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Search of human proteins with 94536809
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|94536809 U2 small nuclear RNA auxiliary factor 1-like 4
isoform 1 [Homo sapiens]
(181 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|94536809 U2 small nuclear RNA auxiliary factor 1-like 4 isofo... 397 e-111
gi|68800128 U2 small nuclear RNA auxillary factor 1 isoform b [H... 275 1e-74
gi|5803207 U2 small nuclear RNA auxillary factor 1 isoform a [Ho... 275 1e-74
gi|89038927 PREDICTED: similar to U2 small nuclear RNA auxillary... 234 2e-62
gi|89038281 PREDICTED: similar to U2 small nuclear RNA auxillary... 234 2e-62
gi|94536807 U2 small nuclear RNA auxiliary factor 1-like 4 isofo... 222 1e-58
gi|68800138 U2 small nuclear RNA auxillary factor 1 isoform c [H... 205 2e-53
gi|4827046 U2 small nuclear RNA auxiliary factor 1-like 2 [Homo ... 106 1e-23
gi|5729939 cleavage and polyadenylation specific factor 4, 30kDa... 39 0.002
gi|14249452 zinc finger CCCH-type containing 10 [Homo sapiens] 37 0.007
gi|125987603 cleavage and polyadenylation specific factor 4, 30k... 36 0.021
gi|253970456 HIV-1 Tat specific factor 1 [Homo sapiens] 35 0.035
gi|21361437 HIV-1 Tat specific factor 1 [Homo sapiens] 35 0.035
gi|118150660 erythropoietin 4 immediate early response [Homo sap... 35 0.046
gi|223468622 makorin ring finger protein 1 isoform 2 [Homo sapiens] 34 0.078
gi|223468620 makorin ring finger protein 1 isoform 1 [Homo sapiens] 34 0.078
gi|13899354 RNA binding motif protein 4B [Homo sapiens] 33 0.13
gi|93277122 RNA binding motif protein 4 [Homo sapiens] 33 0.17
gi|224549005 RNA binding motif protein 17 [Homo sapiens] 32 0.23
gi|14249678 RNA binding motif protein 17 [Homo sapiens] 32 0.23
gi|54792138 helicase with zinc finger domain [Homo sapiens] 32 0.39
gi|209862867 poly-U binding splicing factor 60KDa isoform c [Hom... 31 0.51
gi|17298690 poly-U binding splicing factor 60KDa isoform b [Homo... 31 0.51
gi|17978512 poly-U binding splicing factor 60KDa isoform a [Homo... 31 0.51
gi|46367787 poly(A) binding protein, cytoplasmic 1 [Homo sapiens] 31 0.51
gi|45238849 poly(A) binding protein, cytoplasmic 3 [Homo sapiens] 31 0.51
gi|155722994 zinc finger CCCH-type containing 3 [Homo sapiens] 31 0.66
gi|5902158 ring finger protein 113A [Homo sapiens] 30 0.87
gi|32880199 makorin ring finger protein 2 [Homo sapiens] 30 0.87
gi|122937239 zinc finger CCCH-type domain containing 5 [Homo sap... 30 0.87
>gi|94536809 U2 small nuclear RNA auxiliary factor 1-like 4 isoform
1 [Homo sapiens]
Length = 181
Score = 397 bits (1020), Expect = e-111
Identities = 181/181 (100%), Positives = 181/181 (100%)
