PCDHA1 3821

Name: PCDHA1	Sequence: fasta or formatted (807aa)		NCBI GI: 14165400
Description: protocadherin alpha 1 isoform 2 precursor		Referenced in: Cadherins and Related Proteins
Other entries for this name: alt prot [686aa] protocadherin alpha 1 isoform 3 precursor alt prot [950aa] protocadherin alpha 1 isoform 1 precursor
Composition: Amino acid Percentage Count Longest homopolymer A alanine 9.0 73 2 C cysteine 1.1 9 1 D aspartate 6.1 49 1 E glutamate 7.2 58 2 F phenylalanine 3.0 24 1 G glycine 6.2 50 2 H histidine 1.7 14 1 I isoleucine 3.3 27 2 K lysine 3.0 24 1 L leucine 13.1 106 4 M methionine 0.5 4 1 N asparagine 4.1 33 2 P proline 5.5 44 2 Q glutamine 2.9 23 2 R arginine 5.3 43 2 S serine 8.9 72 3 T threonine 4.8 39 2 V valine 10.5 85 2 W tryptophan 1.0 8 1 Y tyrosine 2.7 22 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 protocadherin alpha 1 isoform 2 precursor PCDHA1 0.987 protocadherin alpha 1 isoform 1 precursor PCDHA2 0.777 protocadherin alpha 2 isoform 2 precursor PCDHA2 0.777 protocadherin alpha 2 isoform 1 precursor PCDHA5 0.773 protocadherin alpha 5 isoform 1 precursor PCDHA3 0.772 protocadherin alpha 3 isoform 2 precursor PCDHA5 0.771 protocadherin alpha 5 isoform 2 precursor PCDHA3 0.769 protocadherin alpha 3 isoform 1 precursor PCDHA8 0.769 protocadherin alpha 8 isoform 2 precursor PCDHA8 0.766 protocadherin alpha 8 isoform 1 precursor PCDHA4 0.764 protocadherin alpha 4 isoform 1 precursor PCDHA4 0.763 protocadherin alpha 4 isoform 2 precursor PCDHA6 0.760 protocadherin alpha 6 isoform 2 precursor PCDHA6 0.759 protocadherin alpha 6 isoform 1 precursor PCDHA13 0.757 protocadherin alpha 13 isoform 2 precursor PCDHA9 0.757 protocadherin alpha 9 isoform 2 precursor PCDHA7 0.757 protocadherin alpha 7 isoform 1 precursor PCDHA13 0.756 protocadherin alpha 13 isoform 1 precursor PCDHA9 0.756 protocadherin alpha 9 isoform 1 precursor PCDHA11 0.755 protocadherin alpha 11 isoform 2 precursor PCDHA7 0.754 protocadherin alpha 7 isoform 2 precursor PCDHA11 0.753 protocadherin alpha 11 isoform 1 precursor PCDHA12 0.733 protocadherin alpha 12 isoform 1 precursor PCDHA12 0.731 protocadherin alpha 12 isoform 2 precursor PCDHA10 0.730 protocadherin alpha 10 isoform 2 precursor PCDHA10 0.730 protocadherin alpha 10 isoform 1 precursor PCDHA1 0.659 protocadherin alpha 1 isoform 3 precursor PCDHA6 0.486 protocadherin alpha 6 isoform 3 precursor PCDHA10 0.483 protocadherin alpha 10 isoform 3 precursor PCDHGC3 0.365 protocadherin gamma subfamily C, 3 isoform 2 precurs... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.