Guide to the Human Genome
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Name: HTATSF1 Sequence: fasta or formatted (755aa) NCBI GI: 21361437
Description:

HIV-1 Tat specific factor 1

Referenced in:

RNA Polymerase and General Transcription Factors

Other entries for this name:
alt mRNA [755aa] HIV-1 Tat specific factor 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.2         39           2
 C cysteine            1.3         10           2
 D aspartate          11.8         89           6
 E glutamate          18.1        137           4
 F phenylalanine       4.1         31           1
 G glycine             7.3         55           2
 H histidine           1.2          9           1
 I isoleucine          2.1         16           2
 K lysine              9.0         68           5
 L leucine             6.1         46           3
 M methionine          1.3         10           1
 N asparagine          3.3         25           2
 P proline             3.7         28           2
 Q glutamine           2.9         22           2
 R arginine            4.8         36           2
 S serine              8.1         61           3
 T threonine           3.6         27           2
 V valine              3.3         25           2
 W tryptophan          0.9          7           1
 Y tyrosine            1.9         14           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   HIV-1 Tat specific factor 1 
HTATSF1               1.000   HIV-1 Tat specific factor 1 
RPGR                  0.064   retinitis pigmentosa GTPase regulator isoform C [Hom...
DSPP                  0.041   dentin sialophosphoprotein preproprotein 
EIF5B                 0.041   eukaryotic translation initiation factor 5B 
IWS1                  0.041   IWS1 homolog 
ANKRD11               0.041   ankyrin repeat domain 11 
LEO1                  0.040   Leo1, Paf1/RNA polymerase II complex component, homo...
MDN1                  0.036   MDN1, midasin homolog 
RP1L1                 0.036   retinitis pigmentosa 1-like 1 
ACRC                  0.035   ACRC protein 
RBM25                 0.034   RNA binding motif protein 25 
CDC2L1                0.034   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.034   cell division cycle 2-like 1 (PITSLRE proteins) isof...
DMP1                  0.034   dentin matrix acidic phosphoprotein 1 isoform 1 precu...
DMP1                  0.034   dentin matrix acidic phosphoprotein 1 isoform 2 pre...
CDC2L2                0.034   cell division cycle 2-like 2 isoform 1 
LOC440243             0.034   PREDICTED: Putative golgin subfamily A member 6-lik...
NSBP1                 0.033   nucleosomal binding protein 1 
MAP1B                 0.033   microtubule-associated protein 1B 
NEFM                  0.032   neurofilament, medium polypeptide 150kDa isoform 1 ...
NEFM                  0.032   neurofilament, medium polypeptide 150kDa isoform 2 ...
LOC283685             0.032   PREDICTED: golgi autoantigen, golgin subfamily a-li...
CYLC1                 0.032   cylicin, basic protein of sperm head cytoskeleton 1...
LOC283767             0.032   golgi autoantigen, golgin subfamily a-like 
CDC2L1                0.031   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.031   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.031   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L2                0.031   cell division cycle 2-like 2 isoform 4 
LOC727832             0.030   golgi autoantigen, golgin subfamily a-like 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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