELVVTAR 428

Query: 429 DGGSPSLWATASVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAGDADAQKNA 488
           DGGSPSLWATASVSV VADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSA DADAQ+NA
Sbjct: 429 DGGSPSLWATASVSVGVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAQDADAQENA 488

Query: 489 LVSYSLVELRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDAGVPPLGSN 548
           LVSYSLVE RVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARD+GVPPLGSN
Sbjct: 489 LVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDSGVPPLGSN 548

Query: 549 VTLQVFVLDENDNAPALLAPRVGGTGGAVRELVPRSVGAGHVVAKVRAVDADSGYNAWLS 608
           VTLQVFVLDENDNAPALL P  G  GG V EL+PRSVGAGHVVAKVRAVDADSGYNAWLS
Sbjct: 549 VTLQVFVLDENDNAPALLTPGAGSAGGTVSELMPRSVGAGHVVAKVRAVDADSGYNAWLS 608

Query: 609 YELQPVAAGASIPFRVGLYTGEISTTRALDETDAPRHRLLVLVKDHGEPSLTATATVLVS 668
           YELQ  A GA IPFRVGLYTGEISTTR LDE DAP HRLLVLVKDHGEP+LTATATVL+S
Sbjct: 609 YELQLAAVGARIPFRVGLYTGEISTTRPLDEVDAPHHRLLVLVKDHGEPALTATATVLLS 668

Query: 669 LVESGQAPKASSRASLGIAGPETELVDVNVYLIIAICAVSSLLVLTLLLYTALRCSAPSS 728
           LVESGQAP+ASSRAS G  GPE  LVDVNVYLIIAICAVSSLLVLTLLLYTALRCSAP +
Sbjct: 669 LVESGQAPQASSRASAGAVGPEAALVDVNVYLIIAICAVSSLLVLTLLLYTALRCSAPPT 728

Query: 729 EGACSLVKPTLVCSSAVGSWSFSQQRRQRVCSGEGPPKTDLMAFSPSLPQGPSSTDNVSH 788
           EGAC+  KPTLVCSSA GSWS+SQQRR RVCSGEGP KTDLMAFSPSLP    S +    
Sbjct: 729 EGACAPGKPTLVCSSAAGSWSYSQQRRPRVCSGEGPHKTDLMAFSPSLPPCLGSAEGTGQ 788

Query: 789 K 789
           +
Sbjct: 789 R 789


>gi|9256580 protocadherin alpha 13 isoform 1 precursor [Homo
           sapiens]
          Length = 950

 Score = 1201 bits (3107), Expect = 0.0
 Identities = 615/781 (78%), Positives = 671/781 (85%)

Query: 9   PGGRHLLLFIIILAAWEAGRGQLHYSVPEEAKHGNFVGRIAQDLGLELAELVPRLFRAVC 68
           P  R LLL+++ILAAWE G GQLHYSVPEEAKHG FVGRIAQDLGLELAELVPRLFR   
Sbjct: 9   PRPRQLLLWLLILAAWETGSGQLHYSVPEEAKHGTFVGRIAQDLGLELAELVPRLFRVAS 68

Query: 69  KFRGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVERPLQVFHVDVEVKDIND 128
           K  GDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIV+RPLQVFHV+V+V+DIND
Sbjct: 69  KRHGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVEVKVRDIND 128

Query: 129 NPPVFPATQRNLFIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYFFLDVPTSNQQ 188
           NPP+FP +++ + IAESRP ++RFPL+GASDADIG N+ LTYRL PN+YF LD   S +Q
Sbjct: 129 NPPIFPESKKRIIIAESRPPETRFPLDGASDADIGVNSALTYRLDPNDYFTLDAQNSLEQ 188

Query: 189 VKPLGLVLRKLLDREETPELHLLLTATDGGKPELTGTVQLLITVLDNNDNAPVFDRTLYT 248
           +  L LVLRK LDREE  E  LLLTA+DGGKPELTGTVQLLIT+LD NDNAP F +++Y 
Sbjct: 189 MSSLSLVLRKTLDREEIQEHSLLLTASDGGKPELTGTVQLLITILDVNDNAPEFYQSVYK 248

Query: 249 VKLPENVSIGTLVIHPNASDLDEGLNGDIIYSFSSDVSPDIKSKFHMDPLSGAITVIGHM 308
           V + EN   GTLVI  NA+D D+G NGDI+YSF   V P +   F ++P +G I   G +
Sbjct: 249 VTVLENAFNGTLVIKLNATDPDDGTNGDIVYSFRRPVWPAVVYAFTINPNNGEIRTKGKL 308

Query: 309 DFEESRAHKIPVEAVDKGFPPLAGHCTVLVEVVDVNDNAPQLTLTSLSLPIPEDAQPGTV 368
           DFEE + ++I VEAVDKG  P+AGHCT+LVEV+DVNDNAP++T+TSLSLPI ED QP  +
Sbjct: 309 DFEEKKLYEISVEAVDKGNIPMAGHCTLLVEVLDVNDNAPEVTITSLSLPIREDTQPSAI 368

Query: 369 ITLISVFDRDFGVNGQVTCSLTPRVPFKLVSTFKNYYSLVLDSALDRESVSAYELVVTAR 428
           I LISV DRD G NGQVTC+LTP VPFKLVST+KNYYSLVLDSALDRESVSAYELVVTAR
Sbjct: 369 IALISVSDRDSGSNGQVTCTLTPHVPFKLVSTYKNYYSLVLDSALDRESVSAYELVVTAR 428

Query: 429 DGGSPSLWATASVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAGDADAQKNA 488
           DGGSPSLWATASVSV VADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSA DADAQ+NA
Sbjct: 429 DGGSPSLWATASVSVGVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAQDADAQENA 488

Query: 489 LVSYSLVELRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDAGVPPLGSN 548
           LVSYSLVE RVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARD+GVPPLGSN
Sbjct: 489 LVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDSGVPPLGSN 548

Query: 549 VTLQVFVLDENDNAPALLAPRVGGTGGAVRELVPRSVGAGHVVAKVRAVDADSGYNAWLS 608
           VTLQVFVLDENDNAPALL P  G  GG V EL+PRSVGAGHVVAKVRAVDADSGYNAWLS
Sbjct: 549 VTLQVFVLDENDNAPALLTPGAGSAGGTVSELMPRSVGAGHVVAKVRAVDADSGYNAWLS 608

Query: 609 YELQPVAAGASIPFRVGLYTGEISTTRALDETDAPRHRLLVLVKDHGEPSLTATATVLVS 668
           YELQ  A GA IPFRVGLYTGEISTTR LDE DAP HRLLVLVKDHGEP+LTATATVL+S
Sbjct: 609 YELQLAAVGARIPFRVGLYTGEISTTRPLDEVDAPHHRLLVLVKDHGEPALTATATVLLS 668

Query: 669 LVESGQAPKASSRASLGIAGPETELVDVNVYLIIAICAVSSLLVLTLLLYTALRCSAPSS 728
           LVESGQAP+ASSRAS G  GPE  LVDVNVYLIIAICAVSSLLVLTLLLYTALRCSAP +
Sbjct: 669 LVESGQAPQASSRASAGAVGPEAALVDVNVYLIIAICAVSSLLVLTLLLYTALRCSAPPT 728

Query: 729 EGACSLVKPTLVCSSAVGSWSFSQQRRQRVCSGEGPPKTDLMAFSPSLPQGPSSTDNVSH 788
           EGAC+  KPTLVCSSA GSWS+SQQRR RVCSGEGP KTDLMAFSPSLP    S +    
Sbjct: 729 EGACAPGKPTLVCSSAAGSWSYSQQRRPRVCSGEGPHKTDLMAFSPSLPPCLGSAEGTGQ 788

Query: 789 K 789
           +
Sbjct: 789 R 789


>gi|14165390 protocadherin alpha 6 isoform 2 precursor [Homo
           sapiens]
          Length = 803

 Score = 1200 bits (3105), Expect = 0.0
 Identities = 614/771 (79%), Positives = 672/771 (87%)

Query: 10  GGRHLLLFIIILAAWEAGRGQLHYSVPEEAKHGNFVGRIAQDLGLELAELVPRLFRAVCK 69
           G + LLL +++LAAW+ G GQLHYSVPEEAKHG FVGRIAQDLGLELAELVPRLFR   K
Sbjct: 10  GKQCLLLPLLLLAAWKVGSGQLHYSVPEEAKHGTFVGRIAQDLGLELAELVPRLFRMASK 69

Query: 70  FRGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVERPLQVFHVDVEVKDINDN 129
            R DLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIV+RPLQVFHVDVEV+DINDN
Sbjct: 70  DREDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVDVEVRDINDN 129

Query: 130 PPVFPATQRNLFIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYFFLDVPTSNQQV 189
           PP+FP  ++ + I ESR  DS FPLEGASDAD+G N++LTY+LS +EYF LDV  ++   
Sbjct: 130 PPLFPVEEQRVLIYESRLPDSVFPLEGASDADVGSNSILTYKLSSSEYFGLDVKINSDDN 189

Query: 190 KPLGLVLRKLLDREETPELHLLLTATDGGKPELTGTVQLLITVLDNNDNAPVFDRTLYTV 249
           K +GL+L+K LDREE P  +L LTATDGGKPELTGTVQLL+TVLD NDNAP F+++ Y V
Sbjct: 190 KQIGLLLKKSLDREEAPAHNLFLTATDGGKPELTGTVQLLVTVLDVNDNAPTFEQSEYEV 249

Query: 250 KLPENVSIGTLVIHPNASDLDEGLNGDIIYSFSSDVSPDIKSKFHMDPLSGAITVIGHMD 309
           ++ EN   GT VI  NASD DEG NG I YSF+S V+  +   F +D  +G I + G++D
Sbjct: 250 RIFENADNGTTVIRLNASDRDEGANGAISYSFNSLVAAMVIDHFSIDRNTGEIVIRGNLD 309

Query: 310 FEESRAHKIPVEAVDKGFPPLAGHCTVLVEVVDVNDNAPQLTLTSLSLPIPEDAQPGTVI 369
           FE+   +KI ++A DKG PP+AGHCTVLV ++D NDN P++ LTSLSLP+ EDAQ GTVI
Sbjct: 310 FEQENLYKILIDATDKGHPPMAGHCTVLVRILDKNDNVPEIALTSLSLPVREDAQFGTVI 369

Query: 370 TLISVFDRDFGVNGQVTCSLTPRVPFKLVSTFKNYYSLVLDSALDRESVSAYELVVTARD 429
            LISV D D G NGQV CSLTP VPFKLVSTFKNYYSLVLDSALDRESVSAYELVVTARD
Sbjct: 370 ALISVNDLDSGANGQVNCSLTPHVPFKLVSTFKNYYSLVLDSALDRESVSAYELVVTARD 429

Query: 430 GGSPSLWATASVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAGDADAQKNAL 489
           GGSPSLWATAS+SVEVAD+NDNAPAFAQPEYTVFVKENNPPGCHIFTVSA DADAQ+NAL
Sbjct: 430 GGSPSLWATASLSVEVADMNDNAPAFAQPEYTVFVKENNPPGCHIFTVSARDADAQENAL 489

Query: 490 VSYSLVELRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDAGVPPLGSNV 549
           VSYSLVE RVGERALSSY+SVHAESGKVYALQPLDHEELELLQFQVSARDAGVPPLGSNV
Sbjct: 490 VSYSLVERRVGERALSSYISVHAESGKVYALQPLDHEELELLQFQVSARDAGVPPLGSNV 549

Query: 550 TLQVFVLDENDNAPALLAPRVGGTGGAVRELVPRSVGAGHVVAKVRAVDADSGYNAWLSY 609
           TLQVFVLDENDNAPALLAPRVGGTGGAV ELVPRS+GAG VVAKVRAVDADSGYNAWLSY
Sbjct: 550 TLQVFVLDENDNAPALLAPRVGGTGGAVSELVPRSLGAGQVVAKVRAVDADSGYNAWLSY 609

Query: 610 ELQPVAAGASIPFRVGLYTGEISTTRALDETDAPRHRLLVLVKDHGEPSLTATATVLVSL 669
           ELQP A+ A  PFRVGLYTGEISTTR LDE D+PRHRLLVLVKDHGEP+LTATATVLVSL
Sbjct: 610 ELQPPASSARFPFRVGLYTGEISTTRVLDEADSPRHRLLVLVKDHGEPALTATATVLVSL 669

Query: 670 VESGQAPKASSRASLGIAGPETELVDVNVYLIIAICAVSSLLVLTLLLYTALRCSAPSSE 729
           VESGQAPKASSRAS+G AGPE  LVDVNVYLIIAICAVSSLLVLTLLLYTALRCSAP +E
Sbjct: 670 VESGQAPKASSRASVGAAGPEAALVDVNVYLIIAICAVSSLLVLTLLLYTALRCSAPPTE 729

Query: 730 GACSLVKPTLVCSSAVGSWSFSQQRRQRVCSGEGPPKTDLMAFSPSLPQGP 780
           GAC+  KPTLVCSSAVGSWS+SQQRRQRVCSGEGPPK DLMAFSPSL   P
Sbjct: 730 GACTADKPTLVCSSAVGSWSYSQQRRQRVCSGEGPPKMDLMAFSPSLSPCP 780


>gi|9256592 protocadherin alpha 6 isoform 1 precursor [Homo sapiens]
          Length = 950

 Score = 1200 bits (3105), Expect = 0.0
 Identities = 614/771 (79%), Positives = 672/771 (87%)

Query: 10  GGRHLLLFIIILAAWEAGRGQLHYSVPEEAKHGNFVGRIAQDLGLELAELVPRLFRAVCK 69
           G + LLL +++LAAW+ G GQLHYSVPEEAKHG FVGRIAQDLGLELAELVPRLFR   K
Sbjct: 10  GKQCLLLPLLLLAAWKVGSGQLHYSVPEEAKHGTFVGRIAQDLGLELAELVPRLFRMASK 69

Query: 70  FRGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVERPLQVFHVDVEVKDINDN 129
            R DLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIV+RPLQVFHVDVEV+DINDN
Sbjct: 70  DREDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVDVEVRDINDN 129

Query: 130 PPVFPATQRNLFIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYFFLDVPTSNQQV 189
           PP+FP  ++ + I ESR  DS FPLEGASDAD+G N++LTY+LS +EYF LDV  ++   
Sbjct: 130 PPLFPVEEQRVLIYESRLPDSVFPLEGASDADVGSNSILTYKLSSSEYFGLDVKINSDDN 189

Query: 190 KPLGLVLRKLLDREETPELHLLLTATDGGKPELTGTVQLLITVLDNNDNAPVFDRTLYTV 249
           K +GL+L+K LDREE P  +L LTATDGGKPELTGTVQLL+TVLD NDNAP F+++ Y V
Sbjct: 190 KQIGLLLKKSLDREEAPAHNLFLTATDGGKPELTGTVQLLVTVLDVNDNAPTFEQSEYEV 249

Query: 250 KLPENVSIGTLVIHPNASDLDEGLNGDIIYSFSSDVSPDIKSKFHMDPLSGAITVIGHMD 309
           ++ EN   GT VI  NASD DEG NG I YSF+S V+  +   F +D  +G I + G++D
Sbjct: 250 RIFENADNGTTVIRLNASDRDEGANGAISYSFNSLVAAMVIDHFSIDRNTGEIVIRGNLD 309

Query: 310 FEESRAHKIPVEAVDKGFPPLAGHCTVLVEVVDVNDNAPQLTLTSLSLPIPEDAQPGTVI 369
           FE+   +KI ++A DKG PP+AGHCTVLV ++D NDN P++ LTSLSLP+ EDAQ GTVI
Sbjct: 310 FEQENLYKILIDATDKGHPPMAGHCTVLVRILDKNDNVPEIALTSLSLPVREDAQFGTVI 369