Query: 1 MAEYLASIFGTEKDKVNCSFYFKIGVCRHGDRCSRLHNKPTFSQEVFTELQEKYGEIEEM 60
MAEYLASIFGTEKDKVNCSFYFKIGVCRHGDRCSRLHNKPTFSQEVFTELQEKYGEIEEM
Sbjct: 1 MAEYLASIFGTEKDKVNCSFYFKIGVCRHGDRCSRLHNKPTFSQEVFTELQEKYGEIEEM 60
Query: 61 NVCDNLGDHLVGNVYVKFRREEDGERAVAELSNRWFNGQAVHGELSPVTDFRESCCRQYE 120
NVCDNLGDHLVGNVYVKFRREEDGERAVAELSNRWFNGQAVHGELSPVTDFRESCCRQYE
Sbjct: 61 NVCDNLGDHLVGNVYVKFRREEDGERAVAELSNRWFNGQAVHGELSPVTDFRESCCRQYE 120
Query: 121 MGECTRGGFCNFMHLRPISQNLQRQLYGRGPRRRSPPRFHTGHHPRERNHRCSPDHWHGR 180
MGECTRGGFCNFMHLRPISQNLQRQLYGRGPRRRSPPRFHTGHHPRERNHRCSPDHWHGR
Sbjct: 121 MGECTRGGFCNFMHLRPISQNLQRQLYGRGPRRRSPPRFHTGHHPRERNHRCSPDHWHGR 180
Query: 181 F 181
F
Sbjct: 181 F 181
>gi|68800128 U2 small nuclear RNA auxillary factor 1 isoform b [Homo
sapiens]
Length = 240
Score = 275 bits (704), Expect = 1e-74
Identities = 137/210 (65%), Positives = 152/210 (72%), Gaps = 44/210 (20%)
Query: 1 MAEYLASIFGTEKDKVNCSFYFKIGVCRHGDRCSRLHNKPTFSQ---------------- 44
MAEYLASIFGTEKDKVNCSFYFKIG CRHGDRCSRLHNKPTFSQ
Sbjct: 1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTILIQNIYRNPQNSAQ 60
Query: 45 -----------------------EVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRRE 81
EVFTE++EKYGE+EEMNVCDNLGDHLVGNVYVKFRRE
Sbjct: 61 TADGSHCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRRE 120
Query: 82 EDGERAVAELSNRWFNGQAVHGELSPVTDFRESCCRQYEMGECTRGGFCNFMHLRPISQN 141
ED E+AV +L+NRWFNGQ +H ELSPVTDFRE+CCRQYEMGECTRGGFCNFMHL+PIS+
Sbjct: 121 EDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRE 180
Query: 142 LQRQLYGRGPRRRSPPRFHTGHHPRERNHR 171
L+R+LYGR RR+ + + RER R
Sbjct: 181 LRRELYGR--RRK---KHRSRSRSRERRSR 205
>gi|5803207 U2 small nuclear RNA auxillary factor 1 isoform a [Homo
sapiens]
Length = 240
Score = 275 bits (704), Expect = 1e-74
Identities = 137/210 (65%), Positives = 152/210 (72%), Gaps = 44/210 (20%)
Query: 1 MAEYLASIFGTEKDKVNCSFYFKIGVCRHGDRCSRLHNKPTFSQ---------------- 44
MAEYLASIFGTEKDKVNCSFYFKIG CRHGDRCSRLHNKPTFSQ
Sbjct: 1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQ 60
Query: 45 -----------------------EVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRRE 81
EVFTE++EKYGE+EEMNVCDNLGDHLVGNVYVKFRRE
Sbjct: 61 SADGLRCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRRE 120
Query: 82 EDGERAVAELSNRWFNGQAVHGELSPVTDFRESCCRQYEMGECTRGGFCNFMHLRPISQN 141
ED E+AV +L+NRWFNGQ +H ELSPVTDFRE+CCRQYEMGECTRGGFCNFMHL+PIS+
Sbjct: 121 EDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRE 180
Query: 142 LQRQLYGRGPRRRSPPRFHTGHHPRERNHR 171
L+R+LYGR RR+ + + RER R
Sbjct: 181 LRRELYGR--RRK---KHRSRSRSRERRSR 205
>gi|89038927 PREDICTED: similar to U2 small nuclear RNA auxillary
factor 1 [Homo sapiens]
Length = 243
Score = 234 bits (598), Expect = 2e-62
