Guide to the Human Genome
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Name: SPARCL1 Sequence: fasta or formatted (664aa) NCBI GI: 190194423
Description:

SPARC-like 1

Referenced in:

Bone and Related Tissues

Other entries for this name:
alt mRNA [664aa] SPARC-like 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.4         36           3
 C cysteine            2.3         15           1
 D aspartate           7.8         52           3
 E glutamate          13.0         86           5
 F phenylalanine       2.7         18           2
 G glycine             5.3         35           2
 H histidine           4.7         31           2
 I isoleucine          3.3         22           1
 K lysine              6.9         46           2
 L leucine             7.2         48           3
 M methionine          1.8         12           1
 N asparagine          5.7         38           1
 P proline             4.5         30           2
 Q glutamine           6.5         43           2
 R arginine            3.5         23           1
 S serine              7.8         52           3
 T threonine           5.9         39           2
 V valine              3.3         22           1
 W tryptophan          0.6          4           1
 Y tyrosine            1.8         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   SPARC-like 1 
SPARCL1               1.000   SPARC-like 1 
SPARC                 0.222   secreted protein, acidic, cysteine-rich 
RPGR                  0.038   retinitis pigmentosa GTPase regulator isoform C [Hom...
SPOCK3                0.032   testican 3 isoform 1 
SPOCK3                0.032   testican 3 isoform 2 
RP1L1                 0.031   retinitis pigmentosa 1-like 1 
LEO1                  0.030   Leo1, Paf1/RNA polymerase II complex component, homo...
DSPP                  0.030   dentin sialophosphoprotein preproprotein 
CYLC1                 0.029   cylicin, basic protein of sperm head cytoskeleton 1...
IWS1                  0.028   IWS1 homolog 
LOC645202             0.028   PREDICTED: hypothetical protein LOC645202 
MDN1                  0.028   MDN1, midasin homolog 
HRC                   0.026   histidine rich calcium binding protein precursor [Hom...
CALD1                 0.026   caldesmon 1 isoform 1 
NSBP1                 0.025   nucleosomal binding protein 1 
FSTL3                 0.025   follistatin-like 3 glycoprotein precursor 
CDC2L1                0.025   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.025   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.025   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L2                0.025   cell division cycle 2-like 2 isoform 1 
HTATSF1               0.025   HIV-1 Tat specific factor 1 
HTATSF1               0.025   HIV-1 Tat specific factor 1 
DMP1                  0.025   dentin matrix acidic phosphoprotein 1 isoform 2 pre...
DMP1                  0.024   dentin matrix acidic phosphoprotein 1 isoform 1 precu...
LOC100133758          0.024   PREDICTED: hypothetical protein, partial 
CDC2L1                0.024   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.024   cell division cycle 2-like 1 (PITSLRE proteins) isof...
FLG                   0.023   filaggrin 
LOC283685             0.023   PREDICTED: golgi autoantigen, golgin subfamily a-li...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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