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Search of human proteins with 9256584
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|9256584 protocadherin alpha 2 isoform 1 precursor [Homo
sapiens]
(948 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|9256584 protocadherin alpha 2 isoform 1 precursor [Homo sapiens] 1862 0.0
gi|14165405 protocadherin alpha 2 isoform 2 precursor [Homo sapi... 1548 0.0
gi|9256588 protocadherin alpha 4 isoform 1 precursor [Homo sapiens] 1548 0.0
gi|9256582 protocadherin alpha 1 isoform 1 precursor [Homo sapiens] 1543 0.0
gi|9256586 protocadherin alpha 3 isoform 1 precursor [Homo sapiens] 1540 0.0
gi|9256580 protocadherin alpha 13 isoform 1 precursor [Homo sapi... 1518 0.0
gi|9256592 protocadherin alpha 6 isoform 1 precursor [Homo sapiens] 1509 0.0
gi|9256576 protocadherin alpha 11 isoform 1 precursor [Homo sapi... 1503 0.0
gi|9256590 protocadherin alpha 5 isoform 1 precursor [Homo sapiens] 1501 0.0
gi|9256594 protocadherin alpha 7 isoform 1 precursor [Homo sapiens] 1493 0.0
gi|9256596 protocadherin alpha 8 isoform 1 precursor [Homo sapiens] 1489 0.0
gi|14165425 protocadherin alpha 9 isoform 1 precursor [Homo sapi... 1484 0.0
gi|9256578 protocadherin alpha 12 isoform 1 precursor [Homo sapi... 1483 0.0
gi|9256574 protocadherin alpha 10 isoform 1 precursor [Homo sapi... 1479 0.0
gi|14165413 protocadherin alpha 4 isoform 2 precursor [Homo sapi... 1236 0.0
gi|14165400 protocadherin alpha 1 isoform 2 precursor [Homo sapi... 1232 0.0
gi|14165410 protocadherin alpha 3 isoform 2 precursor [Homo sapi... 1226 0.0
gi|14165397 protocadherin alpha 13 isoform 2 precursor [Homo sap... 1207 0.0
gi|14165390 protocadherin alpha 6 isoform 2 precursor [Homo sapi... 1197 0.0
gi|14165416 protocadherin alpha 5 isoform 2 precursor [Homo sapi... 1195 0.0
gi|14165387 protocadherin alpha 11 isoform 2 precursor [Homo sap... 1189 0.0
gi|14165419 protocadherin alpha 7 isoform 2 precursor [Homo sapi... 1187 0.0
gi|14165422 protocadherin alpha 8 isoform 2 precursor [Homo sapi... 1179 0.0
gi|14165392 protocadherin alpha 12 isoform 2 precursor [Homo sap... 1176 0.0
gi|7662068 protocadherin alpha 9 isoform 2 precursor [Homo sapiens] 1170 0.0
gi|14165381 protocadherin alpha 10 isoform 2 precursor [Homo sap... 1167 0.0
gi|9256600 protocadherin alpha subfamily C, 2 isoform 1 precurso... 872 0.0
gi|14165402 protocadherin alpha 1 isoform 3 precursor [Homo sapi... 817 0.0
gi|14165383 protocadherin alpha 10 isoform 3 precursor [Homo sap... 783 0.0
gi|14165394 protocadherin alpha 6 isoform 3 precursor [Homo sapi... 780 0.0
>gi|9256584 protocadherin alpha 2 isoform 1 precursor [Homo sapiens]
Length = 948
Score = 1862 bits (4824), Expect = 0.0
Identities = 948/948 (100%), Positives = 948/948 (100%)
Query: 1 MASSIRRGRGAWTRLLSLLLLAAWEVGSGQLRYSVPEEAKHGTFVGRIAQDLGLELEELV 60