Identities = 129/219 (58%), Positives = 142/219 (64%), Gaps = 49/219 (22%)
Query: 1 MAEYLASIFGTEKDKVNCSFYFKIGVCRHGDRCSRLHNKPTFSQ---------------- 44
MAE ASIFGTEK VNCSF FKIG C HGDRCS LH+KPTFSQ
Sbjct: 1 MAECPASIFGTEK--VNCSFDFKIGACLHGDRCSWLHHKPTFSQTIALLNIYCNPQNASQ 58
Query: 45 -----------------------EVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRRE 81
EVF EL EKYGE+EEMNVCDNLGDHLVGNVY K RE
Sbjct: 59 SADGLRCALSDVEVQEHYDEFFEEVFIELGEKYGEVEEMNVCDNLGDHLVGNVYFKLPRE 118
Query: 82 EDGERAVAELSNRWFNGQAVHGELSPVTDFRESCCRQYEMGECTRGGFCNFMHLRPISQN 141
ED E+AV +L+NRWFNGQ +H ELSPVTDFR +CCRQYEMGECTRGGFCNFMHL+PIS+
Sbjct: 119 EDAEKAVIDLNNRWFNGQPIHAELSPVTDFRGACCRQYEMGECTRGGFCNFMHLKPISRE 178
Query: 142 LQRQLYG-RGPRRRSPPRFHTGHHPRERNHRCSPDHWHG 179
L+R+L G R + RS R RER+ R S D HG
Sbjct: 179 LRRELCGQRRKKHRSRSR------SRERHSR-SGDRGHG 210
>gi|89038281 PREDICTED: similar to U2 small nuclear RNA auxillary
factor 1 [Homo sapiens]
Length = 243
Score = 234 bits (598), Expect = 2e-62
Identities = 129/219 (58%), Positives = 142/219 (64%), Gaps = 49/219 (22%)
Query: 1 MAEYLASIFGTEKDKVNCSFYFKIGVCRHGDRCSRLHNKPTFSQ---------------- 44
MAE ASIFGTEK VNCSF FKIG C HGDRCS LH+KPTFSQ
Sbjct: 1 MAECPASIFGTEK--VNCSFDFKIGACLHGDRCSWLHHKPTFSQTIALLNIYCNPQNASQ 58
Query: 45 -----------------------EVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRRE 81
EVF EL EKYGE+EEMNVCDNLGDHLVGNVY K RE
Sbjct: 59 SADGLRCALSDVEVQEHSDEFFEEVFIELGEKYGEVEEMNVCDNLGDHLVGNVYFKLPRE 118
Query: 82 EDGERAVAELSNRWFNGQAVHGELSPVTDFRESCCRQYEMGECTRGGFCNFMHLRPISQN 141
ED E+AV +L+NRWFNGQ +H ELSPVTDFR +CCRQYEMGECTRGGFCNFMHL+PIS+
Sbjct: 119 EDAEKAVIDLNNRWFNGQPIHAELSPVTDFRGACCRQYEMGECTRGGFCNFMHLKPISRE 178
Query: 142 LQRQLYG-RGPRRRSPPRFHTGHHPRERNHRCSPDHWHG 179
L+R+L G R + RS R RER+ R S D HG
Sbjct: 179 LRRELCGQRRKKHRSRSR------SRERHSR-SGDRGHG 210
>gi|94536807 U2 small nuclear RNA auxiliary factor 1-like 4 isoform
2 [Homo sapiens]
Length = 202
Score = 222 bits (566), Expect = 1e-58
Identities = 105/116 (90%), Positives = 106/116 (91%)
Query: 1 MAEYLASIFGTEKDKVNCSFYFKIGVCRHGDRCSRLHNKPTFSQEVFTELQEKYGEIEEM 60
MAEYLASIFGTEKDKVNCSFYFKIGVCRHGDRCSRLHNKPTFSQEVFTELQEKYGEIEEM
Sbjct: 1 MAEYLASIFGTEKDKVNCSFYFKIGVCRHGDRCSRLHNKPTFSQEVFTELQEKYGEIEEM 60
Query: 61 NVCDNLGDHLVGNVYVKFRREEDGERAVAELSNRWFNGQAVHGELSPVTDFRESCC 116
NVCDNLGDHLVGNVYVKFRREEDGERAVAELSNRWFNGQAVHG + V C
Sbjct: 61 NVCDNLGDHLVGNVYVKFRREEDGERAVAELSNRWFNGQAVHGNVPEVASATSCIC 116
>gi|68800138 U2 small nuclear RNA auxillary factor 1 isoform c [Homo
sapiens]
Length = 167
Score = 205 bits (521), Expect = 2e-53
Identities = 95/130 (73%), Positives = 111/130 (85%), Gaps = 5/130 (3%)
Query: 42 FSQEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDGERAVAELSNRWFNGQAV 101
