Guide to the Human Genome
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Name: PCDHA12 Sequence: fasta or formatted (792aa) NCBI GI: 14165392
Description:

protocadherin alpha 12 isoform 2 precursor

Referenced in:

Cadherins and Related Proteins

Other entries for this name:
alt prot [941aa] protocadherin alpha 12 isoform 1 precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.6         68           2
 C cysteine            1.4         11           1
 D aspartate           5.9         47           1
 E glutamate           6.7         53           2
 F phenylalanine       2.3         18           1
 G glycine             6.1         48           2
 H histidine           2.1         17           1
 I isoleucine          4.4         35           2
 K lysine              3.5         28           2
 L leucine            11.7         93           4
 M methionine          1.0          8           1
 N asparagine          4.4         35           2
 P proline             6.1         48           2
 Q glutamine           3.4         27           2
 R arginine            4.4         35           2
 S serine              9.3         74           2
 T threonine           3.8         30           2
 V valine             11.4         90           2
 W tryptophan          0.6          5           1
 Y tyrosine            2.8         22           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   protocadherin alpha 12 isoform 2 precursor 
PCDHA12               0.996   protocadherin alpha 12 isoform 1 precursor 
PCDHA10               0.772   protocadherin alpha 10 isoform 2 precursor 
PCDHA10               0.772   protocadherin alpha 10 isoform 1 precursor 
PCDHA11               0.767   protocadherin alpha 11 isoform 2 precursor 
PCDHA11               0.766   protocadherin alpha 11 isoform 1 precursor 
PCDHA8                0.765   protocadherin alpha 8 isoform 2 precursor 
PCDHA8                0.765   protocadherin alpha 8 isoform 1 precursor 
PCDHA13               0.763   protocadherin alpha 13 isoform 2 precursor 
PCDHA13               0.763   protocadherin alpha 13 isoform 1 precursor 
PCDHA6                0.759   protocadherin alpha 6 isoform 2 precursor 
PCDHA6                0.759   protocadherin alpha 6 isoform 1 precursor 
PCDHA4                0.757   protocadherin alpha 4 isoform 2 precursor 
PCDHA4                0.757   protocadherin alpha 4 isoform 1 precursor 
PCDHA2                0.755   protocadherin alpha 2 isoform 2 precursor 
PCDHA2                0.755   protocadherin alpha 2 isoform 1 precursor 
PCDHA3                0.750   protocadherin alpha 3 isoform 1 precursor 
PCDHA3                0.750   protocadherin alpha 3 isoform 2 precursor 
PCDHA7                0.750   protocadherin alpha 7 isoform 1 precursor 
PCDHA7                0.749   protocadherin alpha 7 isoform 2 precursor 
PCDHA1                0.745   protocadherin alpha 1 isoform 2 precursor 
PCDHA1                0.745   protocadherin alpha 1 isoform 1 precursor 
PCDHA5                0.742   protocadherin alpha 5 isoform 1 precursor 
PCDHA5                0.742   protocadherin alpha 5 isoform 2 precursor 
PCDHA9                0.738   protocadherin alpha 9 isoform 2 precursor 
PCDHA9                0.738   protocadherin alpha 9 isoform 1 precursor 
PCDHA10               0.512   protocadherin alpha 10 isoform 3 precursor 
PCDHA6                0.489   protocadherin alpha 6 isoform 3 precursor 
PCDHA1                0.481   protocadherin alpha 1 isoform 3 precursor 
PCDHGA12              0.363   protocadherin gamma subfamily A, 12 isoform 1 precurs...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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