MASSIRRGRGAWTRLLSLLLLAAWEVGSGQLRYSVPEEAKHGTFVGRIAQDLGLELEELV
Sbjct: 1 MASSIRRGRGAWTRLLSLLLLAAWEVGSGQLRYSVPEEAKHGTFVGRIAQDLGLELEELV 60
Query: 61 PRLFRVASKRHGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHVEVIVDRPLQVFHVE 120
PRLFRVASKRHGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHVEVIVDRPLQVFHVE
Sbjct: 61 PRLFRVASKRHGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHVEVIVDRPLQVFHVE 120
Query: 121 VEVKDINDNPPIFPMTVKTIRFPESRLLDSRFPLEGASDADIGVNALLSYKLSSSEFFFL 180
VEVKDINDNPPIFPMTVKTIRFPESRLLDSRFPLEGASDADIGVNALLSYKLSSSEFFFL
Sbjct: 121 VEVKDINDNPPIFPMTVKTIRFPESRLLDSRFPLEGASDADIGVNALLSYKLSSSEFFFL 180
Query: 181 DIQANDELSESLSLVLGKSLDREETAEVNLLLVATDGGKPELTGTVQILIKVLDVNDNEP 240
DIQANDELSESLSLVLGKSLDREETAEVNLLLVATDGGKPELTGTVQILIKVLDVNDNEP
Sbjct: 181 DIQANDELSESLSLVLGKSLDREETAEVNLLLVATDGGKPELTGTVQILIKVLDVNDNEP 240
Query: 241 TFAQSVYKVKLLENTANGTLVVKLNASDADEGPNSEIVYSLGSDVSSTIQTKFTIDPISG 300
TFAQSVYKVKLLENTANGTLVVKLNASDADEGPNSEIVYSLGSDVSSTIQTKFTIDPISG
Sbjct: 241 TFAQSVYKVKLLENTANGTLVVKLNASDADEGPNSEIVYSLGSDVSSTIQTKFTIDPISG 300
Query: 301 EIRTKGKLDYEEAKSYEIQVTATDKGTPSMSGHCKISLKLVDINDNTPEVSITSLSLPIS 360
EIRTKGKLDYEEAKSYEIQVTATDKGTPSMSGHCKISLKLVDINDNTPEVSITSLSLPIS
Sbjct: 301 EIRTKGKLDYEEAKSYEIQVTATDKGTPSMSGHCKISLKLVDINDNTPEVSITSLSLPIS 360
Query: 361 ENASLGTVIALITVSDRDSGTNGHVTCSLTPHVPFKLVSTFKNYYSLVLDSALDRESVSA 420
ENASLGTVIALITVSDRDSGTNGHVTCSLTPHVPFKLVSTFKNYYSLVLDSALDRESVSA
Sbjct: 361 ENASLGTVIALITVSDRDSGTNGHVTCSLTPHVPFKLVSTFKNYYSLVLDSALDRESVSA 420
Query: 421 YELVVTARDGGSPSLWATTSVSIEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAW 480
YELVVTARDGGSPSLWATTSVSIEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAW
Sbjct: 421 YELVVTARDGGSPSLWATTSVSIEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAW 480
Query: 481 DADAQENALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEEVELLQFQVSARDA 540
DADAQENALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEEVELLQFQVSARDA
Sbjct: 481 DADAQENALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEEVELLQFQVSARDA 540
Query: 541 GVPPLGSNVTLQVFVLDENDNAPALLAPRAGTAAGAVSELVPWSVGAGHVVAKVRAVDAD 600
GVPPLGSNVTLQVFVLDENDNAPALLAPRAGTAAGAVSELVPWSVGAGHVVAKVRAVDAD
Sbjct: 541 GVPPLGSNVTLQVFVLDENDNAPALLAPRAGTAAGAVSELVPWSVGAGHVVAKVRAVDAD 600
Query: 601 SGYNAWLSYELQLGTGSARIPFRVGLYTGEISTTRALDEADSPRHRLLVLVKDHGEPALT 660
SGYNAWLSYELQLGTGSARIPFRVGLYTGEISTTRALDEADSPRHRLLVLVKDHGEPALT
Sbjct: 601 SGYNAWLSYELQLGTGSARIPFRVGLYTGEISTTRALDEADSPRHRLLVLVKDHGEPALT 660
Query: 661 ATATVLVSLVESGQAPKASSRAWVGAAGSEATLVDVNVYLIIAICAVSSLLVLTVLLYTA 720
ATATVLVSLVESGQAPKASSRAWVGAAGSEATLVDVNVYLIIAICAVSSLLVLTVLLYTA
Sbjct: 661 ATATVLVSLVESGQAPKASSRAWVGAAGSEATLVDVNVYLIIAICAVSSLLVLTVLLYTA 720
Query: 721 LRCSVPPTEGARAPGKPTLVCSSAVGSWSYSQQRRQRVCSGEDPPKTDLMAFSPSLSQGP 780
LRCSVPPTEGARAPGKPTLVCSSAVGSWSYSQQRRQRVCSGEDPPKTDLMAFSPSLSQGP