F +EVFTE++EKYGE+EEMNVCDNLGDHLVGNVYVKFRREED E+AV +L+NRWFNGQ +
Sbjct: 8 FFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 67
Query: 102 HGELSPVTDFRESCCRQYEMGECTRGGFCNFMHLRPISQNLQRQLYGRGPRRRSPPRFHT 161
H ELSPVTDFRE+CCRQYEMGECTRGGFCNFMHL+PIS+ L+R+LYGR RR+ + +
Sbjct: 68 HAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRRELYGR--RRK---KHRS 122
Query: 162 GHHPRERNHR 171
RER R
Sbjct: 123 RSRSRERRSR 132
>gi|4827046 U2 small nuclear RNA auxiliary factor 1-like 2 [Homo
sapiens]
Length = 482
Score = 106 bits (264), Expect = 1e-23
Identities = 69/226 (30%), Positives = 101/226 (44%), Gaps = 57/226 (25%)
Query: 12 EKDKVNCSFYFKIGVCRHGDRCSRLHNKPTFS---------------------------- 43
EKD+ NC FY K G CR GDRCSR HN PT S
Sbjct: 166 EKDRANCPFYSKTGACRFGDRCSRKHNFPTSSPTLLIKSMFTTFGMEQCRRDDYDPDASL 225
Query: 44 ----QEVFTELQEKY----------GEIEEMNVCDNLGDHLVGNVYVKFRREEDGERAVA 89
+E + + + Y G++ + V NL HL GNVYV+++ EE+ + A++
Sbjct: 226 EYSEEETYQQFLDFYEDVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALS 285
Query: 90 ELSNRWFNGQAVHGELSPVTDFRESCCRQYEMGECTRGGFCNFMHLRPISQN----LQRQ 145
+ RW+ G+ + E PVT ++ + C +E+ +C RG CNF+H+ N R
Sbjct: 286 LFNGRWYAGRQLQCEFCPVTRWKMAICGLFEIQQCPRGKHCNFLHVFRNPNNEFWEANRD 345
Query: 146 LY----------GRGPRRRSPPRFHTGHHPRERNHR-CSPDHWHGR 180
+Y G+ RR H ++ R R R SPDH + R
Sbjct: 346 IYLSPDRTGSSFGKNSERRERMGHHDDYYSRLRGRRNPSPDHSYKR 391
>gi|5729939 cleavage and polyadenylation specific factor 4, 30kDa
isoform 1 [Homo sapiens]
Length = 269
Score = 39.3 bits (90), Expect = 0.002
Identities = 43/159 (27%), Positives = 63/159 (39%), Gaps = 29/159 (18%)
Query: 16 VNCSFYFKIGVCRHGDRCSRLHNKP-TFSQEVFTELQEKYGEIEEMNVCDNLGDHLVGNV 74
V C + + G+C+ GD+C LH T E + K+GE C L H+
Sbjct: 66 VVCKHWLR-GLCKKGDQCEFLHEYDMTKMPECY--FYSKFGECSNKE-CPFL--HI---- 115
Query: 75 YVKFRREEDGERAVAELSNRWFN-GQAVHGELSPVTDFRESCCRQYEMGECTRGGFCNFM 133
D E + + W++ G HG L R C Y +G C G C FM
Sbjct: 116 --------DPESKIKDCP--WYDRGFCKHGPLCRHRHTRRVICVNYLVGFCPEGPSCKFM 165
Query: 134 HLR---PISQNLQRQLYGRGPRRRSPPRFHTGHHPRERN 169
H R P+ Q L P++ PP + + P +R+
Sbjct: 166 HPRFELPMGTTEQPPL----PQQTQPPAKQSNNPPLQRS 200
>gi|14249452 zinc finger CCCH-type containing 10 [Homo sapiens]
Length = 434
Score = 37.4 bits (85), Expect = 0.007
Identities = 50/184 (27%), Positives = 65/184 (35%), Gaps = 34/184 (18%)
Query: 22 FKIGVCRHGDRCSRLHNKPTFSQEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKF--- 78
F VC+ G RC H P S E+ E C + + +F
Sbjct: 45 FLRNVCKRGKRCRYRH--PDMS-----EVSNLGVSKNEFIFCHDFQNKECSRPNCRFIHG 97
Query: 79 -RREEDGERAVAELSNRWFNGQAVHGELSP--VTDFRESC--CRQYEMGECTRGGFCNFM 133
+ +EDG + EL R A LSP + + +E CR + G+C RG C F
Sbjct: 98 SKEDEDGYKKTGELPPRLRQKVAAGLGLSPADLPNGKEEVPICRDFLKGDCQRGAKCKFR 157
