Guide to the Human Genome
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Name: RBM17 Sequence: fasta or formatted (401aa) NCBI GI: 14249678
Description:

RNA binding motif protein 17

Referenced in:

RNA-binding Proteins
Capping and Splicing

Other entries for this name:
alt mRNA [401aa] RNA binding motif protein 17
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7         27           2
 C cysteine            1.0          4           1
 D aspartate           7.7         31           2
 E glutamate          10.5         42           2
 F phenylalanine       3.2         13           1
 G glycine             7.2         29           2
 H histidine           1.0          4           1
 I isoleucine          3.5         14           2
 K lysine              9.0         36           2
 L leucine             7.0         28           2
 M methionine          1.5          6           1
 N asparagine          2.0          8           1
 P proline             6.2         25           3
 Q glutamine           4.2         17           1
 R arginine            8.0         32           2
 S serine              7.2         29           2
 T threonine           3.7         15           1
 V valine              7.5         30           2
 W tryptophan          0.2          1           1
 Y tyrosine            2.5         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   RNA binding motif protein 17 
RBM17                 1.000   RNA binding motif protein 17 
PUF60                 0.063   poly-U binding splicing factor 60KDa isoform c [Hom...
PUF60                 0.063   poly-U binding splicing factor 60KDa isoform b [Homo...
PUF60                 0.063   poly-U binding splicing factor 60KDa isoform a [Homo...
SFRS12                0.035   splicing factor, arginine/serine-rich 12 isoform a ...
SFRS12                0.035   splicing factor, arginine/serine-rich 12 isoform b [...
ZC3H18                0.032   zinc finger CCCH-type containing 18 
U2AF2                 0.031   U2 (RNU2) small nuclear RNA auxiliary factor 2 isofo...
U2AF2                 0.031   U2 (RNU2) small nuclear RNA auxiliary factor 2 isofor...
ZC3H13                0.031   zinc finger CCCH-type containing 13 
BAT2D1                0.030   HBxAg transactivated protein 2 
RBM25                 0.030   RNA binding motif protein 25 
LOC100131202          0.028   PREDICTED: hypothetical protein 
LOC100286959          0.028   PREDICTED: hypothetical protein XP_002343921 
MAP4K4                0.028   mitogen-activated protein kinase kinase kinase kinas...
MAP4K4                0.028   mitogen-activated protein kinase kinase kinase kinas...
CROP                  0.027   cisplatin resistance-associated overexpressed protei...
CROP                  0.027   cisplatin resistance-associated overexpressed protei...
UHMK1                 0.026   kinase interacting stathmin 
ENAH                  0.026   enabled homolog isoform a 
ENAH                  0.026   enabled homolog isoform b 
HDGF2                 0.025   hepatoma-derived growth factor-related protein 2 iso...
HDGF2                 0.025   hepatoma-derived growth factor-related protein 2 iso...
LOC100133599          0.023   PREDICTED: hypothetical protein 
LOC100134067          0.023   PREDICTED: hypothetical protein 
LOC100133599          0.023   PREDICTED: hypothetical protein 
KIAA0182              0.023   genetic suppressor element 1 isoform 2 
KIAA0182              0.023   genetic suppressor element 1 isoform 1 
UPF3B                 0.023   UPF3 regulator of nonsense transcripts homolog B iso...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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