Guide to the Human Genome
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Name: RBM4B Sequence: fasta or formatted (359aa) NCBI GI: 13899354
Description:

RNA binding motif protein 4B

Referenced in:

RNA-binding Proteins
Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.3         44           6
 C cysteine            1.7          6           1
 D aspartate           4.7         17           1
 E glutamate           7.8         28           2
 F phenylalanine       2.2          8           1
 G glycine             6.7         24           1
 H histidine           3.1         11           2
 I isoleucine          3.1         11           2
 K lysine              4.2         15           1
 L leucine             5.6         20           2
 M methionine          2.8         10           1
 N asparagine          4.2         15           1
 P proline             3.3         12           1
 Q glutamine           3.6         13           1
 R arginine            7.2         26           2
 S serine              7.5         27           2
 T threonine           6.1         22           2
 V valine              5.8         21           1
 W tryptophan          0.3          1           1
 Y tyrosine            7.8         28           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   RNA binding motif protein 4B 
RBM4                  0.889   RNA binding motif protein 4 
RBM14                 0.168   RNA binding motif protein 14 
RBM47                 0.075   RNA binding motif protein 47 isoform b 
CUGBP1                0.067   CUG triplet repeat, RNA-binding protein 1 isoform 3 ...
CUGBP1                0.067   CUG triplet repeat, RNA-binding protein 1 isoform 1 [...
CUGBP1                0.067   CUG triplet repeat, RNA-binding protein 1 isoform 2 ...
PABPC1                0.067   poly(A) binding protein, cytoplasmic 1 
PABPC3                0.065   poly(A) binding protein, cytoplasmic 3 
ELAVL4                0.063   ELAV-like 4 isoform 1 
ELAVL4                0.063   ELAV-like 4 isoform 5 
ELAVL4                0.063   ELAV-like 4 isoform 4 
ELAVL4                0.063   ELAV-like 4 isoform 3 
ELAVL4                0.063   ELAV-like 4 isoform 2 
ELAVL2                0.063   ELAV (embryonic lethal, abnormal vision, Drosophila...
SFRS9                 0.063   splicing factor, arginine/serine-rich 9 
SFRS7                 0.058   splicing factor, arginine/serine-rich 7 
SFRS4                 0.057   splicing factor, arginine/serine-rich 4 
TIA1                  0.057   TIA1 protein isoform 1 
ELAVL3                0.057   ELAV-like protein 3 isoform 1 
ELAVL3                0.057   ELAV-like protein 3 isoform 2 
PABPC4                0.057   poly A binding protein, cytoplasmic 4 isoform 3 [Ho...
PABPC4                0.057   poly A binding protein, cytoplasmic 4 isoform 2 [Homo...
PABPC4                0.057   poly A binding protein, cytoplasmic 4 isoform 1 [Ho...
NONO                  0.057   non-POU domain containing, octamer-binding isoform ...
NONO                  0.057   non-POU domain containing, octamer-binding isoform ...
NONO                  0.057   non-POU domain containing, octamer-binding isoform 1...
TNRC4                 0.055   trinucleotide repeat containing 4 
CUGBP2                0.055   CUG triplet repeat, RNA binding protein 2 isoform 4...
CUGBP2                0.055   CUG triplet repeat, RNA binding protein 2 isoform 1 ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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