Query: 134 HLRPISQNLQRQLYGRG--------PRRRS--------PPRFHTGHHP---RERNHRCSP 174
HL+ + R G G P RR P R H P R R C P
Sbjct: 158 HLQRDFEFDARGGGGTGGGSTGSVLPGRRHDLYDIYDLPDRGFEDHEPGPKRRRGGCCPP 217
Query: 175 DHWH 178
D H
Sbjct: 218 DGPH 221
>gi|125987603 cleavage and polyadenylation specific factor 4, 30kDa
isoform 2 [Homo sapiens]
Length = 244
Score = 35.8 bits (81), Expect = 0.021
Identities = 41/147 (27%), Positives = 57/147 (38%), Gaps = 29/147 (19%)
Query: 16 VNCSFYFKIGVCRHGDRCSRLHNKP-TFSQEVFTELQEKYGEIEEMNVCDNLGDHLVGNV 74
V C + + G+C+ GD+C LH T E + K+GE C L H+
Sbjct: 66 VVCKHWLR-GLCKKGDQCEFLHEYDMTKMPECY--FYSKFGECSNKE-CPFL--HI---- 115
Query: 75 YVKFRREEDGERAVAELSNRWFN-GQAVHGELSPVTDFRESCCRQYEMGECTRGGFCNFM 133
D E + + W++ G HG L R C Y +G C G C FM
Sbjct: 116 --------DPESKIKDCP--WYDRGFCKHGPLCRHRHTRRVICVNYLVGFCPEGPSCKFM 165
Query: 134 HLR---PISQNLQRQLYGRGPRRRSPP 157
H R P+ Q L P++ PP
Sbjct: 166 HPRFELPMGTTEQPPL----PQQTQPP 188
>gi|253970456 HIV-1 Tat specific factor 1 [Homo sapiens]
Length = 755
Score = 35.0 bits (79), Expect = 0.035
Identities = 32/116 (27%), Positives = 52/116 (44%), Gaps = 9/116 (7%)
Query: 53 KYGEIEEMNVCDNLGDHLVGNVYVKFRREEDGERAVAELSNRWFNGQAVHGEL-SPVTDF 111
K+G+I ++ + D H G V FR E+ + + L RWF G+ + + TD+
Sbjct: 297 KFGQIRKLLLFDR---HPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDGTTDY 353
Query: 112 R-ESCCRQYEMGECTRGGFCNFMHLRPISQNLQRQLYGRGPRRRSPPRF-HTGHHP 165
+ E R+ E E R G+ F++ ++ L+R R P R H HP
Sbjct: 354 QVEETSRERE--ERLR-GWEAFLNAPEANRGLRRSDSVSASERAGPSRARHFSEHP 406
>gi|21361437 HIV-1 Tat specific factor 1 [Homo sapiens]
Length = 755
Score = 35.0 bits (79), Expect = 0.035
Identities = 32/116 (27%), Positives = 52/116 (44%), Gaps = 9/116 (7%)
Query: 53 KYGEIEEMNVCDNLGDHLVGNVYVKFRREEDGERAVAELSNRWFNGQAVHGEL-SPVTDF 111
K+G+I ++ + D H G V FR E+ + + L RWF G+ + + TD+
Sbjct: 297 KFGQIRKLLLFDR---HPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDGTTDY 353
Query: 112 R-ESCCRQYEMGECTRGGFCNFMHLRPISQNLQRQLYGRGPRRRSPPRF-HTGHHP 165
+ E R+ E E R G+ F++ ++ L+R R P R H HP
Sbjct: 354 QVEETSRERE--ERLR-GWEAFLNAPEANRGLRRSDSVSASERAGPSRARHFSEHP 406
>gi|118150660 erythropoietin 4 immediate early response [Homo
sapiens]
Length = 426
Score = 34.7 bits (78), Expect = 0.046
Identities = 26/107 (24%), Positives = 46/107 (42%), Gaps = 12/107 (11%)
Query: 31 DRCSRLHNKPTFSQEVFTEL---QEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDGERA 87
D+ L NK Q+ F + Q K+G+ V + + K +++D ++
Sbjct: 26 DKTFGLKNKKGAKQQKFIKAVTHQVKFGQQNPRQVAQSEAE--------KKLKKDDKKKE 77
Query: 88 VAELSNRWFNGQAVHGELSPVTDFRESCCRQYEMGECTRGGFCNFMH 134
+ EL N F ++S D + C ++ G+CT+G C F H
Sbjct: 78 LQEL-NELFKPVVAAQKISKGADPKSVVCAFFKQGQCTKGDKCKFSH 123
>gi|223468622 makorin ring finger protein 1 isoform 2 [Homo sapiens]
