Guide to the Human Genome
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Name: RBM4 Sequence: fasta or formatted (364aa) NCBI GI: 93277122
Description:

RNA binding motif protein 4

Referenced in:

RNA-binding Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.3         52          10
 C cysteine            1.9          7           1
 D aspartate           4.7         17           1
 E glutamate           7.4         27           2
 F phenylalanine       1.9          7           1
 G glycine             6.3         23           1
 H histidine           3.0         11           2
 I isoleucine          3.3         12           2
 K lysine              4.4         16           1
 L leucine             6.3         23           2
 M methionine          1.9          7           1
 N asparagine          4.1         15           2
 P proline             3.3         12           1
 Q glutamine           3.6         13           1
 R arginine            7.1         26           2
 S serine              7.4         27           1
 T threonine           6.0         22           1
 V valine              5.2         19           1
 W tryptophan          0.3          1           1
 Y tyrosine            7.4         27           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   RNA binding motif protein 4 
RBM4B                 0.882   RNA binding motif protein 4B 
RBM14                 0.162   RNA binding motif protein 14 
RBM47                 0.082   RNA binding motif protein 47 isoform b 
CUGBP1                0.066   CUG triplet repeat, RNA-binding protein 1 isoform 3 ...
CUGBP1                0.066   CUG triplet repeat, RNA-binding protein 1 isoform 1 [...
CUGBP1                0.066   CUG triplet repeat, RNA-binding protein 1 isoform 2 ...
PABPC1                0.065   poly(A) binding protein, cytoplasmic 1 
ELAVL4                0.065   ELAV-like 4 isoform 1 
ELAVL4                0.065   ELAV-like 4 isoform 5 
ELAVL4                0.065   ELAV-like 4 isoform 4 
ELAVL4                0.065   ELAV-like 4 isoform 3 
ELAVL4                0.065   ELAV-like 4 isoform 2 
PABPC3                0.063   poly(A) binding protein, cytoplasmic 3 
ELAVL2                0.063   ELAV (embryonic lethal, abnormal vision, Drosophila...
TNRC4                 0.062   trinucleotide repeat containing 4 
RBM47                 0.061   RNA binding motif protein 47 isoform a 
SFRS9                 0.059   splicing factor, arginine/serine-rich 9 
TIA1                  0.059   TIA1 protein isoform 1 
ELAVL3                0.059   ELAV-like protein 3 isoform 1 
ELAVL3                0.059   ELAV-like protein 3 isoform 2 
SFRS4                 0.058   splicing factor, arginine/serine-rich 4 
SFRS7                 0.058   splicing factor, arginine/serine-rich 7 
PABPC4                0.056   poly A binding protein, cytoplasmic 4 isoform 3 [Ho...
PABPC4                0.056   poly A binding protein, cytoplasmic 4 isoform 2 [Homo...
PABPC4                0.056   poly A binding protein, cytoplasmic 4 isoform 1 [Ho...
NONO                  0.055   non-POU domain containing, octamer-binding isoform ...
NONO                  0.055   non-POU domain containing, octamer-binding isoform ...
NONO                  0.055   non-POU domain containing, octamer-binding isoform 1...
CUGBP2                0.055   CUG triplet repeat, RNA binding protein 2 isoform 4...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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