Query: 370 TLISVFDRDFGVNGQVTCSLTPRVPFKLVSTFKNYYSLVLDSALDRESVSAYELVVTARD 429
            LISV D D G NGQV CSLTP VPFKLVSTFKNYYSLVLDSALDRESVSAYELVVTARD
Sbjct: 370 ALISVNDLDSGANGQVNCSLTPHVPFKLVSTFKNYYSLVLDSALDRESVSAYELVVTARD 429

Query: 430 GGSPSLWATASVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAGDADAQKNAL 489
           GGSPSLWATAS+SVEVAD+NDNAPAFAQPEYTVFVKENNPPGCHIFTVSA DADAQ+NAL
Sbjct: 430 GGSPSLWATASLSVEVADMNDNAPAFAQPEYTVFVKENNPPGCHIFTVSARDADAQENAL 489

Query: 490 VSYSLVELRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDAGVPPLGSNV 549
           VSYSLVE RVGERALSSY+SVHAESGKVYALQPLDHEELELLQFQVSARDAGVPPLGSNV
Sbjct: 490 VSYSLVERRVGERALSSYISVHAESGKVYALQPLDHEELELLQFQVSARDAGVPPLGSNV 549

Query: 550 TLQVFVLDENDNAPALLAPRVGGTGGAVRELVPRSVGAGHVVAKVRAVDADSGYNAWLSY 609
           TLQVFVLDENDNAPALLAPRVGGTGGAV ELVPRS+GAG VVAKVRAVDADSGYNAWLSY
Sbjct: 550 TLQVFVLDENDNAPALLAPRVGGTGGAVSELVPRSLGAGQVVAKVRAVDADSGYNAWLSY 609

Query: 610 ELQPVAAGASIPFRVGLYTGEISTTRALDETDAPRHRLLVLVKDHGEPSLTATATVLVSL 669
           ELQP A+ A  PFRVGLYTGEISTTR LDE D+PRHRLLVLVKDHGEP+LTATATVLVSL
Sbjct: 610 ELQPPASSARFPFRVGLYTGEISTTRVLDEADSPRHRLLVLVKDHGEPALTATATVLVSL 669

Query: 670 VESGQAPKASSRASLGIAGPETELVDVNVYLIIAICAVSSLLVLTLLLYTALRCSAPSSE 729
           VESGQAPKASSRAS+G AGPE  LVDVNVYLIIAICAVSSLLVLTLLLYTALRCSAP +E
Sbjct: 670 VESGQAPKASSRASVGAAGPEAALVDVNVYLIIAICAVSSLLVLTLLLYTALRCSAPPTE 729

Query: 730 GACSLVKPTLVCSSAVGSWSFSQQRRQRVCSGEGPPKTDLMAFSPSLPQGP 780
           GAC+  KPTLVCSSAVGSWS+SQQRRQRVCSGEGPPK DLMAFSPSL   P
Sbjct: 730 GACTADKPTLVCSSAVGSWSYSQQRRQRVCSGEGPPKMDLMAFSPSLSPCP 780


>gi|9256590 protocadherin alpha 5 isoform 1 precursor [Homo sapiens]
          Length = 936

 Score = 1199 bits (3102), Expect = 0.0
 Identities = 615/775 (79%), Positives = 669/775 (86%)

Query: 11  GRHLLLFIIILAAWEAGRGQLHYSVPEEAKHGNFVGRIAQDLGLELAELVPRLFRAVCKF 70
           G  LLL  ++LA W+AG GQLHYS+PEEAKHG FVGRIAQDLGLELAELVPRLFR   K 
Sbjct: 10  GSRLLLLWLLLAYWKAGSGQLHYSIPEEAKHGTFVGRIAQDLGLELAELVPRLFRVASKG 69

Query: 71  RGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVERPLQVFHVDVEVKDINDNP 130
           RGDLLEVNLQNGILFVNSRIDREELC R AECSIHLEVIV+RPLQVFHV+V VKDINDNP
Sbjct: 70  RGDLLEVNLQNGILFVNSRIDREELCRRRAECSIHLEVIVDRPLQVFHVEVAVKDINDNP 129

Query: 131 PVFPATQRNLFIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYFFLDVPTSNQQVK 190
           P F   ++ LFI ESR  DSRFPLEGASD DIG NA L YRL+PNEYF LDV T+ ++  
Sbjct: 130 PRFSRQEQRLFILESRMPDSRFPLEGASDLDIGANAQLRYRLNPNEYFDLDVKTNEEETN 189

Query: 191 PLGLVLRKLLDREETPELHLLLTATDGGKPELTGTVQLLITVLDNNDNAPVFDRTLYTVK 250
            L LVLRK LDREET E  LL+ ATDGGKPELTGTVQLLI VLD NDNAP FD+++Y V+
Sbjct: 190 FLELVLRKSLDREETQEHRLLVIATDGGKPELTGTVQLLINVLDANDNAPEFDKSIYNVR 249

Query: 251 LPENVSIGTLVIHPNASDLDEGLNGDIIYSFSSDVSPDIKSKFHMDPLSGAITVIGHMDF 310
           L EN   GTLVI  NASD DEG+N +I+Y FS+ V  D+KSKF ++  +G I V G +D+
Sbjct: 250 LLENAPSGTLVIKLNASDADEGINKEIVYFFSNLVLDDVKSKFIINSNTGEIKVNGELDY 309

Query: 311 EESRAHKIPVEAVDKGFPPLAGHCTVLVEVVDVNDNAPQLTLTSLSLPIPEDAQPGTVIT 370
           E+  +++I ++A+DK   PL+GHC V+V+++DVNDN P++ +T+L LP+ EDA   TVI 
Sbjct: 310 EDYNSYEINIDAMDKSTFPLSGHCKVVVKLLDVNDNTPEMAITTLFLPVKEDAPLSTVIA 369

Query: 371 LISVFDRDFGVNGQVTCSLTPRVPFKLVSTFKNYYSLVLDSALDRESVSAYELVVTARDG 430
           LISV DRD G NGQVTCSL P VPFKLVSTFKNYYSLVLDSALDRESVS YELVVTARDG
Sbjct: 370 LISVSDRDSGANGQVTCSLMPHVPFKLVSTFKNYYSLVLDSALDRESVSVYELVVTARDG 429

Query: 431 GSPSLWATASVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAGDADAQKNALV 490
           GSPSLWATASVSVEVADVNDNAPAFAQP+YTVFVKENNPPGCHIFTVSA DADAQ+NALV
Sbjct: 430 GSPSLWATASVSVEVADVNDNAPAFAQPQYTVFVKENNPPGCHIFTVSARDADAQENALV 489

Query: 491 SYSLVELRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDAGVPPLGSNVT 550
           SYSLVE RVGER LSSYVSVHAESGKVYALQPLDHEE+ELLQFQVSARDAGVPPLGSNVT
Sbjct: 490 SYSLVERRVGERPLSSYVSVHAESGKVYALQPLDHEEVELLQFQVSARDAGVPPLGSNVT 549

Query: 551 LQVFVLDENDNAPALLAPRVGGTGGAVRELVPRSVGAGHVVAKVRAVDADSGYNAWLSYE 610
           LQVFVLDENDNAPALL PRVGGTGGAV ELVPRSVGAGHVVAKVRAVD DSGYNAWLSYE
Sbjct: 550 LQVFVLDENDNAPALLVPRVGGTGGAVSELVPRSVGAGHVVAKVRAVDPDSGYNAWLSYE 609

Query: 611 LQPVAAGASIPFRVGLYTGEISTTRALDETDAPRHRLLVLVKDHGEPSLTATATVLVSLV 670
           LQP    A IPFRVGLYTGEISTTR+LDET+APRHRLLVLVKDHGEP LTATATVLVSLV
Sbjct: 610 LQPAPGSARIPFRVGLYTGEISTTRSLDETEAPRHRLLVLVKDHGEPPLTATATVLVSLV 669

Query: 671 ESGQAPKASSRASLGIAGPETELVDVNVYLIIAICAVSSLLVLTLLLYTALRCSAPSSEG 730
           ESGQAPKASSRAS G  GPE  LVDVNVYLIIAICAVSSLLVLTLLLYTALRCSA  +E 
Sbjct: 670 ESGQAPKASSRASAGAVGPEAALVDVNVYLIIAICAVSSLLVLTLLLYTALRCSAQPTEA 729

Query: 731 ACSLVKPTLVCSSAVGSWSFSQQRRQRVCSGEGPPKTDLMAFSPSLPQGPSSTDN 785
            C+  KPTL+CSSAVGSWS+SQQRRQRVCSGE PPKTDLMAFSPSLPQGP+STDN
Sbjct: 730 VCTRGKPTLLCSSAVGSWSYSQQRRQRVCSGEAPPKTDLMAFSPSLPQGPTSTDN 784


>gi|14165400 protocadherin alpha 1 isoform 2 precursor [Homo
           sapiens]
          Length = 807

 Score = 1196 bits (3094), Expect = 0.0
 Identities = 613/767 (79%), Positives = 671/767 (87%)

Query: 10  GGRHLLLFIIILAAWEAGRGQLHYSVPEEAKHGNFVGRIAQDLGLELAELVPRLFRAVCK 69
           G R LLL++++LAAWE G GQLHYS+PEEAKHG FVGR+AQDLGLELAELVPRLFR   K
Sbjct: 10  GARDLLLWLLLLAAWEVGSGQLHYSIPEEAKHGTFVGRVAQDLGLELAELVPRLFRVASK 69

Query: 70  FRGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVERPLQVFHVDVEVKDINDN 129
              DLLEVNLQNGILFVNSRIDREELC  SAECSIHLE+I +RPLQVFHV+V+VKDINDN
Sbjct: 70  THRDLLEVNLQNGILFVNSRIDREELCQWSAECSIHLELIADRPLQVFHVEVKVKDINDN 129

Query: 130 PPVFPATQRNLFIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYFFLDVPTSNQQV 189
           PPVF   ++ +FI ESR L+SRFP+EGA+DADIG NALLTY LSP++YF LDV  S++  
Sbjct: 130 PPVFRGREQIIFIPESRLLNSRFPIEGAADADIGANALLTYTLSPSDYFSLDVEASDELS 189

Query: 190 KPLGLVLRKLLDREETPELHLLLTATDGGKPELTGTVQLLITVLDNNDNAPVFDRTLYTV 249
           K L L LRK LDREETPELHLLLTATDGGKPEL GTV+LLITVLD NDNAP+FD+ +Y V
Sbjct: 190 KSLWLELRKYLDREETPELHLLLTATDGGKPELQGTVELLITVLDVNDNAPLFDQAVYRV 249

Query: 250 KLPENVSIGTLVIHPNASDLDEGLNGDIIYSFSSDVSPDIKSKFHMDPLSGAITVIGHMD 309
            L E  + GTLV   NASD DEG+NG++++SF S +S DI+ KF +D  SG I +I  +D
Sbjct: 250 HLLETTANGTLVTTLNASDADEGVNGEVVFSFDSGISRDIQEKFKVDSSSGEIRLIDKLD 309

Query: 310 FEESRAHKIPVEAVDKGFPPLAGHCTVLVEVVDVNDNAPQLTLTSLSLPIPEDAQPGTVI 369
           +EE+++++I V+AVDKG PP++ HC VLV+V+DVNDNAP+L +TSL LPI EDA   TVI
Sbjct: 310 YEETKSYEIQVKAVDKGSPPMSNHCKVLVKVLDVNDNAPELAVTSLYLPIREDAPLSTVI 369

Query: 370 TLISVFDRDFGVNGQVTCSLTPRVPFKLVSTFKNYYSLVLDSALDRESVSAYELVVTARD 429
            LI+V DRD G NGQVTCSL P VPFKLVSTFKNYYSLVLDSALDRES+S YELVVTARD
Sbjct: 370 ALITVSDRDSGANGQVTCSLMPHVPFKLVSTFKNYYSLVLDSALDRESLSVYELVVTARD 429

Query: 430 GGSPSLWATASVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAGDADAQKNAL 489
           GGSPSLWATA VSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSA DADAQ+NAL
Sbjct: 430 GGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSARDADAQENAL 489

Query: 490 VSYSLVELRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDAGVPPLGSNV 549
           VSYSLVE RVGERALS+YVSVHAESGKVYALQPLDHEELELLQFQVSARDAGVPPLGSNV
Sbjct: 490 VSYSLVERRVGERALSNYVSVHAESGKVYALQPLDHEELELLQFQVSARDAGVPPLGSNV 549

Query: 550 TLQVFVLDENDNAPALLAPRVGGTGGAVRELVPRSVGAGHVVAKVRAVDADSGYNAWLSY 609
           TLQVFVLDENDNAPALLAPRVGGT GAV ELVPR VGAGHVVAKVRAVDADSGYNAWLSY
Sbjct: 550 TLQVFVLDENDNAPALLAPRVGGTIGAVSELVPRLVGAGHVVAKVRAVDADSGYNAWLSY 609

Query: 610 ELQPVAAGASIPFRVGLYTGEISTTRALDETDAPRHRLLVLVKDHGEPSLTATATVLVSL 669
           ELQP A GA IPFRVGLYTGEISTTR LDE D  R+RLLVLVKDHGEP+LTATATVLVSL
Sbjct: 610 ELQPAAGGARIPFRVGLYTGEISTTRVLDEADLSRYRLLVLVKDHGEPALTATATVLVSL 669

Query: 670 VESGQAPKASSRASLGIAGPETELVDVNVYLIIAICAVSSLLVLTLLLYTALRCSAPSSE 729
           VESGQAPKASSRAS+G+AGPE  LVDVNVYLIIAICAVSSLLVLTLLLYTALRCS P +E
Sbjct: 670 VESGQAPKASSRASVGVAGPEAALVDVNVYLIIAICAVSSLLVLTLLLYTALRCSVPPTE 729

Query: 730 GACSLVKPTLVCSSAVGSWSFSQQRRQRVCSGEGPPKTDLMAFSPSL 776
           GA    KPTLVCSSA+GSWS SQQRRQRVCS EGPPKTDLMAFSP L
Sbjct: 730 GAYVPGKPTLVCSSALGSWSNSQQRRQRVCSSEGPPKTDLMAFSPGL 776


>gi|9256582 protocadherin alpha 1 isoform 1 precursor [Homo sapiens]
          Length = 950

 Score = 1196 bits (3094), Expect = 0.0
 Identities = 613/767 (79%), Positives = 671/767 (87%)

Query: 10  GGRHLLLFIIILAAWEAGRGQLHYSVPEEAKHGNFVGRIAQDLGLELAELVPRLFRAVCK 69
           G R LLL++++LAAWE G GQLHYS+PEEAKHG FVGR+AQDLGLELAELVPRLFR   K
Sbjct: 10  GARDLLLWLLLLAAWEVGSGQLHYSIPEEAKHGTFVGRVAQDLGLELAELVPRLFRVASK 69

Query: 70  FRGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVERPLQVFHVDVEVKDINDN 129
              DLLEVNLQNGILFVNSRIDREELC  SAECSIHLE+I +RPLQVFHV+V+VKDINDN
Sbjct: 70  THRDLLEVNLQNGILFVNSRIDREELCQWSAECSIHLELIADRPLQVFHVEVKVKDINDN 129

Query: 130 PPVFPATQRNLFIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYFFLDVPTSNQQV 189
           PPVF   ++ +FI ESR L+SRFP+EGA+DADIG NALLTY LSP++YF LDV  S++  
Sbjct: 130 PPVFRGREQIIFIPESRLLNSRFPIEGAADADIGANALLTYTLSPSDYFSLDVEASDELS 189