Length = 329
Score = 33.9 bits (76), Expect = 0.078
Identities = 34/142 (23%), Positives = 50/142 (35%), Gaps = 29/142 (20%)
Query: 21 YFKIGVCRHGDRCSRLHNKPTFSQE-VFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFR 79
YF+ G C +GDRC H+KP +E TEL K ++ +G + N
Sbjct: 92 YFQRGYCIYGDRCRYEHSKPLKQEEATATELTTKSSLAASSSLSSIVGPLVEMNTGEAES 151
Query: 80 REEDGERAVAELSNRWFN------GQAVHGELSP---------------------VTDFR 112
R + V S W N GQ G +P + +
Sbjct: 152 RNSN-FATVGAGSEDWVNAIEFVPGQPYCGRTAPSCTEAPLQGSVTKEESEKEQTAVETK 210
Query: 113 ESCCRQYEMGECTRGGFCNFMH 134
+ C +GEC G C ++H
Sbjct: 211 KQLCPYAAVGECRYGENCVYLH 232
Score = 26.9 bits (58), Expect = 9.6
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 116 CRQYEMGECTRGGFCNFMHLRPISQ 140
C+ ++ G C G C + H +P+ Q
Sbjct: 90 CKYFQRGYCIYGDRCRYEHSKPLKQ 114
>gi|223468620 makorin ring finger protein 1 isoform 1 [Homo sapiens]
Length = 482
Score = 33.9 bits (76), Expect = 0.078
Identities = 34/142 (23%), Positives = 50/142 (35%), Gaps = 29/142 (20%)
Query: 21 YFKIGVCRHGDRCSRLHNKPTFSQE-VFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFR 79
YF+ G C +GDRC H+KP +E TEL K ++ +G + N
Sbjct: 92 YFQRGYCIYGDRCRYEHSKPLKQEEATATELTTKSSLAASSSLSSIVGPLVEMNTGEAES 151
Query: 80 REEDGERAVAELSNRWFN------GQAVHGELSP---------------------VTDFR 112
R + V S W N GQ G +P + +
Sbjct: 152 RNSN-FATVGAGSEDWVNAIEFVPGQPYCGRTAPSCTEAPLQGSVTKEESEKEQTAVETK 210
Query: 113 ESCCRQYEMGECTRGGFCNFMH 134
+ C +GEC G C ++H
Sbjct: 211 KQLCPYAAVGECRYGENCVYLH 232
Score = 26.9 bits (58), Expect = 9.6
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 116 CRQYEMGECTRGGFCNFMHLRPISQ 140
C+ ++ G C G C + H +P+ Q
Sbjct: 90 CKYFQRGYCIYGDRCRYEHSKPLKQ 114
>gi|13899354 RNA binding motif protein 4B [Homo sapiens]
Length = 359
Score = 33.1 bits (74), Expect = 0.13
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 7/67 (10%)
Query: 40 PTFSQEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDGERAVAELSNRWFNGQ 99
PT + + E+YG + E CD + D+ +V R ED A+ L N F G+
Sbjct: 87 PTCTNQELRAKFEEYGPVIE---CDIVKDY----AFVHMERAEDAVEAIRGLDNTEFQGK 139
Query: 100 AVHGELS 106
+H +LS
Sbjct: 140 RMHVQLS 146
>gi|93277122 RNA binding motif protein 4 [Homo sapiens]
Length = 364
Score = 32.7 bits (73), Expect = 0.17
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 49 ELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDGERAVAELSNRWFNGQAVHGELS 106
EL+ K+ E + CD + D+ +V R ED A+ L N F G+ +H +LS
Sbjct: 93 ELRAKFEEYGPVIECDIVKDY----AFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 146
>gi|224549005 RNA binding motif protein 17 [Homo sapiens]
Length = 401
Score = 32.3 bits (72), Expect = 0.23