Sbjct: 721 LRCSVPPTEGARAPGKPTLVCSSAVGSWSYSQQRRQRVCSGEDPPKTDLMAFSPSLSQGP 780
Query: 781 DSAEEKQLSESEYVGKPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPTV 840
DSAEEKQLSESEYVGKPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPTV
Sbjct: 781 DSAEEKQLSESEYVGKPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPTV 840
Query: 841 SSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIRQE 900
SSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIRQE
Sbjct: 841 SSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIRQE 900
Query: 901 PTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ 948
PTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
Sbjct: 901 PTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ 948
>gi|14165405 protocadherin alpha 2 isoform 2 precursor [Homo
sapiens]
Length = 824
Score = 1548 bits (4008), Expect = 0.0
Identities = 796/796 (100%), Positives = 796/796 (100%)
Query: 1 MASSIRRGRGAWTRLLSLLLLAAWEVGSGQLRYSVPEEAKHGTFVGRIAQDLGLELEELV 60
MASSIRRGRGAWTRLLSLLLLAAWEVGSGQLRYSVPEEAKHGTFVGRIAQDLGLELEELV
Sbjct: 1 MASSIRRGRGAWTRLLSLLLLAAWEVGSGQLRYSVPEEAKHGTFVGRIAQDLGLELEELV 60
Query: 61 PRLFRVASKRHGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHVEVIVDRPLQVFHVE 120
PRLFRVASKRHGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHVEVIVDRPLQVFHVE
Sbjct: 61 PRLFRVASKRHGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHVEVIVDRPLQVFHVE 120
Query: 121 VEVKDINDNPPIFPMTVKTIRFPESRLLDSRFPLEGASDADIGVNALLSYKLSSSEFFFL 180
VEVKDINDNPPIFPMTVKTIRFPESRLLDSRFPLEGASDADIGVNALLSYKLSSSEFFFL
Sbjct: 121 VEVKDINDNPPIFPMTVKTIRFPESRLLDSRFPLEGASDADIGVNALLSYKLSSSEFFFL 180
Query: 181 DIQANDELSESLSLVLGKSLDREETAEVNLLLVATDGGKPELTGTVQILIKVLDVNDNEP 240
DIQANDELSESLSLVLGKSLDREETAEVNLLLVATDGGKPELTGTVQILIKVLDVNDNEP
Sbjct: 181 DIQANDELSESLSLVLGKSLDREETAEVNLLLVATDGGKPELTGTVQILIKVLDVNDNEP 240
Query: 241 TFAQSVYKVKLLENTANGTLVVKLNASDADEGPNSEIVYSLGSDVSSTIQTKFTIDPISG 300
TFAQSVYKVKLLENTANGTLVVKLNASDADEGPNSEIVYSLGSDVSSTIQTKFTIDPISG
Sbjct: 241 TFAQSVYKVKLLENTANGTLVVKLNASDADEGPNSEIVYSLGSDVSSTIQTKFTIDPISG 300
Query: 301 EIRTKGKLDYEEAKSYEIQVTATDKGTPSMSGHCKISLKLVDINDNTPEVSITSLSLPIS 360
EIRTKGKLDYEEAKSYEIQVTATDKGTPSMSGHCKISLKLVDINDNTPEVSITSLSLPIS
Sbjct: 301 EIRTKGKLDYEEAKSYEIQVTATDKGTPSMSGHCKISLKLVDINDNTPEVSITSLSLPIS 360
Query: 361 ENASLGTVIALITVSDRDSGTNGHVTCSLTPHVPFKLVSTFKNYYSLVLDSALDRESVSA 420
ENASLGTVIALITVSDRDSGTNGHVTCSLTPHVPFKLVSTFKNYYSLVLDSALDRESVSA
Sbjct: 361 ENASLGTVIALITVSDRDSGTNGHVTCSLTPHVPFKLVSTFKNYYSLVLDSALDRESVSA 420
Query: 421 YELVVTARDGGSPSLWATTSVSIEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAW 480
YELVVTARDGGSPSLWATTSVSIEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAW
Sbjct: 421 YELVVTARDGGSPSLWATTSVSIEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAW 480
Query: 481 DADAQENALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEEVELLQFQVSARDA 540
DADAQENALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEEVELLQFQVSARDA
Sbjct: 481 DADAQENALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEEVELLQFQVSARDA 540
Query: 541 GVPPLGSNVTLQVFVLDENDNAPALLAPRAGTAAGAVSELVPWSVGAGHVVAKVRAVDAD 600
GVPPLGSNVTLQVFVLDENDNAPALLAPRAGTAAGAVSELVPWSVGAGHVVAKVRAVDAD
Sbjct: 541 GVPPLGSNVTLQVFVLDENDNAPALLAPRAGTAAGAVSELVPWSVGAGHVVAKVRAVDAD 600
Query: 601 SGYNAWLSYELQLGTGSARIPFRVGLYTGEISTTRALDEADSPRHRLLVLVKDHGEPALT 660
SGYNAWLSYELQLGTGSARIPFRVGLYTGEISTTRALDEADSPRHRLLVLVKDHGEPALT
Sbjct: 601 SGYNAWLSYELQLGTGSARIPFRVGLYTGEISTTRALDEADSPRHRLLVLVKDHGEPALT 660
Query: 661 ATATVLVSLVESGQAPKASSRAWVGAAGSEATLVDVNVYLIIAICAVSSLLVLTVLLYTA 720
ATATVLVSLVESGQAPKASSRAWVGAAGSEATLVDVNVYLIIAICAVSSLLVLTVLLYTA
Sbjct: 661 ATATVLVSLVESGQAPKASSRAWVGAAGSEATLVDVNVYLIIAICAVSSLLVLTVLLYTA 720
Query: 721 LRCSVPPTEGARAPGKPTLVCSSAVGSWSYSQQRRQRVCSGEDPPKTDLMAFSPSLSQGP 780
LRCSVPPTEGARAPGKPTLVCSSAVGSWSYSQQRRQRVCSGEDPPKTDLMAFSPSLSQGP
Sbjct: 721 LRCSVPPTEGARAPGKPTLVCSSAVGSWSYSQQRRQRVCSGEDPPKTDLMAFSPSLSQGP 780
Query: 781 DSAEEKQLSESEYVGK 796
DSAEEKQLSESEYVGK
Sbjct: 781 DSAEEKQLSESEYVGK 796
>gi|9256588 protocadherin alpha 4 isoform 1 precursor [Homo sapiens]
Length = 947
Score = 1548 bits (4008), Expect = 0.0
Identities = 783/934 (83%), Positives = 837/934 (89%), Gaps = 1/934 (0%)
Query: 15 LLSLLLLAAWEVGSGQLRYSVPEEAKHGTFVGRIAQDLGLELEELVPRLFRVASKRHGDL 74
LL LLLLAAWE G+GQL YSV EEAKHGTFVGRIAQDLGLEL ELVPRLFRVASK G L
Sbjct: 15 LLLLLLLAAWEAGNGQLHYSVSEEAKHGTFVGRIAQDLGLELAELVPRLFRVASKGRGGL 74
Query: 75 LEVNLQNGILFVNSRIDREELCGRSAECSIHVEVIVDRPLQVFHVEVEVKDINDNPPIFP 134
LEVNLQNGILFVNSRIDREELC RSAECSIH+EVIVDRPLQVFHV+VEV+DINDNPP+FP
Sbjct: 75 LEVNLQNGILFVNSRIDREELCRRSAECSIHLEVIVDRPLQVFHVDVEVRDINDNPPVFP 134
Query: 135 MTVKTIRFPESRLLDSRFPLEGASDADIGVNALLSYKLSSSEFFFLDIQANDELSESLSL 194
T K + ESR LDSRFPLEGASDADIG NALL+Y+LS +E+F L+ +DEL + L L
Sbjct: 135 ATQKNLSIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYFSLEKPPDDELVKGLGL 194
Query: 195 VLGKSLDREETAEVNLLLVATDGGKPELTGTVQILIKVLDVNDNEPTFAQSVYKVKLLEN 254
+L KSLDREE E+ L+L ATDGGKPELTGTVQ+LI VLD NDN P F +++YKV+LLEN
Sbjct: 195 ILRKSLDREEAPEIFLVLTATDGGKPELTGTVQLLITVLDANDNAPAFDRTIYKVRLLEN 254
Query: 255 TANGTLVVKLNASDADEGPNSEIVYSLGSDVSSTIQTKFTIDPISGEIRTKGKLDYEEAK 314
NGTLV+KLNASD DEG N +IVYS +D+S +++KF IDPI+G+I KG +D+EE+K
Sbjct: 255 VPNGTLVIKLNASDLDEGLNGDIVYSFSNDISPNVKSKFHIDPITGQIIVKGYIDFEESK 314
Query: 315 SYEIQVTATDKGTPSMSGHCKISLKLVDINDNTPEVSITSLSLPISENASLGTVIALITV 374
SYEI V DKG +SGHC++ +++ D NDN P++ SLSLPI E+A LGTVIALI+V
Sbjct: 315 SYEIIVEGIDKGQLPLSGHCRVIVEVEDNNDNVPDLEFKSLSLPIREDAPLGTVIALISV 374
Query: 375 SDRDSGTNGHVTCSLTPHVPFKLVSTFKNYYSLVLDSALDRESVSAYELVVTARDGGSPS 434
SD+D G NG VTCSLT HVPFKLVSTFKNYYSLVLDSALDRESVSAYELVVTARDGGSPS
Sbjct: 375 SDKDMGVNGLVTCSLTSHVPFKLVSTFKNYYSLVLDSALDRESVSAYELVVTARDGGSPS 434
