HTATSF1 12964

Name: HTATSF1	Sequence: fasta or formatted (755aa)		NCBI GI: 21361437
Description: HIV-1 Tat specific factor 1		Referenced in: RNA Polymerase and General Transcription Factors
Other entries for this name: alt mRNA [755aa] HIV-1 Tat specific factor 1
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.2 39 2 C cysteine 1.3 10 2 D aspartate 11.8 89 6 E glutamate 18.1 137 4 F phenylalanine 4.1 31 1 G glycine 7.3 55 2 H histidine 1.2 9 1 I isoleucine 2.1 16 2 K lysine 9.0 68 5 L leucine 6.1 46 3 M methionine 1.3 10 1 N asparagine 3.3 25 2 P proline 3.7 28 2 Q glutamine 2.9 22 2 R arginine 4.8 36 2 S serine 8.1 61 3 T threonine 3.6 27 2 V valine 3.3 25 2 W tryptophan 0.9 7 1 Y tyrosine 1.9 14 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 HIV-1 Tat specific factor 1 HTATSF1 1.000 HIV-1 Tat specific factor 1 RPGR 0.064 retinitis pigmentosa GTPase regulator isoform C [Hom... DSPP 0.041 dentin sialophosphoprotein preproprotein EIF5B 0.041 eukaryotic translation initiation factor 5B IWS1 0.041 IWS1 homolog ANKRD11 0.041 ankyrin repeat domain 11 LEO1 0.040 Leo1, Paf1/RNA polymerase II complex component, homo... MDN1 0.036 MDN1, midasin homolog RP1L1 0.036 retinitis pigmentosa 1-like 1 ACRC 0.035 ACRC protein RBM25 0.034 RNA binding motif protein 25 CDC2L1 0.034 cell division cycle 2-like 1 (PITSLRE proteins) isof... CDC2L1 0.034 cell division cycle 2-like 1 (PITSLRE proteins) isof... DMP1 0.034 dentin matrix acidic phosphoprotein 1 isoform 1 precu... DMP1 0.034 dentin matrix acidic phosphoprotein 1 isoform 2 pre... CDC2L2 0.034 cell division cycle 2-like 2 isoform 1 LOC440243 0.034 PREDICTED: Putative golgin subfamily A member 6-lik... NSBP1 0.033 nucleosomal binding protein 1 MAP1B 0.033 microtubule-associated protein 1B NEFM 0.032 neurofilament, medium polypeptide 150kDa isoform 1 ... NEFM 0.032 neurofilament, medium polypeptide 150kDa isoform 2 ... LOC283685 0.032 PREDICTED: golgi autoantigen, golgin subfamily a-li... CYLC1 0.032 cylicin, basic protein of sperm head cytoskeleton 1... LOC283767 0.032 golgi autoantigen, golgin subfamily a-like CDC2L1 0.031 cell division cycle 2-like 1 (PITSLRE proteins) isof... CDC2L1 0.031 cell division cycle 2-like 1 (PITSLRE proteins) isof... CDC2L1 0.031 cell division cycle 2-like 1 (PITSLRE proteins) isof... CDC2L2 0.031 cell division cycle 2-like 2 isoform 4 LOC727832 0.030 golgi autoantigen, golgin subfamily a-like Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.