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 52 EKYGEIEEMNVCDNLG--DHLVGNVYVKFRREEDGERAVAELSNRWFNGQAVHGELSPVT 109
EKYG++ + + + G D ++++F R E +AV +L+ R+F G+ V +
Sbjct: 331 EKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFYNLD 390
Query: 110 DFR 112
FR
Sbjct: 391 KFR 393
>gi|14249678 RNA binding motif protein 17 [Homo sapiens]
Length = 401
Score = 32.3 bits (72), Expect = 0.23
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 52 EKYGEIEEMNVCDNLG--DHLVGNVYVKFRREEDGERAVAELSNRWFNGQAVHGELSPVT 109
EKYG++ + + + G D ++++F R E +AV +L+ R+F G+ V +
Sbjct: 331 EKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFYNLD 390
Query: 110 DFR 112
FR
Sbjct: 391 KFR 393
>gi|54792138 helicase with zinc finger domain [Homo sapiens]
Length = 1942
Score = 31.6 bits (70), Expect = 0.39
Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 9/77 (11%)
Query: 18 CSFYFKIGVCRHGDRCSRLHNKPTFSQEVFTELQEKYG----EIEEMNVCDNLGDHLVGN 73
C + + G+CR+G +C+ H SQE E Q++Y ++++ N L +
Sbjct: 184 CKRFLEQGICRYGAQCTSAH-----SQEELAEWQKRYASRLIKLKQQNENKQLSGSYMET 238
Query: 74 VYVKFRREEDGERAVAE 90
+ K+ E+ ++E
Sbjct: 239 LIEKWMNSLSPEKVLSE 255
>gi|209862867 poly-U binding splicing factor 60KDa isoform c [Homo
sapiens]
Length = 516
Score = 31.2 bits (69), Expect = 0.51
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 8/55 (14%)
Query: 51 QEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDGERAVAELSNRWFNGQAVHGEL 105
QEK GE E+ + + ++V+F + +A+ L+ RWF G+ V E+
Sbjct: 457 QEKQGEEEDAEI--------IVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEV 503
>gi|17298690 poly-U binding splicing factor 60KDa isoform b [Homo
sapiens]
Length = 542
Score = 31.2 bits (69), Expect = 0.51
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 8/55 (14%)
Query: 51 QEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDGERAVAELSNRWFNGQAVHGEL 105
QEK GE E+ + + ++V+F + +A+ L+ RWF G+ V E+
Sbjct: 483 QEKQGEEEDAEI--------IVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEV 529
>gi|17978512 poly-U binding splicing factor 60KDa isoform a [Homo
sapiens]
Length = 559
Score = 31.2 bits (69), Expect = 0.51
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 8/55 (14%)
Query: 51 QEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDGERAVAELSNRWFNGQAVHGEL 105
QEK GE E+ + + ++V+F + +A+ L+ RWF G+ V E+
Sbjct: 500 QEKQGEEEDAEI--------IVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEV 546
>gi|46367787 poly(A) binding protein, cytoplasmic 1 [Homo sapiens]
Length = 636
Score = 31.2 bits (69), Expect = 0.51
Identities = 16/58 (27%), Positives = 29/58 (50%)
Query: 45 EVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDGERAVAELSNRWFNGQAVH 102
E +L K+G + V + G +V F R ED ++AV E++ + NG+ ++
Sbjct: 205 ERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIY 262
