PCDHA1 3822

Name: PCDHA1	Sequence: fasta or formatted (686aa)		NCBI GI: 14165402
Description: protocadherin alpha 1 isoform 3 precursor		Referenced in: Cadherins and Related Proteins
Other entries for this name: alt prot [807aa] protocadherin alpha 1 isoform 2 precursor alt prot [950aa] protocadherin alpha 1 isoform 1 precursor
Composition: Amino acid Percentage Count Longest homopolymer A alanine 7.3 50 2 C cysteine 0.7 5 1 D aspartate 6.6 45 1 E glutamate 8.0 55 2 F phenylalanine 3.4 23 1 G glycine 6.4 44 2 H histidine 2.0 14 1 I isoleucine 4.2 29 2 K lysine 5.4 37 8 L leucine 10.9 75 4 M methionine 0.6 4 1 N asparagine 4.5 31 2 P proline 6.0 41 2 Q glutamine 3.5 24 2 R arginine 4.8 33 2 S serine 8.7 60 3 T threonine 4.8 33 2 V valine 8.5 58 2 W tryptophan 1.2 8 1 Y tyrosine 2.5 17 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 protocadherin alpha 1 isoform 3 precursor PCDHA6 0.799 protocadherin alpha 6 isoform 3 precursor PCDHA10 0.795 protocadherin alpha 10 isoform 3 precursor PCDHA1 0.765 protocadherin alpha 1 isoform 2 precursor PCDHA1 0.765 protocadherin alpha 1 isoform 1 precursor PCDHA2 0.592 protocadherin alpha 2 isoform 2 precursor PCDHA2 0.592 protocadherin alpha 2 isoform 1 precursor PCDHA5 0.590 protocadherin alpha 5 isoform 1 precursor PCDHA5 0.590 protocadherin alpha 5 isoform 2 precursor PCDHA8 0.576 protocadherin alpha 8 isoform 2 precursor PCDHA8 0.576 protocadherin alpha 8 isoform 1 precursor PCDHA3 0.575 protocadherin alpha 3 isoform 1 precursor PCDHA3 0.575 protocadherin alpha 3 isoform 2 precursor PCDHA4 0.574 protocadherin alpha 4 isoform 2 precursor PCDHA4 0.574 protocadherin alpha 4 isoform 1 precursor PCDHA13 0.573 protocadherin alpha 13 isoform 2 precursor PCDHA13 0.573 protocadherin alpha 13 isoform 1 precursor PCDHA9 0.572 protocadherin alpha 9 isoform 2 precursor PCDHA9 0.572 protocadherin alpha 9 isoform 1 precursor PCDHA11 0.570 protocadherin alpha 11 isoform 2 precursor PCDHA11 0.570 protocadherin alpha 11 isoform 1 precursor PCDHA7 0.569 protocadherin alpha 7 isoform 2 precursor PCDHA7 0.569 protocadherin alpha 7 isoform 1 precursor PCDHA6 0.564 protocadherin alpha 6 isoform 2 precursor PCDHA6 0.564 protocadherin alpha 6 isoform 1 precursor PCDHA10 0.561 protocadherin alpha 10 isoform 2 precursor PCDHA10 0.561 protocadherin alpha 10 isoform 1 precursor PCDHA12 0.548 protocadherin alpha 12 isoform 2 precursor PCDHA12 0.548 protocadherin alpha 12 isoform 1 precursor PCDHGC3 0.331 protocadherin gamma subfamily C, 3 isoform 2 precurs... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.