Query: 190 KPLGLVLRKLLDREETPELHLLLTATDGGKPELTGTVQLLITVLDNNDNAPVFDRTLYTV 249
           K L L LRK LDREETPELHLLLTATDGGKPEL GTV+LLITVLD NDNAP+FD+ +Y V
Sbjct: 190 KSLWLELRKYLDREETPELHLLLTATDGGKPELQGTVELLITVLDVNDNAPLFDQAVYRV 249

Query: 250 KLPENVSIGTLVIHPNASDLDEGLNGDIIYSFSSDVSPDIKSKFHMDPLSGAITVIGHMD 309
            L E  + GTLV   NASD DEG+NG++++SF S +S DI+ KF +D  SG I +I  +D
Sbjct: 250 HLLETTANGTLVTTLNASDADEGVNGEVVFSFDSGISRDIQEKFKVDSSSGEIRLIDKLD 309

Query: 310 FEESRAHKIPVEAVDKGFPPLAGHCTVLVEVVDVNDNAPQLTLTSLSLPIPEDAQPGTVI 369
           +EE+++++I V+AVDKG PP++ HC VLV+V+DVNDNAP+L +TSL LPI EDA   TVI
Sbjct: 310 YEETKSYEIQVKAVDKGSPPMSNHCKVLVKVLDVNDNAPELAVTSLYLPIREDAPLSTVI 369

Query: 370 TLISVFDRDFGVNGQVTCSLTPRVPFKLVSTFKNYYSLVLDSALDRESVSAYELVVTARD 429
            LI+V DRD G NGQVTCSL P VPFKLVSTFKNYYSLVLDSALDRES+S YELVVTARD
Sbjct: 370 ALITVSDRDSGANGQVTCSLMPHVPFKLVSTFKNYYSLVLDSALDRESLSVYELVVTARD 429

Query: 430 GGSPSLWATASVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAGDADAQKNAL 489
           GGSPSLWATA VSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSA DADAQ+NAL
Sbjct: 430 GGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSARDADAQENAL 489

Query: 490 VSYSLVELRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDAGVPPLGSNV 549
           VSYSLVE RVGERALS+YVSVHAESGKVYALQPLDHEELELLQFQVSARDAGVPPLGSNV
Sbjct: 490 VSYSLVERRVGERALSNYVSVHAESGKVYALQPLDHEELELLQFQVSARDAGVPPLGSNV 549

Query: 550 TLQVFVLDENDNAPALLAPRVGGTGGAVRELVPRSVGAGHVVAKVRAVDADSGYNAWLSY 609
           TLQVFVLDENDNAPALLAPRVGGT GAV ELVPR VGAGHVVAKVRAVDADSGYNAWLSY
Sbjct: 550 TLQVFVLDENDNAPALLAPRVGGTIGAVSELVPRLVGAGHVVAKVRAVDADSGYNAWLSY 609

Query: 610 ELQPVAAGASIPFRVGLYTGEISTTRALDETDAPRHRLLVLVKDHGEPSLTATATVLVSL 669
           ELQP A GA IPFRVGLYTGEISTTR LDE D  R+RLLVLVKDHGEP+LTATATVLVSL
Sbjct: 610 ELQPAAGGARIPFRVGLYTGEISTTRVLDEADLSRYRLLVLVKDHGEPALTATATVLVSL 669

Query: 670 VESGQAPKASSRASLGIAGPETELVDVNVYLIIAICAVSSLLVLTLLLYTALRCSAPSSE 729
           VESGQAPKASSRAS+G+AGPE  LVDVNVYLIIAICAVSSLLVLTLLLYTALRCS P +E
Sbjct: 670 VESGQAPKASSRASVGVAGPEAALVDVNVYLIIAICAVSSLLVLTLLLYTALRCSVPPTE 729

Query: 730 GACSLVKPTLVCSSAVGSWSFSQQRRQRVCSGEGPPKTDLMAFSPSL 776
           GA    KPTLVCSSA+GSWS SQQRRQRVCS EGPPKTDLMAFSP L
Sbjct: 730 GAYVPGKPTLVCSSALGSWSNSQQRRQRVCSSEGPPKTDLMAFSPGL 776


>gi|14165422 protocadherin alpha 8 isoform 2 precursor [Homo
           sapiens]
          Length = 814

 Score = 1192 bits (3084), Expect = 0.0
 Identities = 609/775 (78%), Positives = 663/775 (85%)

Query: 10  GGRHLLLFIIILAAWEAGRGQLHYSVPEEAKHGNFVGRIAQDLGLELAELVPRLFRAVCK 69
           G   LLL +++LAAW+ G GQLHYSVPEEAKHG FVGRIAQDLGLELAELVPRLFR   K
Sbjct: 10  GSWRLLLLLLLLAAWKVGSGQLHYSVPEEAKHGTFVGRIAQDLGLELAELVPRLFRVASK 69

Query: 70  FRGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVERPLQVFHVDVEVKDINDN 129
              DLLEV+LQNGILFVNSRIDREELCGRSAECSIHLEVIV+RPLQVFHVDVEVKD+NDN
Sbjct: 70  RHRDLLEVSLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVDVEVKDVNDN 129

Query: 130 PPVFPATQRNLFIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYFFLDVPTSNQQV 189
           PPVF    + LF++ESR  DSRFPLEGASDAD+G N++LTYRLS ++YF LDV + N + 
Sbjct: 130 PPVFRVKDQKLFVSESRMPDSRFPLEGASDADVGANSVLTYRLSSHDYFMLDVNSKNDEN 189

Query: 190 KPLGLVLRKLLDREETPELHLLLTATDGGKPELTGTVQLLITVLDNNDNAPVFDRTLYTV 249
           K + LVLRK LDRE+ P  HL LTATDGGKPELTGTVQLL+TVLD NDNAP F+++ Y V
Sbjct: 190 KLVELVLRKSLDREDAPAHHLFLTATDGGKPELTGTVQLLVTVLDVNDNAPTFEQSEYEV 249

Query: 250 KLPENVSIGTLVIHPNASDLDEGLNGDIIYSFSSDVSPDIKSKFHMDPLSGAITVIGHMD 309
           ++ EN   GT VI  NASD DEG NG I YSF+S V   +   F +D  +G I + G++D
Sbjct: 250 RIFENADNGTTVIKLNASDPDEGANGAISYSFNSLVETMVIDHFSIDRNTGEIVIRGNLD 309

Query: 310 FEESRAHKIPVEAVDKGFPPLAGHCTVLVEVVDVNDNAPQLTLTSLSLPIPEDAQPGTVI 369
           FE+   +KI ++A DKG PP+AGHCTVLV ++D NDN P++ LTSLSLP+ EDAQ GTVI
Sbjct: 310 FEQENLYKILIDATDKGHPPMAGHCTVLVRILDKNDNVPEIALTSLSLPVREDAQFGTVI 369

Query: 370 TLISVFDRDFGVNGQVTCSLTPRVPFKLVSTFKNYYSLVLDSALDRESVSAYELVVTARD 429
            LISV D D G NGQVTCSL P VPFKLVSTFKNYYSLVLDSALDRE VSAYELVVTARD
Sbjct: 370 ALISVNDLDSGANGQVTCSLMPHVPFKLVSTFKNYYSLVLDSALDRERVSAYELVVTARD 429

Query: 430 GGSPSLWATASVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAGDADAQKNAL 489
           GGSPSLWATAS+SVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSA DADAQ+NAL
Sbjct: 430 GGSPSLWATASLSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSARDADAQENAL 489

Query: 490 VSYSLVELRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDAGVPPLGSNV 549
           VSYSLVE RVGER+LSSY+SVH ESGKVYALQPLDHEELELLQFQVSARDAGVPPLGSNV
Sbjct: 490 VSYSLVERRVGERSLSSYISVHTESGKVYALQPLDHEELELLQFQVSARDAGVPPLGSNV 549

Query: 550 TLQVFVLDENDNAPALLAPRVGGTGGAVRELVPRSVGAGHVVAKVRAVDADSGYNAWLSY 609
           TLQVFVLDENDNAPALL PRVGGTGGA  +LVPRSVGAGHVVAKVRAVDADSGYNAWLSY
Sbjct: 550 TLQVFVLDENDNAPALLEPRVGGTGGAASKLVPRSVGAGHVVAKVRAVDADSGYNAWLSY 609

Query: 610 ELQPVAAGASIPFRVGLYTGEISTTRALDETDAPRHRLLVLVKDHGEPSLTATATVLVSL 669
           ELQP A+   IPFRVGLYTGEISTTR LDE D+PRHRLLVLVKDHGEP+LTATATVLVSL
Sbjct: 610 ELQPAASSPRIPFRVGLYTGEISTTRVLDEADSPRHRLLVLVKDHGEPALTATATVLVSL 669

Query: 670 VESGQAPKASSRASLGIAGPETELVDVNVYLIIAICAVSSLLVLTLLLYTALRCSAPSSE 729
           VESGQAPKASSR S G+ GPE  LVDVNVYLIIAICAVSSLLVLTLLLYTALRCSA  +E
Sbjct: 670 VESGQAPKASSRQSAGVLGPEAALVDVNVYLIIAICAVSSLLVLTLLLYTALRCSALPTE 729

Query: 730 GACSLVKPTLVCSSAVGSWSFSQQRRQRVCSGEGPPKTDLMAFSPSLPQGPSSTD 784
           G C   KPTLVCSSAVGSWS+SQQ+ QRVCSGEGPPKTDLMAFSP LP    S D
Sbjct: 730 GGCRAGKPTLVCSSAVGSWSYSQQQPQRVCSGEGPPKTDLMAFSPCLPPDLGSVD 784


>gi|9256596 protocadherin alpha 8 isoform 1 precursor [Homo sapiens]
          Length = 950

 Score = 1192 bits (3084), Expect = 0.0
 Identities = 609/775 (78%), Positives = 663/775 (85%)

Query: 10  GGRHLLLFIIILAAWEAGRGQLHYSVPEEAKHGNFVGRIAQDLGLELAELVPRLFRAVCK 69
           G   LLL +++LAAW+ G GQLHYSVPEEAKHG FVGRIAQDLGLELAELVPRLFR   K
Sbjct: 10  GSWRLLLLLLLLAAWKVGSGQLHYSVPEEAKHGTFVGRIAQDLGLELAELVPRLFRVASK 69

Query: 70  FRGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVERPLQVFHVDVEVKDINDN 129
              DLLEV+LQNGILFVNSRIDREELCGRSAECSIHLEVIV+RPLQVFHVDVEVKD+NDN
Sbjct: 70  RHRDLLEVSLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVDVEVKDVNDN 129

Query: 130 PPVFPATQRNLFIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYFFLDVPTSNQQV 189
           PPVF    + LF++ESR  DSRFPLEGASDAD+G N++LTYRLS ++YF LDV + N + 
Sbjct: 130 PPVFRVKDQKLFVSESRMPDSRFPLEGASDADVGANSVLTYRLSSHDYFMLDVNSKNDEN 189

Query: 190 KPLGLVLRKLLDREETPELHLLLTATDGGKPELTGTVQLLITVLDNNDNAPVFDRTLYTV 249
           K + LVLRK LDRE+ P  HL LTATDGGKPELTGTVQLL+TVLD NDNAP F+++ Y V
Sbjct: 190 KLVELVLRKSLDREDAPAHHLFLTATDGGKPELTGTVQLLVTVLDVNDNAPTFEQSEYEV 249

Query: 250 KLPENVSIGTLVIHPNASDLDEGLNGDIIYSFSSDVSPDIKSKFHMDPLSGAITVIGHMD 309
           ++ EN   GT VI  NASD DEG NG I YSF+S V   +   F +D  +G I + G++D
Sbjct: 250 RIFENADNGTTVIKLNASDPDEGANGAISYSFNSLVETMVIDHFSIDRNTGEIVIRGNLD 309

Query: 310 FEESRAHKIPVEAVDKGFPPLAGHCTVLVEVVDVNDNAPQLTLTSLSLPIPEDAQPGTVI 369
           FE+   +KI ++A DKG PP+AGHCTVLV ++D NDN P++ LTSLSLP+ EDAQ GTVI
Sbjct: 310 FEQENLYKILIDATDKGHPPMAGHCTVLVRILDKNDNVPEIALTSLSLPVREDAQFGTVI 369

Query: 370 TLISVFDRDFGVNGQVTCSLTPRVPFKLVSTFKNYYSLVLDSALDRESVSAYELVVTARD 429
            LISV D D G NGQVTCSL P VPFKLVSTFKNYYSLVLDSALDRE VSAYELVVTARD
Sbjct: 370 ALISVNDLDSGANGQVTCSLMPHVPFKLVSTFKNYYSLVLDSALDRERVSAYELVVTARD 429

Query: 430 GGSPSLWATASVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAGDADAQKNAL 489
           GGSPSLWATAS+SVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSA DADAQ+NAL
Sbjct: 430 GGSPSLWATASLSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSARDADAQENAL 489

Query: 490 VSYSLVELRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDAGVPPLGSNV 549
           VSYSLVE RVGER+LSSY+SVH ESGKVYALQPLDHEELELLQFQVSARDAGVPPLGSNV
Sbjct: 490 VSYSLVERRVGERSLSSYISVHTESGKVYALQPLDHEELELLQFQVSARDAGVPPLGSNV 549

Query: 550 TLQVFVLDENDNAPALLAPRVGGTGGAVRELVPRSVGAGHVVAKVRAVDADSGYNAWLSY 609
           TLQVFVLDENDNAPALL PRVGGTGGA  +LVPRSVGAGHVVAKVRAVDADSGYNAWLSY
Sbjct: 550 TLQVFVLDENDNAPALLEPRVGGTGGAASKLVPRSVGAGHVVAKVRAVDADSGYNAWLSY 609

Query: 610 ELQPVAAGASIPFRVGLYTGEISTTRALDETDAPRHRLLVLVKDHGEPSLTATATVLVSL 669
           ELQP A+   IPFRVGLYTGEISTTR LDE D+PRHRLLVLVKDHGEP+LTATATVLVSL
Sbjct: 610 ELQPAASSPRIPFRVGLYTGEISTTRVLDEADSPRHRLLVLVKDHGEPALTATATVLVSL 669

Query: 670 VESGQAPKASSRASLGIAGPETELVDVNVYLIIAICAVSSLLVLTLLLYTALRCSAPSSE 729
           VESGQAPKASSR S G+ GPE  LVDVNVYLIIAICAVSSLLVLTLLLYTALRCSA  +E
Sbjct: 670 VESGQAPKASSRQSAGVLGPEAALVDVNVYLIIAICAVSSLLVLTLLLYTALRCSALPTE 729

Query: 730 GACSLVKPTLVCSSAVGSWSFSQQRRQRVCSGEGPPKTDLMAFSPSLPQGPSSTD 784
           G C   KPTLVCSSAVGSWS+SQQ+ QRVCSGEGPPKTDLMAFSP LP    S D
Sbjct: 730 GGCRAGKPTLVCSSAVGSWSYSQQQPQRVCSGEGPPKTDLMAFSPCLPPDLGSVD 784


>gi|14165405 protocadherin alpha 2 isoform 2 precursor [Homo
           sapiens]
          Length = 824

 Score = 1187 bits (3070), Expect = 0.0
 Identities = 606/770 (78%), Positives = 669/770 (86%)

Query: 15  LLFIIILAAWEAGRGQLHYSVPEEAKHGNFVGRIAQDLGLELAELVPRLFRAVCKFRGDL 74
           LL +++LAAWE G GQL YSVPEEAKHG FVGRIAQDLGLEL ELVPRLFR   K  GDL
Sbjct: 15  LLSLLLLAAWEVGSGQLRYSVPEEAKHGTFVGRIAQDLGLELEELVPRLFRVASKRHGDL 74