>gi|45238849 poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
Length = 631
Score = 31.2 bits (69), Expect = 0.51
Identities = 16/58 (27%), Positives = 29/58 (50%)
Query: 45 EVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDGERAVAELSNRWFNGQAVH 102
E +L K+G + V + G +V F R ED ++AV E++ + NG+ ++
Sbjct: 205 ERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIY 262
Score = 28.5 bits (62), Expect = 3.3
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 8/70 (11%)
Query: 54 YGEIEEMNV-CDNLGDHLVGNVYVKFRREEDGERAVAELSNRWFNGQAVHGELSPVTDFR 112
+G I NV CD G G +V F E ERA+ +++ NG+ V V F+
Sbjct: 122 FGNILSCNVVCDENGSKGYG--FVHFETHEAAERAIKKMNGMLLNGRKVF-----VGQFK 174
Query: 113 ESCCRQYEMG 122
R+ E+G
Sbjct: 175 SRKEREAELG 184
>gi|155722994 zinc finger CCCH-type containing 3 [Homo sapiens]
Length = 948
Score = 30.8 bits (68), Expect = 0.66
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 12 EKDKVNCSFYFKIGVCRHGDRCSRLHN 38
EK K C +Y + G C G+RC +H+
Sbjct: 667 EKRKEYCMYYNRFGRCNRGERCPYIHD 693
>gi|5902158 ring finger protein 113A [Homo sapiens]
Length = 343
Score = 30.4 bits (67), Expect = 0.87
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 18 CSFYFKIGVCRHGDRCSRLHNKPTFSQ--EVFTELQE-KYGEIEEMN 61
C Y + G C GD C LH++ + ++ EL E +YG E+ N
Sbjct: 202 CKDYKETGFCGFGDSCKFLHDRSDYKHGWQIERELDEGRYGVYEDEN 248
>gi|32880199 makorin ring finger protein 2 [Homo sapiens]
Length = 416
Score = 30.4 bits (67), Expect = 0.87
Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
Query: 116 CRQYEMGECTRGGFCNFMHLRPISQNLQRQLYGRGPRRRSPPRFHTGHHPRE 167
C+ Y+ G C G C + H RP + G P FH+ H P E
Sbjct: 37 CKYYQKGYCAYGTRCRYDHTRPSA--AAGGAVGTMAHSVPSPAFHSPHPPSE 86
>gi|122937239 zinc finger CCCH-type domain containing 5 [Homo
sapiens]
Length = 886
Score = 30.4 bits (67), Expect = 0.87
Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 6/60 (10%)
Query: 99 QAVHGELSPVTDFRESCCRQYEMGECTRGGFCNFMHLR--PISQNLQRQLYGRGPRRRSP 156
Q H E+ T C + G C RG FC F H+ P+S +LQ P + P
Sbjct: 363 QQFHPEIYKST----KCNDMQQSGSCPRGPFCAFAHVEQPPLSDDLQPSSAVSSPTQPGP 418
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.324 0.140 0.463
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,089,318
Number of Sequences: 37866
Number of extensions: 373267
Number of successful extensions: 1210
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 1103
Number of HSP's gapped (non-prelim): 121
length of query: 181
length of database: 18,247,518
effective HSP length: 96
effective length of query: 85
effective length of database: 14,612,382
effective search space: 1242052470
effective search space used: 1242052470
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.