Guide to the Human Genome
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Name: PCDHA7 Sequence: fasta or formatted (937aa) NCBI GI: 9256594
Description:

protocadherin alpha 7 isoform 1 precursor

Referenced in:

Cadherins and Related Proteins

Other entries for this name:
alt prot [789aa] protocadherin alpha 7 isoform 2 precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.0         75           2
 C cysteine            1.3         12           1
 D aspartate           5.9         55           1
 E glutamate           6.4         60           2
 F phenylalanine       3.4         32           2
 G glycine             7.5         70           2
 H histidine           2.0         19           1
 I isoleucine          4.1         38           3
 K lysine              4.2         39           8
 L leucine            10.7        100           3
 M methionine          0.5          5           1
 N asparagine          4.3         40           2
 P proline             7.5         70           2
 Q glutamine           3.3         31           2
 R arginine            4.6         43           2
 S serine              8.9         83           2
 T threonine           5.2         49           2
 V valine              9.5         89           2
 W tryptophan          0.7          7           1
 Y tyrosine            2.1         20           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   protocadherin alpha 7 isoform 1 precursor 
PCDHA9                0.892   protocadherin alpha 9 isoform 1 precursor 
PCDHA4                0.848   protocadherin alpha 4 isoform 1 precursor 
PCDHA7                0.829   protocadherin alpha 7 isoform 2 precursor 
PCDHA3                0.822   protocadherin alpha 3 isoform 1 precursor 
PCDHA5                0.810   protocadherin alpha 5 isoform 1 precursor 
PCDHA13               0.806   protocadherin alpha 13 isoform 1 precursor 
PCDHA6                0.805   protocadherin alpha 6 isoform 1 precursor 
PCDHA1                0.805   protocadherin alpha 1 isoform 1 precursor 
PCDHA8                0.801   protocadherin alpha 8 isoform 1 precursor 
PCDHA2                0.799   protocadherin alpha 2 isoform 1 precursor 
PCDHA11               0.796   protocadherin alpha 11 isoform 1 precursor 
PCDHA10               0.793   protocadherin alpha 10 isoform 1 precursor 
PCDHA12               0.789   protocadherin alpha 12 isoform 1 precursor 
PCDHA9                0.727   protocadherin alpha 9 isoform 2 precursor 
PCDHA4                0.681   protocadherin alpha 4 isoform 2 precursor 
PCDHA3                0.658   protocadherin alpha 3 isoform 2 precursor 
PCDHA13               0.641   protocadherin alpha 13 isoform 2 precursor 
PCDHA1                0.640   protocadherin alpha 1 isoform 2 precursor 
PCDHA6                0.640   protocadherin alpha 6 isoform 2 precursor 
PCDHA5                0.639   protocadherin alpha 5 isoform 2 precursor 
PCDHA8                0.635   protocadherin alpha 8 isoform 2 precursor 
PCDHA2                0.633   protocadherin alpha 2 isoform 2 precursor 
PCDHA11               0.631   protocadherin alpha 11 isoform 2 precursor 
PCDHA10               0.628   protocadherin alpha 10 isoform 2 precursor 
PCDHA12               0.623   protocadherin alpha 12 isoform 2 precursor 
PCDHAC2               0.453   protocadherin alpha subfamily C, 2 isoform 1 precurso...
PCDHA1                0.414   protocadherin alpha 1 isoform 3 precursor 
PCDHA10               0.410   protocadherin alpha 10 isoform 3 precursor 
PCDHA6                0.408   protocadherin alpha 6 isoform 3 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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