PCDHA1 37316

Name: PCDHA1	Sequence: fasta or formatted (950aa)		NCBI GI: 9256582
Description: protocadherin alpha 1 isoform 1 precursor		Referenced in: Cadherins and Related Proteins
Other entries for this name: alt prot [807aa] protocadherin alpha 1 isoform 2 precursor alt prot [686aa] protocadherin alpha 1 isoform 3 precursor
Composition: Amino acid Percentage Count Longest homopolymer A alanine 8.5 81 2 C cysteine 0.9 9 1 D aspartate 5.9 56 1 E glutamate 7.2 68 2 F phenylalanine 2.7 26 1 G glycine 6.9 66 2 H histidine 1.7 16 1 I isoleucine 3.7 35 2 K lysine 4.4 42 8 L leucine 11.5 109 4 M methionine 0.5 5 1 N asparagine 4.3 41 2 P proline 6.3 60 2 Q glutamine 3.3 31 2 R arginine 5.1 48 2 S serine 9.2 87 3 T threonine 4.9 47 2 V valine 9.4 89 2 W tryptophan 1.1 10 1 Y tyrosine 2.5 24 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 protocadherin alpha 1 isoform 1 precursor PCDHA1 0.830 protocadherin alpha 1 isoform 2 precursor PCDHA2 0.822 protocadherin alpha 2 isoform 1 precursor PCDHA3 0.818 protocadherin alpha 3 isoform 1 precursor PCDHA5 0.814 protocadherin alpha 5 isoform 1 precursor PCDHA8 0.813 protocadherin alpha 8 isoform 1 precursor PCDHA4 0.809 protocadherin alpha 4 isoform 1 precursor PCDHA6 0.808 protocadherin alpha 6 isoform 1 precursor PCDHA9 0.806 protocadherin alpha 9 isoform 1 precursor PCDHA13 0.805 protocadherin alpha 13 isoform 1 precursor PCDHA11 0.803 protocadherin alpha 11 isoform 1 precursor PCDHA7 0.800 protocadherin alpha 7 isoform 1 precursor PCDHA10 0.782 protocadherin alpha 10 isoform 1 precursor PCDHA12 0.781 protocadherin alpha 12 isoform 1 precursor PCDHA2 0.653 protocadherin alpha 2 isoform 2 precursor PCDHA5 0.649 protocadherin alpha 5 isoform 2 precursor PCDHA3 0.647 protocadherin alpha 3 isoform 2 precursor PCDHA8 0.644 protocadherin alpha 8 isoform 2 precursor PCDHA4 0.642 protocadherin alpha 4 isoform 2 precursor PCDHA6 0.638 protocadherin alpha 6 isoform 2 precursor PCDHA13 0.636 protocadherin alpha 13 isoform 2 precursor PCDHA9 0.636 protocadherin alpha 9 isoform 2 precursor PCDHA7 0.634 protocadherin alpha 7 isoform 2 precursor PCDHA11 0.633 protocadherin alpha 11 isoform 2 precursor PCDHA12 0.615 protocadherin alpha 12 isoform 2 precursor PCDHA10 0.613 protocadherin alpha 10 isoform 2 precursor PCDHA1 0.554 protocadherin alpha 1 isoform 3 precursor PCDHAC2 0.461 protocadherin alpha subfamily C, 2 isoform 1 precurso... PCDHA6 0.409 protocadherin alpha 6 isoform 3 precursor PCDHA10 0.406 protocadherin alpha 10 isoform 3 precursor Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.