Query: 75  LEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVERPLQVFHVDVEVKDINDNPPVFP 134
           LEVNLQNGILFVNSRIDREELCGRSAECSIH+EVIV+RPLQVFHV+VEVKDINDNPP+FP
Sbjct: 75  LEVNLQNGILFVNSRIDREELCGRSAECSIHVEVIVDRPLQVFHVEVEVKDINDNPPIFP 134

Query: 135 ATQRNLFIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYFFLDVPTSNQQVKPLGL 194
            T + +   ESR LDSRFPLEGASDADIG NALL+Y+LS +E+FFLD+  +++  + L L
Sbjct: 135 MTVKTIRFPESRLLDSRFPLEGASDADIGVNALLSYKLSSSEFFFLDIQANDELSESLSL 194

Query: 195 VLRKLLDREETPELHLLLTATDGGKPELTGTVQLLITVLDNNDNAPVFDRTLYTVKLPEN 254
           VL K LDREET E++LLL ATDGGKPELTGTVQ+LI VLD NDN P F +++Y VKL EN
Sbjct: 195 VLGKSLDREETAEVNLLLVATDGGKPELTGTVQILIKVLDVNDNEPTFAQSVYKVKLLEN 254

Query: 255 VSIGTLVIHPNASDLDEGLNGDIIYSFSSDVSPDIKSKFHMDPLSGAITVIGHMDFEESR 314
            + GTLV+  NASD DEG N +I+YS  SDVS  I++KF +DP+SG I   G +D+EE++
Sbjct: 255 TANGTLVVKLNASDADEGPNSEIVYSLGSDVSSTIQTKFTIDPISGEIRTKGKLDYEEAK 314

Query: 315 AHKIPVEAVDKGFPPLAGHCTVLVEVVDVNDNAPQLTLTSLSLPIPEDAQPGTVITLISV 374
           +++I V A DKG P ++GHC + +++VD+NDN P++++TSLSLPI E+A  GTVI LI+V
Sbjct: 315 SYEIQVTATDKGTPSMSGHCKISLKLVDINDNTPEVSITSLSLPISENASLGTVIALITV 374

Query: 375 FDRDFGVNGQVTCSLTPRVPFKLVSTFKNYYSLVLDSALDRESVSAYELVVTARDGGSPS 434
            DRD G NG VTCSLTP VPFKLVSTFKNYYSLVLDSALDRESVSAYELVVTARDGGSPS
Sbjct: 375 SDRDSGTNGHVTCSLTPHVPFKLVSTFKNYYSLVLDSALDRESVSAYELVVTARDGGSPS 434

Query: 435 LWATASVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAGDADAQKNALVSYSL 494
           LWAT SVS+EVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSA DADAQ+NALVSYSL
Sbjct: 435 LWATTSVSIEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAWDADAQENALVSYSL 494

Query: 495 VELRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDAGVPPLGSNVTLQVF 554
           VE RVGERALSSYVSVHAESGKVYALQPLDHEE+ELLQFQVSARDAGVPPLGSNVTLQVF
Sbjct: 495 VERRVGERALSSYVSVHAESGKVYALQPLDHEEVELLQFQVSARDAGVPPLGSNVTLQVF 554

Query: 555 VLDENDNAPALLAPRVGGTGGAVRELVPRSVGAGHVVAKVRAVDADSGYNAWLSYELQPV 614
           VLDENDNAPALLAPR G   GAV ELVP SVGAGHVVAKVRAVDADSGYNAWLSYELQ  
Sbjct: 555 VLDENDNAPALLAPRAGTAAGAVSELVPWSVGAGHVVAKVRAVDADSGYNAWLSYELQLG 614

Query: 615 AAGASIPFRVGLYTGEISTTRALDETDAPRHRLLVLVKDHGEPSLTATATVLVSLVESGQ 674
              A IPFRVGLYTGEISTTRALDE D+PRHRLLVLVKDHGEP+LTATATVLVSLVESGQ
Sbjct: 615 TGSARIPFRVGLYTGEISTTRALDEADSPRHRLLVLVKDHGEPALTATATVLVSLVESGQ 674

Query: 675 APKASSRASLGIAGPETELVDVNVYLIIAICAVSSLLVLTLLLYTALRCSAPSSEGACSL 734
           APKASSRA +G AG E  LVDVNVYLIIAICAVSSLLVLT+LLYTALRCS P +EGA + 
Sbjct: 675 APKASSRAWVGAAGSEATLVDVNVYLIIAICAVSSLLVLTVLLYTALRCSVPPTEGARAP 734

Query: 735 VKPTLVCSSAVGSWSFSQQRRQRVCSGEGPPKTDLMAFSPSLPQGPSSTD 784
            KPTLVCSSAVGSWS+SQQRRQRVCSGE PPKTDLMAFSPSL QGP S +
Sbjct: 735 GKPTLVCSSAVGSWSYSQQRRQRVCSGEDPPKTDLMAFSPSLSQGPDSAE 784


>gi|9256584 protocadherin alpha 2 isoform 1 precursor [Homo sapiens]
          Length = 948

 Score = 1187 bits (3070), Expect = 0.0
 Identities = 606/770 (78%), Positives = 669/770 (86%)

Query: 15  LLFIIILAAWEAGRGQLHYSVPEEAKHGNFVGRIAQDLGLELAELVPRLFRAVCKFRGDL 74
           LL +++LAAWE G GQL YSVPEEAKHG FVGRIAQDLGLEL ELVPRLFR   K  GDL
Sbjct: 15  LLSLLLLAAWEVGSGQLRYSVPEEAKHGTFVGRIAQDLGLELEELVPRLFRVASKRHGDL 74

Query: 75  LEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVERPLQVFHVDVEVKDINDNPPVFP 134
           LEVNLQNGILFVNSRIDREELCGRSAECSIH+EVIV+RPLQVFHV+VEVKDINDNPP+FP
Sbjct: 75  LEVNLQNGILFVNSRIDREELCGRSAECSIHVEVIVDRPLQVFHVEVEVKDINDNPPIFP 134

Query: 135 ATQRNLFIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYFFLDVPTSNQQVKPLGL 194
            T + +   ESR LDSRFPLEGASDADIG NALL+Y+LS +E+FFLD+  +++  + L L
Sbjct: 135 MTVKTIRFPESRLLDSRFPLEGASDADIGVNALLSYKLSSSEFFFLDIQANDELSESLSL 194

Query: 195 VLRKLLDREETPELHLLLTATDGGKPELTGTVQLLITVLDNNDNAPVFDRTLYTVKLPEN 254
           VL K LDREET E++LLL ATDGGKPELTGTVQ+LI VLD NDN P F +++Y VKL EN
Sbjct: 195 VLGKSLDREETAEVNLLLVATDGGKPELTGTVQILIKVLDVNDNEPTFAQSVYKVKLLEN 254

Query: 255 VSIGTLVIHPNASDLDEGLNGDIIYSFSSDVSPDIKSKFHMDPLSGAITVIGHMDFEESR 314
            + GTLV+  NASD DEG N +I+YS  SDVS  I++KF +DP+SG I   G +D+EE++
Sbjct: 255 TANGTLVVKLNASDADEGPNSEIVYSLGSDVSSTIQTKFTIDPISGEIRTKGKLDYEEAK 314

Query: 315 AHKIPVEAVDKGFPPLAGHCTVLVEVVDVNDNAPQLTLTSLSLPIPEDAQPGTVITLISV 374
           +++I V A DKG P ++GHC + +++VD+NDN P++++TSLSLPI E+A  GTVI LI+V
Sbjct: 315 SYEIQVTATDKGTPSMSGHCKISLKLVDINDNTPEVSITSLSLPISENASLGTVIALITV 374

Query: 375 FDRDFGVNGQVTCSLTPRVPFKLVSTFKNYYSLVLDSALDRESVSAYELVVTARDGGSPS 434
            DRD G NG VTCSLTP VPFKLVSTFKNYYSLVLDSALDRESVSAYELVVTARDGGSPS
Sbjct: 375 SDRDSGTNGHVTCSLTPHVPFKLVSTFKNYYSLVLDSALDRESVSAYELVVTARDGGSPS 434

Query: 435 LWATASVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAGDADAQKNALVSYSL 494
           LWAT SVS+EVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSA DADAQ+NALVSYSL
Sbjct: 435 LWATTSVSIEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAWDADAQENALVSYSL 494

Query: 495 VELRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDAGVPPLGSNVTLQVF 554
           VE RVGERALSSYVSVHAESGKVYALQPLDHEE+ELLQFQVSARDAGVPPLGSNVTLQVF
Sbjct: 495 VERRVGERALSSYVSVHAESGKVYALQPLDHEEVELLQFQVSARDAGVPPLGSNVTLQVF 554

Query: 555 VLDENDNAPALLAPRVGGTGGAVRELVPRSVGAGHVVAKVRAVDADSGYNAWLSYELQPV 614
           VLDENDNAPALLAPR G   GAV ELVP SVGAGHVVAKVRAVDADSGYNAWLSYELQ  
Sbjct: 555 VLDENDNAPALLAPRAGTAAGAVSELVPWSVGAGHVVAKVRAVDADSGYNAWLSYELQLG 614

Query: 615 AAGASIPFRVGLYTGEISTTRALDETDAPRHRLLVLVKDHGEPSLTATATVLVSLVESGQ 674
              A IPFRVGLYTGEISTTRALDE D+PRHRLLVLVKDHGEP+LTATATVLVSLVESGQ
Sbjct: 615 TGSARIPFRVGLYTGEISTTRALDEADSPRHRLLVLVKDHGEPALTATATVLVSLVESGQ 674

Query: 675 APKASSRASLGIAGPETELVDVNVYLIIAICAVSSLLVLTLLLYTALRCSAPSSEGACSL 734
           APKASSRA +G AG E  LVDVNVYLIIAICAVSSLLVLT+LLYTALRCS P +EGA + 
Sbjct: 675 APKASSRAWVGAAGSEATLVDVNVYLIIAICAVSSLLVLTVLLYTALRCSVPPTEGARAP 734

Query: 735 VKPTLVCSSAVGSWSFSQQRRQRVCSGEGPPKTDLMAFSPSLPQGPSSTD 784
            KPTLVCSSAVGSWS+SQQRRQRVCSGE PPKTDLMAFSPSL QGP S +
Sbjct: 735 GKPTLVCSSAVGSWSYSQQRRQRVCSGEDPPKTDLMAFSPSLSQGPDSAE 784


>gi|14165387 protocadherin alpha 11 isoform 2 precursor [Homo
           sapiens]
          Length = 810

 Score = 1182 bits (3059), Expect = 0.0
 Identities = 607/770 (78%), Positives = 666/770 (86%), Gaps = 1/770 (0%)

Query: 10  GGRHLLLFIIILAAWEAGRGQLHYSVPEEAKHGNFVGRIAQDLGLELAELVPRLFRAVCK 69
           G   L L++++L  WE G GQLHYSV EEAKHG FVGRIAQDLGLELAELV RLFR   K
Sbjct: 10  GTPRLQLWLLLLEFWEVGSGQLHYSVSEEAKHGTFVGRIAQDLGLELAELVQRLFRVASK 69

Query: 70  FRGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVERPLQVFHVDVEVKDINDN 129
             GDLLEVNLQNGILFVNSRIDREELCG+SAECSIHLEVIV+RPLQVFHV+VEVKDINDN
Sbjct: 70  THGDLLEVNLQNGILFVNSRIDREELCGQSAECSIHLEVIVDRPLQVFHVNVEVKDINDN 129

Query: 130 PPVFPATQRNLFIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYFFLDVPTSNQQV 189
           PPVF   ++ L IAES+  DSRFPLEGASDADI ENALLTYRLS NEYF LD PT+ +Q+
Sbjct: 130 PPVFSLREQKLLIAESKQSDSRFPLEGASDADIEENALLTYRLSKNEYFSLDSPTNGKQI 189

Query: 190 KPLGLVLRKLLDREETPELHLLLTATDGGKPELTGTVQLLITVLDNNDNAPVFDRTLYTV 249
           K L L+L+K LDRE+TPEL+LLLTATDGGKPELTGTV+LL+ VLD NDN P FD++ Y V
Sbjct: 190 KRLSLILKKSLDREKTPELNLLLTATDGGKPELTGTVRLLVQVLDVNDNDPEFDKSEYKV 249

Query: 250 KLPENVSIGTLVIHPNASDLDEGLNGDIIYSFSSDVSPDIKSKFHMDPLSGAITVIGHMD 309
            L EN +  TLV+  NA+D DEG+NG++ YS  S + P+ +  F +D  +G + V G +D
Sbjct: 250 SLMENAAKETLVLKLNATDRDEGVNGEVTYSLMS-IKPNGRHLFTLDQNNGEVRVNGTLD 308

Query: 310 FEESRAHKIPVEAVDKGFPPLAGHCTVLVEVVDVNDNAPQLTLTSLSLPIPEDAQPGTVI 369
           +EE++ +KI V+A DKG PP+AGHCTV VE++D NDN+P++ +TSLSLP+ EDAQP TVI
Sbjct: 309 YEENKFYKIEVQATDKGTPPMAGHCTVWVEILDTNDNSPEVAVTSLSLPVREDAQPSTVI 368

Query: 370 TLISVFDRDFGVNGQVTCSLTPRVPFKLVSTFKNYYSLVLDSALDRESVSAYELVVTARD 429
            LISV DRD GVNGQVTCSLTP VPFKLVSTFKNYYSLVLDSALDRE+V AYELVVTARD
Sbjct: 369 ALISVSDRDSGVNGQVTCSLTPHVPFKLVSTFKNYYSLVLDSALDRENVWAYELVVTARD 428

Query: 430 GGSPSLWATASVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAGDADAQKNAL 489
           GGSPSLWATA VSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSA DADAQ+NAL
Sbjct: 429 GGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSARDADAQENAL 488

Query: 490 VSYSLVELRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDAGVPPLGSNV 549
           VSYSLVE R+G+RALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDAGVPPL SNV
Sbjct: 489 VSYSLVERRLGDRALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDAGVPPLSSNV 548

Query: 550 TLQVFVLDENDNAPALLAPRVGGTGGAVRELVPRSVGAGHVVAKVRAVDADSGYNAWLSY 609
           TLQVFVLDENDNAPALLA + G  GGAV +LVPRSVGAGHVVAKVRAVDADSGYNAWLSY
Sbjct: 549 TLQVFVLDENDNAPALLATQAGSAGGAVNKLVPRSVGAGHVVAKVRAVDADSGYNAWLSY 608

Query: 610 ELQPVAAGASIPFRVGLYTGEISTTRALDETDAPRHRLLVLVKDHGEPSLTATATVLVSL 669
           ELQP A G+ IPFRVGLYTGEISTTRALDE D+PRHRLLVLVKDHGEP+LTATATVLVSL
Sbjct: 609 ELQPAAGGSRIPFRVGLYTGEISTTRALDEADSPRHRLLVLVKDHGEPALTATATVLVSL 668

Query: 670 VESGQAPKASSRASLGIAGPETELVDVNVYLIIAICAVSSLLVLTLLLYTALRCSAPSSE 729
           VESGQAPKASSR   G A PE  LVDVNVYLIIAIC VSSLLVLTLLLYTAL  SA  +E
Sbjct: 669 VESGQAPKASSRTLAGAASPEAALVDVNVYLIIAICVVSSLLVLTLLLYTALWWSATPTE 728

Query: 730 GACSLVKPTLVCSSAVGSWSFSQQRRQRVCSGEGPPKTDLMAFSPSLPQG 779
           GAC+  KPTLVCS AVGSWS+SQQRRQRVCS EGPPKTDLMAFSPSLP G
Sbjct: 729 GACAPGKPTLVCSRAVGSWSYSQQRRQRVCSEEGPPKTDLMAFSPSLPLG 778


