Guide to the Human Genome
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Name: HELZ Sequence: fasta or formatted (1942aa) NCBI GI: 54792138
Description:

helicase with zinc finger domain

Referenced in:

RNases and RNA Stability
Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.1        119           2
 C cysteine            1.6         31           2
 D aspartate           3.6         69           2
 E glutamate           6.6        129           2
 F phenylalanine       3.6         70           2
 G glycine             4.5         88           2
 H histidine           3.7         71           4
 I isoleucine          4.5         87           2
 K lysine              4.8         94           3
 L leucine            10.2        198           2
 M methionine          1.5         29           1
 N asparagine          4.6         89           2
 P proline             9.1        177           4
 Q glutamine           7.7        149           3
 R arginine            5.1         99           2
 S serine              8.4        163           4
 T threonine           5.2        101           2
 V valine              5.1         99           4
 W tryptophan          0.9         17           1
 Y tyrosine            3.2         63           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   helicase with zinc finger domain 
PRIC285               0.116   PPAR-alpha interacting complex protein 285 isoform ...
PRIC285               0.063   PPAR-alpha interacting complex protein 285 isoform ...
MOV10L1               0.043   MOV10-like 1 
MOV10                 0.039   Mov10, Moloney leukemia virus 10, homolog 
MOV10                 0.039   Mov10, Moloney leukemia virus 10, homolog 
UPF1                  0.023   regulator of nonsense transcripts 1 
IGHMBP2               0.015   immunoglobulin mu binding protein 2 
DNA2                  0.014   DNA replication helicase 2 homolog 
SETX                  0.011   senataxin 
BRD4                  0.010   bromodomain-containing protein 4 isoform long 
ARID1B                0.010   AT rich interactive domain 1B (SWI1-like) isoform 1 ...
SYNJ1                 0.010   synaptojanin 1 isoform d 
ZNFX1                 0.009   zinc finger, NFX1-type containing 1 
RERE                  0.009   atrophin-1 like protein isoform b 
RERE                  0.009   atrophin-1 like protein isoform a 
RERE                  0.009   atrophin-1 like protein isoform a 
ARID1B                0.009   AT rich interactive domain 1B (SWI1-like) isoform 3 ...
PTPN23                0.009   protein tyrosine phosphatase, non-receptor type 23 [...
MLL2                  0.008   myeloid/lymphoid or mixed-lineage leukemia 2 
CCNK                  0.008   cyclin K isoform 1 
ARID1B                0.008   AT rich interactive domain 1B (SWI1-like) isoform 2 ...
SMARCA2               0.008   SWI/SNF-related matrix-associated actin-dependent re...
SMARCA2               0.008   SWI/SNF-related matrix-associated actin-dependent re...
PAXIP1                0.008   PAX interacting protein 1 
RBM33                 0.008   RNA binding motif protein 33 
FLJ22184              0.008   PREDICTED: hypothetical protein FLJ22184 
AUTS2                 0.007   autism susceptibility candidate 2 isoform 2 
NCOA6                 0.007   nuclear receptor coactivator 6 
TTN                   0.007   titin isoform N2-A 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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