>gi|9256576 protocadherin alpha 11 isoform 1 precursor [Homo
           sapiens]
          Length = 949

 Score = 1182 bits (3059), Expect = 0.0
 Identities = 607/770 (78%), Positives = 666/770 (86%), Gaps = 1/770 (0%)

Query: 10  GGRHLLLFIIILAAWEAGRGQLHYSVPEEAKHGNFVGRIAQDLGLELAELVPRLFRAVCK 69
           G   L L++++L  WE G GQLHYSV EEAKHG FVGRIAQDLGLELAELV RLFR   K
Sbjct: 10  GTPRLQLWLLLLEFWEVGSGQLHYSVSEEAKHGTFVGRIAQDLGLELAELVQRLFRVASK 69

Query: 70  FRGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVERPLQVFHVDVEVKDINDN 129
             GDLLEVNLQNGILFVNSRIDREELCG+SAECSIHLEVIV+RPLQVFHV+VEVKDINDN
Sbjct: 70  THGDLLEVNLQNGILFVNSRIDREELCGQSAECSIHLEVIVDRPLQVFHVNVEVKDINDN 129

Query: 130 PPVFPATQRNLFIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYFFLDVPTSNQQV 189
           PPVF   ++ L IAES+  DSRFPLEGASDADI ENALLTYRLS NEYF LD PT+ +Q+
Sbjct: 130 PPVFSLREQKLLIAESKQSDSRFPLEGASDADIEENALLTYRLSKNEYFSLDSPTNGKQI 189

Query: 190 KPLGLVLRKLLDREETPELHLLLTATDGGKPELTGTVQLLITVLDNNDNAPVFDRTLYTV 249
           K L L+L+K LDRE+TPEL+LLLTATDGGKPELTGTV+LL+ VLD NDN P FD++ Y V
Sbjct: 190 KRLSLILKKSLDREKTPELNLLLTATDGGKPELTGTVRLLVQVLDVNDNDPEFDKSEYKV 249

Query: 250 KLPENVSIGTLVIHPNASDLDEGLNGDIIYSFSSDVSPDIKSKFHMDPLSGAITVIGHMD 309
            L EN +  TLV+  NA+D DEG+NG++ YS  S + P+ +  F +D  +G + V G +D
Sbjct: 250 SLMENAAKETLVLKLNATDRDEGVNGEVTYSLMS-IKPNGRHLFTLDQNNGEVRVNGTLD 308

Query: 310 FEESRAHKIPVEAVDKGFPPLAGHCTVLVEVVDVNDNAPQLTLTSLSLPIPEDAQPGTVI 369
           +EE++ +KI V+A DKG PP+AGHCTV VE++D NDN+P++ +TSLSLP+ EDAQP TVI
Sbjct: 309 YEENKFYKIEVQATDKGTPPMAGHCTVWVEILDTNDNSPEVAVTSLSLPVREDAQPSTVI 368

Query: 370 TLISVFDRDFGVNGQVTCSLTPRVPFKLVSTFKNYYSLVLDSALDRESVSAYELVVTARD 429
            LISV DRD GVNGQVTCSLTP VPFKLVSTFKNYYSLVLDSALDRE+V AYELVVTARD
Sbjct: 369 ALISVSDRDSGVNGQVTCSLTPHVPFKLVSTFKNYYSLVLDSALDRENVWAYELVVTARD 428

Query: 430 GGSPSLWATASVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAGDADAQKNAL 489
           GGSPSLWATA VSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSA DADAQ+NAL
Sbjct: 429 GGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSARDADAQENAL 488

Query: 490 VSYSLVELRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDAGVPPLGSNV 549
           VSYSLVE R+G+RALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDAGVPPL SNV
Sbjct: 489 VSYSLVERRLGDRALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDAGVPPLSSNV 548

Query: 550 TLQVFVLDENDNAPALLAPRVGGTGGAVRELVPRSVGAGHVVAKVRAVDADSGYNAWLSY 609
           TLQVFVLDENDNAPALLA + G  GGAV +LVPRSVGAGHVVAKVRAVDADSGYNAWLSY
Sbjct: 549 TLQVFVLDENDNAPALLATQAGSAGGAVNKLVPRSVGAGHVVAKVRAVDADSGYNAWLSY 608

Query: 610 ELQPVAAGASIPFRVGLYTGEISTTRALDETDAPRHRLLVLVKDHGEPSLTATATVLVSL 669
           ELQP A G+ IPFRVGLYTGEISTTRALDE D+PRHRLLVLVKDHGEP+LTATATVLVSL
Sbjct: 609 ELQPAAGGSRIPFRVGLYTGEISTTRALDEADSPRHRLLVLVKDHGEPALTATATVLVSL 668

Query: 670 VESGQAPKASSRASLGIAGPETELVDVNVYLIIAICAVSSLLVLTLLLYTALRCSAPSSE 729
           VESGQAPKASSR   G A PE  LVDVNVYLIIAIC VSSLLVLTLLLYTAL  SA  +E
Sbjct: 669 VESGQAPKASSRTLAGAASPEAALVDVNVYLIIAICVVSSLLVLTLLLYTALWWSATPTE 728

Query: 730 GACSLVKPTLVCSSAVGSWSFSQQRRQRVCSGEGPPKTDLMAFSPSLPQG 779
           GAC+  KPTLVCS AVGSWS+SQQRRQRVCS EGPPKTDLMAFSPSLP G
Sbjct: 729 GACAPGKPTLVCSRAVGSWSYSQQRRQRVCSEEGPPKTDLMAFSPSLPLG 778


>gi|14165381 protocadherin alpha 10 isoform 2 precursor [Homo
           sapiens]
          Length = 844

 Score = 1178 bits (3047), Expect = 0.0
 Identities = 614/771 (79%), Positives = 662/771 (85%), Gaps = 1/771 (0%)

Query: 10  GGRHLLLFIIILAAWEAGRGQLHYSVPEEAKHGNFVGRIAQDLGLELAELVPRLFRAVCK 69
           G + LLL +++LAAWE G GQLHYSV EEA+HG FVGRIAQDLGLELAELV RLFR   K
Sbjct: 9   GVQCLLLSLLLLAAWEVGSGQLHYSVYEEARHGTFVGRIAQDLGLELAELVQRLFRVASK 68

Query: 70  FRGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVERPLQVFHVDVEVKDINDN 129
             GDLLEVNLQNGILFVNSRIDREELCGRS ECSIHLEVIV+RPLQVFHVDVEVKDINDN
Sbjct: 69  RHGDLLEVNLQNGILFVNSRIDREELCGRSVECSIHLEVIVDRPLQVFHVDVEVKDINDN 128

Query: 130 PPVFPATQRNLFIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYFFLDVPTSNQQV 189
           PP F  T++ L I ESR LDSRFPLEGASDAD+GENALLTY+LSPNEYF LD+     + 
Sbjct: 129 PPRFSVTEQKLSIPESRLLDSRFPLEGASDADVGENALLTYKLSPNEYFVLDIINKKDKD 188

Query: 190 KPLGLVLRKLLDREETPELHLLLTATDGGKPELTGTVQLLITVLDNNDNAPVFDRTLYTV 249
           K   LVLRKLLDREE P+L LLLTATDGGKPE TG+V LLI VLD NDNAP+FDR +Y V
Sbjct: 189 KFPVLVLRKLLDREENPQLKLLLTATDGGKPEFTGSVSLLILVLDANDNAPIFDRPVYEV 248

Query: 250 KLPENVSIGTLVIHPNASDLDEGLNGDIIYSFSSDVSPDIKSKFHMDPLSGAITVIGHMD 309
           K+ EN    TLVI  NASD DEG+N +++YSFSS V P I+ KF ++  +G I V   +D
Sbjct: 249 KMYENQVNQTLVIRLNASDSDEGINKEMMYSFSSLVPPTIRRKFWINERTGEIKVNDAID 308

Query: 310 FEESRAHKIPVEAVDKGFPPLAGHCTVLVEVVDVNDNAPQLTLTSLSLPIPEDAQPGTVI 369
           FE+S  ++I V+  DKG PP+ GHCTVLVE++D NDN+P++ +TSLSLP+ EDAQ GTVI
Sbjct: 309 FEDSNTYEIHVDVTDKGNPPMVGHCTVLVELLDENDNSPEVIVTSLSLPVKEDAQVGTVI 368

Query: 370 TLISVFDRDFGVNGQVTCSLTPRVPFKLVSTFKNYYSLVLDSALDRESVSAYELVVTARD 429
            LISV D D G NGQVTCSLTP VPFKLVST+KNYYSLVLDSALDRE VSAYELVVTARD
Sbjct: 369 ALISVSDHDSGANGQVTCSLTPHVPFKLVSTYKNYYSLVLDSALDRERVSAYELVVTARD 428

Query: 430 GGSPSLWATASVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAGDADAQKNAL 489
           GGSP LWATASVSVEVADVNDNAPAFAQ EYTVFVKENNPPGCHIFTVSA DADAQ+NAL
Sbjct: 429 GGSPPLWATASVSVEVADVNDNAPAFAQSEYTVFVKENNPPGCHIFTVSAWDADAQENAL 488

Query: 490 VSYSLVELRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDAGVPPLGSNV 549
           VSYSLVE R+GER+LSSYVSVHAESGKVYALQPLDHEELELLQFQVSARD GVPPLGSN+
Sbjct: 489 VSYSLVERRLGERSLSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDGGVPPLGSNL 548

Query: 550 TLQVFVLDENDNAPALLAPRVGGTGGAVRELVPRSVGAGHVVAKVRAVDADSGYNAWLSY 609
           TLQVFVLDENDNAPALLA   G  GGAV ELV RSV AGHVVAKVRAVDADSGYNAWLSY
Sbjct: 549 TLQVFVLDENDNAPALLASPAGSAGGAVSELVLRSVVAGHVVAKVRAVDADSGYNAWLSY 608

Query: 610 ELQPVAAGASIPFRVGLYTGEISTTRALDETDAPRHRLLVLVKDHGEPSLTATATVLVSL 669
           ELQ  A GA IPFRVGLYTGEISTTRALDETD+PR RLLVLVKDHGEPSLTATATVLVSL
Sbjct: 609 ELQSAAVGARIPFRVGLYTGEISTTRALDETDSPRQRLLVLVKDHGEPSLTATATVLVSL 668

Query: 670 VESGQAPKASSRASLGIAGPETELVDVNVYLIIAICAVSSLLVLTLLLYTALRCSAPSSE 729
           VE  QAPKASSRAS+G+A PE  LVDVNVYLIIAICAVSSLLVLTLLLYTALRCSA  +E
Sbjct: 669 VEGSQAPKASSRASVGVA-PEVALVDVNVYLIIAICAVSSLLVLTLLLYTALRCSAAPTE 727

Query: 730 GACSLVKPTLVCSSAVGSWSFSQQRRQRVCSGEGPPKTDLMAFSPSLPQGP 780
           GAC  VKPTLVCSSAVGSWS+SQQRRQRVCSGEG PK DLMAFSPSLP  P
Sbjct: 728 GACGPVKPTLVCSSAVGSWSYSQQRRQRVCSGEGLPKADLMAFSPSLPPCP 778


>gi|9256574 protocadherin alpha 10 isoform 1 precursor [Homo
           sapiens]
          Length = 948

 Score = 1178 bits (3047), Expect = 0.0
 Identities = 614/771 (79%), Positives = 662/771 (85%), Gaps = 1/771 (0%)

Query: 10  GGRHLLLFIIILAAWEAGRGQLHYSVPEEAKHGNFVGRIAQDLGLELAELVPRLFRAVCK 69
           G + LLL +++LAAWE G GQLHYSV EEA+HG FVGRIAQDLGLELAELV RLFR   K
Sbjct: 9   GVQCLLLSLLLLAAWEVGSGQLHYSVYEEARHGTFVGRIAQDLGLELAELVQRLFRVASK 68

Query: 70  FRGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVERPLQVFHVDVEVKDINDN 129
             GDLLEVNLQNGILFVNSRIDREELCGRS ECSIHLEVIV+RPLQVFHVDVEVKDINDN
Sbjct: 69  RHGDLLEVNLQNGILFVNSRIDREELCGRSVECSIHLEVIVDRPLQVFHVDVEVKDINDN 128

Query: 130 PPVFPATQRNLFIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYFFLDVPTSNQQV 189
           PP F  T++ L I ESR LDSRFPLEGASDAD+GENALLTY+LSPNEYF LD+     + 
Sbjct: 129 PPRFSVTEQKLSIPESRLLDSRFPLEGASDADVGENALLTYKLSPNEYFVLDIINKKDKD 188

Query: 190 KPLGLVLRKLLDREETPELHLLLTATDGGKPELTGTVQLLITVLDNNDNAPVFDRTLYTV 249
           K   LVLRKLLDREE P+L LLLTATDGGKPE TG+V LLI VLD NDNAP+FDR +Y V
Sbjct: 189 KFPVLVLRKLLDREENPQLKLLLTATDGGKPEFTGSVSLLILVLDANDNAPIFDRPVYEV 248

Query: 250 KLPENVSIGTLVIHPNASDLDEGLNGDIIYSFSSDVSPDIKSKFHMDPLSGAITVIGHMD 309
           K+ EN    TLVI  NASD DEG+N +++YSFSS V P I+ KF ++  +G I V   +D
Sbjct: 249 KMYENQVNQTLVIRLNASDSDEGINKEMMYSFSSLVPPTIRRKFWINERTGEIKVNDAID 308

Query: 310 FEESRAHKIPVEAVDKGFPPLAGHCTVLVEVVDVNDNAPQLTLTSLSLPIPEDAQPGTVI 369
           FE+S  ++I V+  DKG PP+ GHCTVLVE++D NDN+P++ +TSLSLP+ EDAQ GTVI
Sbjct: 309 FEDSNTYEIHVDVTDKGNPPMVGHCTVLVELLDENDNSPEVIVTSLSLPVKEDAQVGTVI 368

Query: 370 TLISVFDRDFGVNGQVTCSLTPRVPFKLVSTFKNYYSLVLDSALDRESVSAYELVVTARD 429
            LISV D D G NGQVTCSLTP VPFKLVST+KNYYSLVLDSALDRE VSAYELVVTARD
Sbjct: 369 ALISVSDHDSGANGQVTCSLTPHVPFKLVSTYKNYYSLVLDSALDRERVSAYELVVTARD 428

Query: 430 GGSPSLWATASVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAGDADAQKNAL 489
           GGSP LWATASVSVEVADVNDNAPAFAQ EYTVFVKENNPPGCHIFTVSA DADAQ+NAL
Sbjct: 429 GGSPPLWATASVSVEVADVNDNAPAFAQSEYTVFVKENNPPGCHIFTVSAWDADAQENAL 488

Query: 490 VSYSLVELRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDAGVPPLGSNV 549
           VSYSLVE R+GER+LSSYVSVHAESGKVYALQPLDHEELELLQFQVSARD GVPPLGSN+
Sbjct: 489 VSYSLVERRLGERSLSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDGGVPPLGSNL 548

Query: 550 TLQVFVLDENDNAPALLAPRVGGTGGAVRELVPRSVGAGHVVAKVRAVDADSGYNAWLSY 609
           TLQVFVLDENDNAPALLA   G  GGAV ELV RSV AGHVVAKVRAVDADSGYNAWLSY
Sbjct: 549 TLQVFVLDENDNAPALLASPAGSAGGAVSELVLRSVVAGHVVAKVRAVDADSGYNAWLSY 608

Query: 610 ELQPVAAGASIPFRVGLYTGEISTTRALDETDAPRHRLLVLVKDHGEPSLTATATVLVSL 669
           ELQ  A GA IPFRVGLYTGEISTTRALDETD+PR RLLVLVKDHGEPSLTATATVLVSL
Sbjct: 609 ELQSAAVGARIPFRVGLYTGEISTTRALDETDSPRQRLLVLVKDHGEPSLTATATVLVSL 668

Query: 670 VESGQAPKASSRASLGIAGPETELVDVNVYLIIAICAVSSLLVLTLLLYTALRCSAPSSE 729
           VE  QAPKASSRAS+G+A PE  LVDVNVYLIIAICAVSSLLVLTLLLYTALRCSA  +E
Sbjct: 669 VEGSQAPKASSRASVGVA-PEVALVDVNVYLIIAICAVSSLLVLTLLLYTALRCSAAPTE 727

Query: 730 GACSLVKPTLVCSSAVGSWSFSQQRRQRVCSGEGPPKTDLMAFSPSLPQGP 780
           GAC  VKPTLVCSSAVGSWS+SQQRRQRVCSGEG PK DLMAFSPSLP  P
Sbjct: 728 GACGPVKPTLVCSSAVGSWSYSQQRRQRVCSGEGLPKADLMAFSPSLPPCP 778


>gi|14165392 protocadherin alpha 12 isoform 2 precursor [Homo
           sapiens]
          Length = 792

 Score = 1167 bits (3020), Expect = 0.0
 Identities = 606/776 (78%), Positives = 654/776 (84%), Gaps = 2/776 (0%)

Query: 1   MVCPNGYDPGGRHLLLFIIILAAWEAGRGQLHYSVPEEAKHGNFVGRIAQDLGLELAELV 60
           ++ P G  PG + LLL +++LAAWE G GQLHYSV EEAKHG FVGRIAQDLGLELAELV
Sbjct: 3   IIGPRG--PGSQRLLLSLLLLAAWEVGSGQLHYSVYEEAKHGTFVGRIAQDLGLELAELV 60

Query: 61  PRLFRAVCKFRGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVERPLQVFHVD 120
           PRLFR   K  GDLLEVNLQNGILFVNSRIDRE+LCGRSAECSIHLEVIV+RPLQVFHVD
Sbjct: 61  PRLFRVASKRHGDLLEVNLQNGILFVNSRIDREKLCGRSAECSIHLEVIVDRPLQVFHVD 120

Query: 121 VEVKDINDNPPVFPATQRNLFIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYFFL 180
           VEVKDINDNPPVF   ++ + ++ES PLDS FPLEGASDADIG N+LLTY LS NE F L
Sbjct: 121 VEVKDINDNPPVFREREQKVPVSESAPLDSHFPLEGASDADIGVNSLLTYALSLNENFEL 180

Query: 181 DVPTSNQQVKPLGLVLRKLLDREETPELHLLLTATDGGKPELTGTVQLLITVLDNNDNAP 240
            + T   +     LVLRKLLDRE+TP+L+LLL   DGGKPELTG+VQ+ ITVLD NDN P
Sbjct: 181 KIKTKKDKSILPELVLRKLLDREQTPKLNLLLMVIDGGKPELTGSVQIQITVLDVNDNGP 240

Query: 241 VFDRTLYTVKLPENVSIGTLVIHPNASDLDEGLNGDIIYSFSSDVSPDIKSKFHMDPLSG 300
            FD+  Y V L ENV   T VI  NASD DEGLNG+I Y     +    K  F ++P +G
Sbjct: 241 AFDKPSYKVVLSENVQNDTRVIQLNASDPDEGLNGEISYGIKMILPVSEKCMFSINPDTG 300

Query: 301 AITVIGHMDFEESRAHKIPVEAVDKGFPPLAGHCTVLVEVVDVNDNAPQLTLTSLSLPIP 360
            I + G +DFEE+ A++I V A+DKG P +AGH  VLVEV+DVNDN P++ +TSLSLP+ 
Sbjct: 301 EIRIYGELDFEENNAYEIQVNAIDKGIPSMAGHSMVLVEVLDVNDNVPEVMVTSLSLPVQ 360

Query: 361 EDAQPGTVITLISVFDRDFGVNGQVTCSLTPRVPFKLVSTFKNYYSLVLDSALDRESVSA 420
           EDAQ GTVI LISV DRD G NGQV CSLTP VPFKLVST+KNYYSLVLDSALDRESVSA
Sbjct: 361 EDAQVGTVIALISVSDRDSGANGQVICSLTPHVPFKLVSTYKNYYSLVLDSALDRESVSA 420

Query: 421 YELVVTARDGGSPSLWATASVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAG 480
           YELVVTARDGGSPSLWATA VSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSA 
Sbjct: 421 YELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAW 480

Query: 481 DADAQKNALVSYSLVELRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDA 540
           DADAQKNALVSYSLVE RVGE ALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDA
Sbjct: 481 DADAQKNALVSYSLVERRVGEHALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDA 540

Query: 541 GVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTGGAVRELVPRSVGAGHVVAKVRAVDAD 600
           GVPPLGSNVTLQVFVLDENDNAPALLA   G  GGAV ELVPRSVGAGHVVAKVRAVDAD
Sbjct: 541 GVPPLGSNVTLQVFVLDENDNAPALLATPAGSAGGAVSELVPRSVGAGHVVAKVRAVDAD 600

Query: 601 SGYNAWLSYELQPVAAGASIPFRVGLYTGEISTTRALDETDAPRHRLLVLVKDHGEPSLT 660
           SGYNAWLSYELQP A GA IPF VGLYTGEISTTR LDE DAPRHRLLVLVKDHGEP+LT
Sbjct: 601 SGYNAWLSYELQPAAVGAHIPFHVGLYTGEISTTRILDEADAPRHRLLVLVKDHGEPALT 660

Query: 661 ATATVLVSLVESGQAPKASSRASLGIAGPETELVDVNVYLIIAICAVSSLLVLTLLLYTA 720
           +TATVLVSLVE+GQAPK SSRAS+G   PE  LVD+NVYLIIAICAVSSLLVLTLLLYTA
Sbjct: 661 STATVLVSLVENGQAPKTSSRASVGAVDPEAALVDINVYLIIAICAVSSLLVLTLLLYTA 720

Query: 721 LRCSAPSSEGACSLVKPTLVCSSAVGSWSFSQQRRQRVCSGEGPPKTDLMAFSPSL 776
           LRCSAP +   C+  KPTLVCSSAVGSWS+SQQRRQRVCS E PPKTDLMAFSPSL
Sbjct: 721 LRCSAPPTVSRCAPGKPTLVCSSAVGSWSYSQQRRQRVCSAESPPKTDLMAFSPSL 776


>gi|9256578 protocadherin alpha 12 isoform 1 precursor [Homo
           sapiens]
          Length = 941

 Score = 1167 bits (3020), Expect = 0.0
 Identities = 606/776 (78%), Positives = 654/776 (84%), Gaps = 2/776 (0%)

Query: 1   MVCPNGYDPGGRHLLLFIIILAAWEAGRGQLHYSVPEEAKHGNFVGRIAQDLGLELAELV 60
           ++ P G  PG + LLL +++LAAWE G GQLHYSV EEAKHG FVGRIAQDLGLELAELV
Sbjct: 3   IIGPRG--PGSQRLLLSLLLLAAWEVGSGQLHYSVYEEAKHGTFVGRIAQDLGLELAELV 60

Query: 61  PRLFRAVCKFRGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVERPLQVFHVD 120
           PRLFR   K  GDLLEVNLQNGILFVNSRIDRE+LCGRSAECSIHLEVIV+RPLQVFHVD
Sbjct: 61  PRLFRVASKRHGDLLEVNLQNGILFVNSRIDREKLCGRSAECSIHLEVIVDRPLQVFHVD 120

Query: 121 VEVKDINDNPPVFPATQRNLFIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYFFL 180
           VEVKDINDNPPVF   ++ + ++ES PLDS FPLEGASDADIG N+LLTY LS NE F L
Sbjct: 121 VEVKDINDNPPVFREREQKVPVSESAPLDSHFPLEGASDADIGVNSLLTYALSLNENFEL 180

Query: 181 DVPTSNQQVKPLGLVLRKLLDREETPELHLLLTATDGGKPELTGTVQLLITVLDNNDNAP 240
            + T   +     LVLRKLLDRE+TP+L+LLL   DGGKPELTG+VQ+ ITVLD NDN P
Sbjct: 181 KIKTKKDKSILPELVLRKLLDREQTPKLNLLLMVIDGGKPELTGSVQIQITVLDVNDNGP 240

Query: 241 VFDRTLYTVKLPENVSIGTLVIHPNASDLDEGLNGDIIYSFSSDVSPDIKSKFHMDPLSG 300
            FD+  Y V L ENV   T VI  NASD DEGLNG+I Y     +    K  F ++P +G
Sbjct: 241 AFDKPSYKVVLSENVQNDTRVIQLNASDPDEGLNGEISYGIKMILPVSEKCMFSINPDTG 300

Query: 301 AITVIGHMDFEESRAHKIPVEAVDKGFPPLAGHCTVLVEVVDVNDNAPQLTLTSLSLPIP 360
            I + G +DFEE+ A++I V A+DKG P +AGH  VLVEV+DVNDN P++ +TSLSLP+ 
Sbjct: 301 EIRIYGELDFEENNAYEIQVNAIDKGIPSMAGHSMVLVEVLDVNDNVPEVMVTSLSLPVQ 360

Query: 361 EDAQPGTVITLISVFDRDFGVNGQVTCSLTPRVPFKLVSTFKNYYSLVLDSALDRESVSA 420
           EDAQ GTVI LISV DRD G NGQV CSLTP VPFKLVST+KNYYSLVLDSALDRESVSA
Sbjct: 361 EDAQVGTVIALISVSDRDSGANGQVICSLTPHVPFKLVSTYKNYYSLVLDSALDRESVSA 420

Query: 421 YELVVTARDGGSPSLWATASVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAG 480
           YELVVTARDGGSPSLWATA VSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSA 
Sbjct: 421 YELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAW 480

Query: 481 DADAQKNALVSYSLVELRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDA 540
           DADAQKNALVSYSLVE RVGE ALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDA
Sbjct: 481 DADAQKNALVSYSLVERRVGEHALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDA 540

Query: 541 GVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTGGAVRELVPRSVGAGHVVAKVRAVDAD 600
           GVPPLGSNVTLQVFVLDENDNAPALLA   G  GGAV ELVPRSVGAGHVVAKVRAVDAD
Sbjct: 541 GVPPLGSNVTLQVFVLDENDNAPALLATPAGSAGGAVSELVPRSVGAGHVVAKVRAVDAD 600

Query: 601 SGYNAWLSYELQPVAAGASIPFRVGLYTGEISTTRALDETDAPRHRLLVLVKDHGEPSLT 660
           SGYNAWLSYELQP A GA IPF VGLYTGEISTTR LDE DAPRHRLLVLVKDHGEP+LT
Sbjct: 601 SGYNAWLSYELQPAAVGAHIPFHVGLYTGEISTTRILDEADAPRHRLLVLVKDHGEPALT 660

Query: 661 ATATVLVSLVESGQAPKASSRASLGIAGPETELVDVNVYLIIAICAVSSLLVLTLLLYTA 720
           +TATVLVSLVE+GQAPK SSRAS+G   PE  LVD+NVYLIIAICAVSSLLVLTLLLYTA
Sbjct: 661 STATVLVSLVENGQAPKTSSRASVGAVDPEAALVDINVYLIIAICAVSSLLVLTLLLYTA 720

Query: 721 LRCSAPSSEGACSLVKPTLVCSSAVGSWSFSQQRRQRVCSGEGPPKTDLMAFSPSL 776
           LRCSAP +   C+  KPTLVCSSAVGSWS+SQQRRQRVCS E PPKTDLMAFSPSL
Sbjct: 721 LRCSAPPTVSRCAPGKPTLVCSSAVGSWSYSQQRRQRVCSAESPPKTDLMAFSPSL 776


>gi|14165402 protocadherin alpha 1 isoform 3 precursor [Homo
           sapiens]
          Length = 686

 Score =  786 bits (2029), Expect = 0.0
 Identities = 398/525 (75%), Positives = 450/525 (85%)

Query: 10  GGRHLLLFIIILAAWEAGRGQLHYSVPEEAKHGNFVGRIAQDLGLELAELVPRLFRAVCK 69
           G R LLL++++LAAWE G GQLHYS+PEEAKHG FVGR+AQDLGLELAELVPRLFR   K
Sbjct: 10  GARDLLLWLLLLAAWEVGSGQLHYSIPEEAKHGTFVGRVAQDLGLELAELVPRLFRVASK 69

Query: 70  FRGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVERPLQVFHVDVEVKDINDN 129
              DLLEVNLQNGILFVNSRIDREELC  SAECSIHLE+I +RPLQVFHV+V+VKDINDN
Sbjct: 70  THRDLLEVNLQNGILFVNSRIDREELCQWSAECSIHLELIADRPLQVFHVEVKVKDINDN 129

Query: 130 PPVFPATQRNLFIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYFFLDVPTSNQQV 189
           PPVF   ++ +FI ESR L+SRFP+EGA+DADIG NALLTY LSP++YF LDV  S++  
Sbjct: 130 PPVFRGREQIIFIPESRLLNSRFPIEGAADADIGANALLTYTLSPSDYFSLDVEASDELS 189

Query: 190 KPLGLVLRKLLDREETPELHLLLTATDGGKPELTGTVQLLITVLDNNDNAPVFDRTLYTV 249
           K L L LRK LDREETPELHLLLTATDGGKPEL GTV+LLITVLD NDNAP+FD+ +Y V
Sbjct: 190 KSLWLELRKYLDREETPELHLLLTATDGGKPELQGTVELLITVLDVNDNAPLFDQAVYRV 249

Query: 250 KLPENVSIGTLVIHPNASDLDEGLNGDIIYSFSSDVSPDIKSKFHMDPLSGAITVIGHMD 309
            L E  + GTLV   NASD DEG+NG++++SF S +S DI+ KF +D  SG I +I  +D
Sbjct: 250 HLLETTANGTLVTTLNASDADEGVNGEVVFSFDSGISRDIQEKFKVDSSSGEIRLIDKLD 309

Query: 310 FEESRAHKIPVEAVDKGFPPLAGHCTVLVEVVDVNDNAPQLTLTSLSLPIPEDAQPGTVI 369
           +EE+++++I V+AVDKG PP++ HC VLV+V+DVNDNAP+L +TSL LPI EDA   TVI
Sbjct: 310 YEETKSYEIQVKAVDKGSPPMSNHCKVLVKVLDVNDNAPELAVTSLYLPIREDAPLSTVI 369

Query: 370 TLISVFDRDFGVNGQVTCSLTPRVPFKLVSTFKNYYSLVLDSALDRESVSAYELVVTARD 429
            LI+V DRD G NGQVTCSL P VPFKLVSTFKNYYSLVLDSALDRES+S YELVVTARD
Sbjct: 370 ALITVSDRDSGANGQVTCSLMPHVPFKLVSTFKNYYSLVLDSALDRESLSVYELVVTARD 429

Query: 430 GGSPSLWATASVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAGDADAQKNAL 489
           GGSPSLWATA VSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSA DADAQ+NAL
Sbjct: 430 GGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSARDADAQENAL 489

Query: 490 VSYSLVELRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQ 534
           VSYSLVE RVGERALS+YVSVHAESGKVYALQPLDHEELELLQFQ
Sbjct: 490 VSYSLVERRVGERALSNYVSVHAESGKVYALQPLDHEELELLQFQ 534



 Score =  151 bits (381), Expect = 3e-36
 Identities = 133/431 (30%), Positives = 202/431 (46%), Gaps = 33/431 (7%)

Query: 194 LVLRKLLDREETPE------LHLLLTATDGGKPELTGTVQLLITVLDNNDNAPVFDRTLY 247
           L +   +DREE  +      +HL L A    +P     V+  + V D NDN PVF     
Sbjct: 84  LFVNSRIDREELCQWSAECSIHLELIAD---RPLQVFHVE--VKVKDINDNPPVFRGREQ 138

Query: 248 TVKLPENVSIGTLVIHPNASDLDEGLNGDIIYSFSSD--VSPDIKSKFHMDPLSGAI--T 303
            + +PE+  + +      A+D D G N  + Y+ S     S D+++    D LS ++   
Sbjct: 139 IIFIPESRLLNSRFPIEGAADADIGANALLTYTLSPSDYFSLDVEAS---DELSKSLWLE 195

Query: 304 VIGHMDFEESRAHKIPVEAVDKGFPPLAGHCTVLVEVVDVNDNAPQLTLTSLSLPIPEDA 363
           +  ++D EE+    + + A D G P L G   +L+ V+DVNDNAP        + + E  
Sbjct: 196 LRKYLDREETPELHLLLTATDGGKPELQGTVELLITVLDVNDNAPLFDQAVYRVHLLETT 255

Query: 364 QPGTVITLISVFDRDFGVNGQVTCSLTPRVPFKLVSTFKNYYS---LVLDSALDRESVSA 420
             GT++T ++  D D GVNG+V  S    +   +   FK   S   + L   LD E   +
Sbjct: 256 ANGTLVTTLNASDADEGVNGEVVFSFDSGISRDIQEKFKVDSSSGEIRLIDKLDYEETKS 315

Query: 421 YELVVTARDGGSPSLWATASVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAG 480
           YE+ V A D GSP +     V V+V DVNDNAP  A     + ++E+ P    I  ++  
Sbjct: 316 YEIQVKAVDKGSPPMSNHCKVLVKVLDVNDNAPELAVTSLYLPIREDAPLSTVIALITVS 375

Query: 481 DADAQKNALVSYSLVELRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDA 540
           D D+  N  V+ SL+   V  + +S++ + ++    +     LD E L + +  V+ARD 
Sbjct: 376 DRDSGANGQVTCSLMP-HVPFKLVSTFKNYYS----LVLDSALDRESLSVYELVVTARDG 430

Query: 541 GVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTGGAVRELVPRSVGAGHVVAKVRAVDAD 600
           G P L +   + V V D NDNAPA   P            V  +   G  +  V A DAD
Sbjct: 431 GSPSLWATARVSVEVADVNDNAPAFAQPE-------YTVFVKENNPPGCHIFTVSARDAD 483

Query: 601 SGYNAWLSYEL 611
           +  NA +SY L
Sbjct: 484 AQENALVSYSL 494



 Score =  148 bits (374), Expect = 2e-35
 Identities = 116/343 (33%), Positives = 159/343 (46%), Gaps = 21/343 (6%)

Query: 336 VLVEVVDVNDNAPQLTLTSLSLPIPEDAQPGTVITLISVFDRDFGVNGQVTCSLTPRVPF 395
           V V+V D+NDN P        + IPE     +   +    D D G N  +T +L+P   F
Sbjct: 119 VEVKVKDINDNPPVFRGREQIIFIPESRLLNSRFPIEGAADADIGANALLTYTLSPSDYF 178

Query: 396 KLVSTFKNYYS----LVLDSALDRESVSAYELVVTARDGGSPSLWATASVSVEVADVNDN 451
            L     +  S    L L   LDRE      L++TA DGG P L  T  + + V DVNDN
Sbjct: 179 SLDVEASDELSKSLWLELRKYLDREETPELHLLLTATDGGKPELQGTVELLITVLDVNDN 238

Query: 452 APAFAQPEYTVFVKENNPPGCHIFTVSAGDADAQKNALVSYSLVELRVGERALSSYVSVH 511
           AP F Q  Y V + E    G  + T++A DAD   N  V +S        R +     V 
Sbjct: 239 APLFDQAVYRVHLLETTANGTLVTTLNASDADEGVNGEVVFSFDSGI--SRDIQEKFKVD 296

Query: 512 AESGKVYALQPLDHEELELLQFQVSARDAGVPPLGSNVTLQVFVLDENDNAPALLAPRVG 571
           + SG++  +  LD+EE +  + QV A D G PP+ ++  + V VLD NDNAP L    V 
Sbjct: 297 SSSGEIRLIDKLDYEETKSYEIQVKAVDKGSPPMSNHCKVLVKVLDVNDNAPEL---AVT 353

Query: 572 GTGGAVRELVPRSVGAGHVVAKVRAVDADSGYNAWLSYELQPVAAGASIPFR-VGLYTGE 630
                +RE  P S     V+A +   D DSG N  ++  L P      +PF+ V  +   
Sbjct: 354 SLYLPIREDAPLST----VIALITVSDRDSGANGQVTCSLMP-----HVPFKLVSTFKNY 404

Query: 631 ISTT--RALDETDAPRHRLLVLVKDHGEPSLTATATVLVSLVE 671
            S     ALD      + L+V  +D G PSL ATA V V + +
Sbjct: 405 YSLVLDSALDRESLSVYELVVTARDGGSPSLWATARVSVEVAD 447


>gi|14165383 protocadherin alpha 10 isoform 3 precursor [Homo
           sapiens]
          Length = 685

 Score =  778 bits (2008), Expect = 0.0
 Identities = 401/525 (76%), Positives = 443/525 (84%)

Query: 10  GGRHLLLFIIILAAWEAGRGQLHYSVPEEAKHGNFVGRIAQDLGLELAELVPRLFRAVCK 69
           G + LLL +++LAAWE G GQLHYSV EEA+HG FVGRIAQDLGLELAELV RLFR   K
Sbjct: 9   GVQCLLLSLLLLAAWEVGSGQLHYSVYEEARHGTFVGRIAQDLGLELAELVQRLFRVASK 68

Query: 70  FRGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVERPLQVFHVDVEVKDINDN 129
             GDLLEVNLQNGILFVNSRIDREELCGRS ECSIHLEVIV+RPLQVFHVDVEVKDINDN
Sbjct: 69  RHGDLLEVNLQNGILFVNSRIDREELCGRSVECSIHLEVIVDRPLQVFHVDVEVKDINDN 128

Query: 130 PPVFPATQRNLFIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYFFLDVPTSNQQV 189
           PP F  T++ L I ESR LDSRFPLEGASDAD+GENALLTY+LSPNEYF LD+     + 
Sbjct: 129 PPRFSVTEQKLSIPESRLLDSRFPLEGASDADVGENALLTYKLSPNEYFVLDIINKKDKD 188

Query: 190 KPLGLVLRKLLDREETPELHLLLTATDGGKPELTGTVQLLITVLDNNDNAPVFDRTLYTV 249
           K   LVLRKLLDREE P+L LLLTATDGGKPE TG+V LLI VLD NDNAP+FDR +Y V
Sbjct: 189 KFPVLVLRKLLDREENPQLKLLLTATDGGKPEFTGSVSLLILVLDANDNAPIFDRPVYEV 248

Query: 250 KLPENVSIGTLVIHPNASDLDEGLNGDIIYSFSSDVSPDIKSKFHMDPLSGAITVIGHMD 309
           K+ EN    TLVI  NASD DEG+N +++YSFSS V P I+ KF ++  +G I V   +D
Sbjct: 249 KMYENQVNQTLVIRLNASDSDEGINKEMMYSFSSLVPPTIRRKFWINERTGEIKVNDAID 308

Query: 310 FEESRAHKIPVEAVDKGFPPLAGHCTVLVEVVDVNDNAPQLTLTSLSLPIPEDAQPGTVI 369
           FE+S  ++I V+  DKG PP+ GHCTVLVE++D NDN+P++ +TSLSLP+ EDAQ GTVI
Sbjct: 309 FEDSNTYEIHVDVTDKGNPPMVGHCTVLVELLDENDNSPEVIVTSLSLPVKEDAQVGTVI 368

Query: 370 TLISVFDRDFGVNGQVTCSLTPRVPFKLVSTFKNYYSLVLDSALDRESVSAYELVVTARD 429
            LISV D D G NGQVTCSLTP VPFKLVST+KNYYSLVLDSALDRE VSAYELVVTARD
Sbjct: 369 ALISVSDHDSGANGQVTCSLTPHVPFKLVSTYKNYYSLVLDSALDRERVSAYELVVTARD 428

Query: 430 GGSPSLWATASVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAGDADAQKNAL 489
           GGSP LWATASVSVEVADVNDNAPAFAQ EYTVFVKENNPPGCHIFTVSA DADAQ+NAL
Sbjct: 429 GGSPPLWATASVSVEVADVNDNAPAFAQSEYTVFVKENNPPGCHIFTVSAWDADAQENAL 488

Query: 490 VSYSLVELRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQ 534
           VSYSLVE R+GER+LSSYVSVHAESGKVYALQPLDHEELELLQFQ
Sbjct: 489 VSYSLVERRLGERSLSSYVSVHAESGKVYALQPLDHEELELLQFQ 533



 Score =  143 bits (361), Expect = 5e-34
 Identities = 109/373 (29%), Positives = 167/373 (44%), Gaps = 21/373 (5%)

Query: 338 VEVVDVNDNAPQLTLTSLSLPIPEDAQPGTVITLISVFDRDFGVNGQVTCSLTPRVPFKL 397
           VEV D+NDN P+ ++T   L IPE     +   L    D D G N  +T  L+P   F L
Sbjct: 120 VEVKDINDNPPRFSVTEQKLSIPESRLLDSRFPLEGASDADVGENALLTYKLSPNEYFVL 179

Query: 398 VSTFKN----YYSLVLDSALDRESVSAYELVVTARDGGSPSLWATASVSVEVADVNDNAP 453
               K     +  LVL   LDRE     +L++TA DGG P    + S+ + V D NDNAP
Sbjct: 180 DIINKKDKDKFPVLVLRKLLDREENPQLKLLLTATDGGKPEFTGSVSLLILVLDANDNAP 239

Query: 454 AFAQPEYTVFVKENNPPGCHIFTVSAGDADAQKNALVSYSLVELRVGERALSSYVSVHAE 513
            F +P Y V + EN      +  ++A D+D   N  + YS   L      +     ++  
Sbjct: 240 IFDRPVYEVKMYENQVNQTLVIRLNASDSDEGINKEMMYSFSSLV--PPTIRRKFWINER 297

Query: 514 SGKVYALQPLDHEELELLQFQVSARDAGVPPLGSNVTLQVFVLDENDNAPALLAPRVGGT 573
           +G++     +D E+    +  V   D G PP+  + T+ V +LDENDN+P ++   +   
Sbjct: 298 TGEIKVNDAIDFEDSNTYEIHVDVTDKGNPPMVGHCTVLVELLDENDNSPEVIVTSLSLP 357

Query: 574 GGAVRELVPRSVGAGHVVAKVRAVDADSGYNAWLSYELQPVAAGASIPFR-VGLYTGEIS 632
                  V      G V+A +   D DSG N  ++  L P      +PF+ V  Y    S
Sbjct: 358 -------VKEDAQVGTVIALISVSDHDSGANGQVTCSLTP-----HVPFKLVSTYKNYYS 405

Query: 633 TT--RALDETDAPRHRLLVLVKDHGEPSLTATATVLVSLVESGQAPKASSRASLGIAGPE 690
                ALD      + L+V  +D G P L ATA+V V + +      A +++   +   E
Sbjct: 406 LVLDSALDRERVSAYELVVTARDGGSPPLWATASVSVEVADVNDNAPAFAQSEYTVFVKE 465

Query: 691 TELVDVNVYLIIA 703
                 +++ + A
Sbjct: 466 NNPPGCHIFTVSA 478



 Score =  136 bits (343), Expect = 7e-32
 Identities = 113/387 (29%), Positives = 179/387 (46%), Gaps = 18/387 (4%)

Query: 230 ITVLDNNDNAPVFDRTLYTVKLPENVSIGTLVIHPNASDLDEGLNGDIIYSFSSD--VSP 287
           + V D NDN P F  T   + +PE+  + +      ASD D G N  + Y  S +     
Sbjct: 120 VEVKDINDNPPRFSVTEQKLSIPESRLLDSRFPLEGASDADVGENALLTYKLSPNEYFVL 179

Query: 288 DIKSKFHMDPLSGAITVIGHMDFEESRAHKIPVEAVDKGFPPLAGHCTVLVEVVDVNDNA 347
           DI +K   D     + +   +D EE+   K+ + A D G P   G  ++L+ V+D NDNA
Sbjct: 180 DIINKKDKDKFP-VLVLRKLLDREENPQLKLLLTATDGGKPEFTGSVSLLILVLDANDNA 238

Query: 348 PQLTLTSLSLPIPEDAQPGTVITLISVFDRDFGVNGQVTCSLTPRVPFKLVSTF---KNY 404
           P        + + E+    T++  ++  D D G+N ++  S +  VP  +   F   +  
Sbjct: 239 PIFDRPVYEVKMYENQVNQTLVIRLNASDSDEGINKEMMYSFSSLVPPTIRRKFWINERT 298

Query: 405 YSLVLDSALDRESVSAYELVVTARDGGSPSLWATASVSVEVADVNDNAPAFAQPEYTVFV 464
             + ++ A+D E  + YE+ V   D G+P +    +V VE+ D NDN+P       ++ V
Sbjct: 299 GEIKVNDAIDFEDSNTYEIHVDVTDKGNPPMVGHCTVLVELLDENDNSPEVIVTSLSLPV 358

Query: 465 KENNPPGCHIFTVSAGDADAQKNALVSYSLVELRVGERALSSYVSVHAESGKVYALQPLD 524
           KE+   G  I  +S  D D+  N  V+ SL    V  + +S+Y + ++    +     LD
Sbjct: 359 KEDAQVGTVIALISVSDHDSGANGQVTCSLTP-HVPFKLVSTYKNYYS----LVLDSALD 413

Query: 525 HEELELLQFQVSARDAGVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTGGAVRELVPRS 584
            E +   +  V+ARD G PPL +  ++ V V D NDNAPA                V  +
Sbjct: 414 RERVSAYELVVTARDGGSPPLWATASVSVEVADVNDNAPAF-------AQSEYTVFVKEN 466

Query: 585 VGAGHVVAKVRAVDADSGYNAWLSYEL 611
              G  +  V A DAD+  NA +SY L
Sbjct: 467 NPPGCHIFTVSAWDADAQENALVSYSL 493



 Score = 88.2 bits (217), Expect = 3e-17
 Identities = 81/271 (29%), Positives = 115/271 (42%), Gaps = 17/271 (6%)

Query: 441 VSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAGDADAQKNALVSYSLVELRVG 500
           V VEV D+NDN P F+  E  + + E+           A DAD  +NAL++Y L      
Sbjct: 118 VDVEVKDINDNPPRFSVTEQKLSIPESRLLDSRFPLEGASDADVGENALLTYKLSPNEYF 177

Query: 501 ERALSSYVSVHAESGKVYALQPL-DHEELELLQFQVSARDAGVPPLGSNVTLQVFVLDEN 559
              L        +   V  L+ L D EE   L+  ++A D G P    +V+L + VLD N
Sbjct: 178 --VLDIINKKDKDKFPVLVLRKLLDREENPQLKLLLTATDGGKPEFTGSVSLLILVLDAN 235

Query: 560 DNAPALLAPRVGGTGGAVRELVPRSVGAGH-VVAKVRAVDADSGYNAWLSYELQP-VAAG 617
           DNAP    P        V E+          +V ++ A D+D G N  + Y     V   
Sbjct: 236 DNAPIFDRP--------VYEVKMYENQVNQTLVIRLNASDSDEGINKEMMYSFSSLVPPT 287

Query: 618 ASIPFRVGLYTGEISTTRALDETDAPRHRLLVLVKDHGEPSLTATATVLVSLVESGQAPK 677
               F +   TGEI    A+D  D+  + + V V D G P +    TVLV L++      
Sbjct: 288 IRRKFWINERTGEIKVNDAIDFEDSNTYEIHVDVTDKGNPPMVGHCTVLVELLDENDNSP 347

Query: 678 ASSRASLGIAGPETELVDVNVYLIIAICAVS 708
                SL +   E    D  V  +IA+ +VS
Sbjct: 348 EVIVTSLSLPVKE----DAQVGTVIALISVS 374


>gi|14165394 protocadherin alpha 6 isoform 3 precursor [Homo
           sapiens]
          Length = 686

 Score =  774 bits (1999), Expect = 0.0
 Identities = 394/525 (75%), Positives = 444/525 (84%)

Query: 10  GGRHLLLFIIILAAWEAGRGQLHYSVPEEAKHGNFVGRIAQDLGLELAELVPRLFRAVCK 69
           G + LLL +++LAAW+ G GQLHYSVPEEAKHG FVGRIAQDLGLELAELVPRLFR   K
Sbjct: 10  GKQCLLLPLLLLAAWKVGSGQLHYSVPEEAKHGTFVGRIAQDLGLELAELVPRLFRMASK 69

Query: 70  FRGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVERPLQVFHVDVEVKDINDN 129
            R DLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIV+RPLQVFHVDVEV+DINDN
Sbjct: 70  DREDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVDVEVRDINDN 129

Query: 130 PPVFPATQRNLFIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYFFLDVPTSNQQV 189
           PP+FP  ++ + I ESR  DS FPLEGASDAD+G N++LTY+LS +EYF LDV  ++   
Sbjct: 130 PPLFPVEEQRVLIYESRLPDSVFPLEGASDADVGSNSILTYKLSSSEYFGLDVKINSDDN 189

Query: 190 KPLGLVLRKLLDREETPELHLLLTATDGGKPELTGTVQLLITVLDNNDNAPVFDRTLYTV 249
           K +GL+L+K LDREE P  +L LTATDGGKPELTGTVQLL+TVLD NDNAP F+++ Y V
Sbjct: 190 KQIGLLLKKSLDREEAPAHNLFLTATDGGKPELTGTVQLLVTVLDVNDNAPTFEQSEYEV 249

Query: 250 KLPENVSIGTLVIHPNASDLDEGLNGDIIYSFSSDVSPDIKSKFHMDPLSGAITVIGHMD 309
           ++ EN   GT VI  NASD DEG NG I YSF+S V+  +   F +D  +G I + G++D
Sbjct: 250 RIFENADNGTTVIRLNASDRDEGANGAISYSFNSLVAAMVIDHFSIDRNTGEIVIRGNLD 309

Query: 310 FEESRAHKIPVEAVDKGFPPLAGHCTVLVEVVDVNDNAPQLTLTSLSLPIPEDAQPGTVI 369
           FE+   +KI ++A DKG PP+AGHCTVLV ++D NDN P++ LTSLSLP+ EDAQ GTVI
Sbjct: 310 FEQENLYKILIDATDKGHPPMAGHCTVLVRILDKNDNVPEIALTSLSLPVREDAQFGTVI 369

Query: 370 TLISVFDRDFGVNGQVTCSLTPRVPFKLVSTFKNYYSLVLDSALDRESVSAYELVVTARD 429
            LISV D D G NGQV CSLTP VPFKLVSTFKNYYSLVLDSALDRESVSAYELVVTARD
Sbjct: 370 ALISVNDLDSGANGQVNCSLTPHVPFKLVSTFKNYYSLVLDSALDRESVSAYELVVTARD 429

Query: 430 GGSPSLWATASVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAGDADAQKNAL 489
           GGSPSLWATAS+SVEVAD+NDNAPAFAQPEYTVFVKENNPPGCHIFTVSA DADAQ+NAL
Sbjct: 430 GGSPSLWATASLSVEVADMNDNAPAFAQPEYTVFVKENNPPGCHIFTVSARDADAQENAL 489

Query: 490 VSYSLVELRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQ 534
           VSYSLVE RVGERALSSY+SVHAESGKVYALQPLDHEELELLQFQ
Sbjct: 490 VSYSLVERRVGERALSSYISVHAESGKVYALQPLDHEELELLQFQ 534



 Score =  157 bits (396), Expect = 5e-38
 Identities = 116/373 (31%), Positives = 170/373 (45%), Gaps = 21/373 (5%)

Query: 338 VEVVDVNDNAPQLTLTSLSLPIPEDAQPGTVITLISVFDRDFGVNGQVTCSLTPRVPF-- 395
           VEV D+NDN P   +    + I E   P +V  L    D D G N  +T  L+    F  
Sbjct: 121 VEVRDINDNPPLFPVEEQRVLIYESRLPDSVFPLEGASDADVGSNSILTYKLSSSEYFGL 180

Query: 396 --KLVSTFKNYYSLVLDSALDRESVSAYELVVTARDGGSPSLWATASVSVEVADVNDNAP 453
             K+ S       L+L  +LDRE   A+ L +TA DGG P L  T  + V V DVNDNAP
Sbjct: 181 DVKINSDDNKQIGLLLKKSLDREEAPAHNLFLTATDGGKPELTGTVQLLVTVLDVNDNAP 240

Query: 454 AFAQPEYTVFVKENNPPGCHIFTVSAGDADAQKNALVSYSLVELRVGERALSSYVSVHAE 513
            F Q EY V + EN   G  +  ++A D D   N  +SYS   L      +  + S+   
Sbjct: 241 TFEQSEYEVRIFENADNGTTVIRLNASDRDEGANGAISYSFNSLVAA--MVIDHFSIDRN 298

Query: 514 SGKVYALQPLDHEELELLQFQVSARDAGVPPLGSNVTLQVFVLDENDNAPALLAPRVGGT 573
           +G++     LD E+  L +  + A D G PP+  + T+ V +LD+NDN P +    +   
Sbjct: 299 TGEIVIRGNLDFEQENLYKILIDATDKGHPPMAGHCTVLVRILDKNDNVPEI---ALTSL 355

Query: 574 GGAVRELVPRSVGAGHVVAKVRAVDADSGYNAWLSYELQPVAAGASIPFR-VGLYTGEIS 632
              VRE        G V+A +   D DSG N  ++  L P      +PF+ V  +    S
Sbjct: 356 SLPVRE----DAQFGTVIALISVNDLDSGANGQVNCSLTP-----HVPFKLVSTFKNYYS 406

Query: 633 TT--RALDETDAPRHRLLVLVKDHGEPSLTATATVLVSLVESGQAPKASSRASLGIAGPE 690
                ALD      + L+V  +D G PSL ATA++ V + +      A ++    +   E
Sbjct: 407 LVLDSALDRESVSAYELVVTARDGGSPSLWATASLSVEVADMNDNAPAFAQPEYTVFVKE 466

Query: 691 TELVDVNVYLIIA 703
                 +++ + A
Sbjct: 467 NNPPGCHIFTVSA 479



 Score =  155 bits (391), Expect = 2e-37
 Identities = 119/386 (30%), Positives = 181/386 (46%), Gaps = 16/386 (4%)

Query: 230 ITVLDNNDNAPVFDRTLYTVKLPENVSIGTLVIHPNASDLDEGLNGDIIYSFSSDVSPDI 289
           + V D NDN P+F      V + E+    ++     ASD D G N  + Y  SS     +
Sbjct: 121 VEVRDINDNPPLFPVEEQRVLIYESRLPDSVFPLEGASDADVGSNSILTYKLSSSEYFGL 180

Query: 290 KSKFHMDPLSG-AITVIGHMDFEESRAHKIPVEAVDKGFPPLAGHCTVLVEVVDVNDNAP 348
             K + D      + +   +D EE+ AH + + A D G P L G   +LV V+DVNDNAP
Sbjct: 181 DVKINSDDNKQIGLLLKKSLDREEAPAHNLFLTATDGGKPELTGTVQLLVTVLDVNDNAP 240

Query: 349 QLTLTSLSLPIPEDAQPGTVITLISVFDRDFGVNGQVTCSLTPRVPFKLVSTF---KNYY 405
               +   + I E+A  GT +  ++  DRD G NG ++ S    V   ++  F   +N  
Sbjct: 241 TFEQSEYEVRIFENADNGTTVIRLNASDRDEGANGAISYSFNSLVAAMVIDHFSIDRNTG 300

Query: 406 SLVLDSALDRESVSAYELVVTARDGGSPSLWATASVSVEVADVNDNAPAFAQPEYTVFVK 465
            +V+   LD E  + Y++++ A D G P +    +V V + D NDN P  A    ++ V+
Sbjct: 301 EIVIRGNLDFEQENLYKILIDATDKGHPPMAGHCTVLVRILDKNDNVPEIALTSLSLPVR 360

Query: 466 ENNPPGCHIFTVSAGDADAQKNALVSYSLVELRVGERALSSYVSVHAESGKVYALQPLDH 525
           E+   G  I  +S  D D+  N  V+ SL    V  + +S++ + ++    +     LD 
Sbjct: 361 EDAQFGTVIALISVNDLDSGANGQVNCSLTP-HVPFKLVSTFKNYYS----LVLDSALDR 415

Query: 526 EELELLQFQVSARDAGVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTGGAVRELVPRSV 585
           E +   +  V+ARD G P L +  +L V V D NDNAPA   P            V  + 
Sbjct: 416 ESVSAYELVVTARDGGSPSLWATASLSVEVADMNDNAPAFAQPEY-------TVFVKENN 468

Query: 586 GAGHVVAKVRAVDADSGYNAWLSYEL 611
             G  +  V A DAD+  NA +SY L
Sbjct: 469 PPGCHIFTVSARDADAQENALVSYSL 494


>gi|14589916 protocadherin 10 isoform 1 precursor [Homo sapiens]
          Length = 1040

 Score =  608 bits (1568), Expect = e-174
 Identities = 339/802 (42%), Positives = 488/802 (60%), Gaps = 38/802 (4%)

Query: 14  LLLFIIILAAWEAGRGQLHYSVPEEAKHGNFVGRIAQDLGLELAELVPRLFRAVCKFRGD 73
           +LL   +L   E    QLHY+V EE +HG FVG IA+DLGL++ +L  R F+ V   R  
Sbjct: 3   VLLLFALLWMVEGVFSQLHYTVQEEQEHGTFVGNIAEDLGLDITKLSARGFQTVPNSRTP 62

Query: 74  LLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVERPLQVFHVDVEVKDINDNPPVF 133
            L++NL+ G+L+VN +IDRE++C +S  C +HLEV +E PL++F V++EV DINDNPP F
Sbjct: 63  YLDLNLETGVLYVNEKIDREQICKQSPSCVLHLEVFLENPLELFQVEIEVLDINDNPPSF 122

Query: 134 PATQRNLFIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYFFLDVPTSNQQVKPLG 193
           P     + I+ES    +RFPLE A D D+G N+L  Y ++PN YF LDV T     +   
Sbjct: 123 PEPDLTVEISESATPGTRFPLESAFDPDVGTNSLRDYEITPNSYFSLDVQTQGDGNRFAE 182

Query: 194 LVLRKLLDREETPELHLLLTATDGG-------------------KPELTGTVQLLITVLD 234
           LVL K LDRE+      +LTA DGG                   + + TGT  L I VLD
Sbjct: 183 LVLEKPLDREQQAVHRYVLTAVDGGGGGGVGEGGGGGGGAGLPPQQQRTGTALLTIRVLD 242

Query: 235 NNDNAPVFDRTLYTVKLPENVSIGTLVIHPNASDLDEGLNGDIIYSFSSDVSPDIKSKFH 294
           +NDN P FD+ +YTV LPEN   GTLVI  NA+D DEG NG+++YSFSS +SP  +  F 
Sbjct: 243 SNDNVPAFDQPVYTVSLPENSPPGTLVIQLNATDPDEGQNGEVVYSFSSHISPRARELFG 302

Query: 295 MDPLSGAITVIGHMDFEESRAHKIPVEAVDKGFPPLAGHCTVLVEVVDVNDNAPQLTLTS 354
           + P +G + V G +D+EES  +++ V+A D G   +  HC VLV V+D NDNAP+++ ++
Sbjct: 303 LSPRTGRLEVSGELDYEESPVYQVYVQAKDLGPNAVPAHCKVLVRVLDANDNAPEISFST 362

Query: 355 LSLPIPEDAQPGTVITLISVFDRDFGVNGQVTCSLTPRVPFKLVSTFKNYYSLVLDSALD 414
           +   + E A PGTV+ L SV DRD   NGQV C L   VPF+L S+FKNYY++V ++ LD
Sbjct: 363 VKEAVSEGAAPGTVVALFSVTDRDSEENGQVQCELLGDVPFRLKSSFKNYYTIVTEAPLD 422

Query: 415 RESVSAYELVVTARDGGSPSLWATASVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHI 474
           RE+  +Y L V ARD G P+L  + S+ V+V+DVNDNAP F+QP Y V+V ENN PG +I
Sbjct: 423 REAGDSYTLTVVARDRGEPALSTSKSIQVQVSDVNDNAPRFSQPVYDVYVTENNVPGAYI 482

Query: 475 FTVSAGDADAQKNALVSYSLVELRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQ 534
           + VSA D D   NA ++YS++E ++   ++ +YVS+++E+G +YAL+  D+E+L+   FQ
Sbjct: 483 YAVSATDRDEGANAQLAYSILECQIQGMSVFTYVSINSENGYLYALRSFDYEQLKDFSFQ 542

Query: 535 VSARDAGVP-PLGSNVTLQVFVLDENDNAPALLAPRVGGTGGAVRELVPRSVGAGHVVAK 593
           V ARDAG P  L  N T+ + ++D+NDNAPA++AP  G  G   RE++PRS   G+++ +
Sbjct: 543 VEARDAGSPQALAGNATVNILIVDQNDNAPAIVAPLPGRNGTPAREVLPRSAEPGYLLTR 602

Query: 594 VRAVDADSGYNAWLSYELQPVAAGASIPFRVGLYTGEISTTRALDETDAPR--HRLLVLV 651
           V AVDAD G NA L+Y +  V       FR+   TGE+ T R +     P+  + L++ V
Sbjct: 603 VAAVDADDGENARLTYSI--VRGNEMNLFRMDWRTGELRTARRVPAKRDPQRPYELVIEV 660

Query: 652 KDHGEPSLTATATVLVSLVESGQAPKASSRASLG----------IAGPETELVDVNVYLI 701
           +DHG+P L++TAT++V LV+    P+    +  G            G ET L D+ + LI
Sbjct: 661 RDHGQPPLSSTATLVVQLVDGAVEPQGGGGSGGGGSGEHQRPSRSGGGETSL-DLTLILI 719

Query: 702 IAICAVSSLLVLTLLLYTALRCSAPSSEGACS-LVKPTLVCSSAVGSWSFSQQRRQRVCS 760
           IA+ +VS + +L +++  A+RC         + L     +C    G    +   RQ    
Sbjct: 720 IALGSVSFIFLLAMIV-LAVRCQKEKKLNIYTCLASDCCLCCCCCGGGGSTCCGRQARAR 778

Query: 761 GEGPPKTDLMAF-SPSLPQGPS 781
            +   K+D+M   S ++P  P+
Sbjct: 779 KKKLSKSDIMLVQSSNVPSNPA 800


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.135    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,710,282
Number of Sequences: 37866
Number of extensions: 1478078
Number of successful extensions: 9855
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 2818
Number of HSP's gapped (non-prelim): 726
length of query: 789
length of database: 18,247,518
effective HSP length: 110
effective length of query: 679
effective length of database: 14,082,258
effective search space: 9561853182
effective search space used: 9561853182
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.