Query: 435 LWATTSVSIEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAWDADAQENALVSYSL 494
LWAT SVS+EVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAWDADAQENALVSYSL
Sbjct: 435 LWATASVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAWDADAQENALVSYSL 494
Query: 495 VERRVGERALSSYVSVHAESGKVYALQPLDHEEVELLQFQVSARDAGVPPLGSNVTLQVF 554
VERRVGERALSSYVSVHAESGKVYALQPLDHEE+ELLQFQV+ARDAGVPPLGSNVTLQVF
Sbjct: 495 VERRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVTARDAGVPPLGSNVTLQVF 554
Query: 555 VLDENDNAPALLAPRAGTAAGAVSELVPWSVGAGHVVAKVRAVDADSGYNAWLSYELQLG 614
VLDENDNAPALLAPRAG GAVSELVPWSVG GHVVAKVRAVDADSGYNAWLSYELQ G
Sbjct: 555 VLDENDNAPALLAPRAGGTGGAVSELVPWSVGVGHVVAKVRAVDADSGYNAWLSYELQPG 614
Query: 615 TGSARIPFRVGLYTGEISTTRALDEADSPRHRLLVLVKDHGEPALTATATVLVSLVESGQ 674
TG ARIPFRVGLYTGEISTTRALDE D+PRHRLLVLVKDHGEPALTATATVLVSLVESGQ
Sbjct: 615 TGGARIPFRVGLYTGEISTTRALDETDAPRHRLLVLVKDHGEPALTATATVLVSLVESGQ 674
Query: 675 APKASSRAWVGAAGSEATLVDVNVYLIIAICAVSSLLVLTVLLYTALRCSVPPTEGARAP 734
APKASSRA VGA G +A LVDVNVYLIIAICAVSSLLVLT+LLYTALRCS PTEGA AP
Sbjct: 675 APKASSRALVGAVGPDAALVDVNVYLIIAICAVSSLLVLTLLLYTALRCSALPTEGACAP 734
Query: 735 GKPTLVCSSAVGSWSYSQQRRQRVCSGEDPPKTDLMAFSPSLSQGPDSAEEKQLSESEYV 794
GKPTLVCSSAVGSWSYSQQRR RVCSGE PPKTDLMAFSPSL D ++ Q +E +
Sbjct: 735 GKPTLVCSSAVGSWSYSQQRRPRVCSGEGPPKTDLMAFSPSLPDSRDREDQLQTTEESF- 793
Query: 795 GKPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPTVSSATPEPEAGEVSP 854
KPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPTVSSATPEPEAGEVSP
Sbjct: 794 AKPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPTVSSATPEPEAGEVSP 853
Query: 855 PVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIRQEPTNSQIDKSDFITF 914
PVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIRQEPTNSQIDKSDFITF
Sbjct: 854 PVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIRQEPTNSQIDKSDFITF 913
Query: 915 GKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ 948
GKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
Sbjct: 914 GKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ 947
>gi|9256582 protocadherin alpha 1 isoform 1 precursor [Homo sapiens]
Length = 950
Score = 1543 bits (3995), Expect = 0.0
Identities = 791/950 (83%), Positives = 841/950 (88%), Gaps = 2/950 (0%)
Query: 1 MASSIRRGRGAWTRLLSLLLLAAWEVGSGQLRYSVPEEAKHGTFVGRIAQDLGLELEELV 60
M S R G GA LL LLLLAAWEVGSGQL YS+PEEAKHGTFVGR+AQDLGLEL ELV
Sbjct: 1 MVFSRRGGLGARDLLLWLLLLAAWEVGSGQLHYSIPEEAKHGTFVGRVAQDLGLELAELV 60
Query: 61 PRLFRVASKRHGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHVEVIVDRPLQVFHVE 120
PRLFRVASK H DLLEVNLQNGILFVNSRIDREELC SAECSIH+E+I DRPLQVFHVE
Sbjct: 61 PRLFRVASKTHRDLLEVNLQNGILFVNSRIDREELCQWSAECSIHLELIADRPLQVFHVE 120
Query: 121 VEVKDINDNPPIFPMTVKTIRFPESRLLDSRFPLEGASDADIGVNALLSYKLSSSEFFFL 180
V+VKDINDNPP+F + I PESRLL+SRFP+EGA+DADIG NALL+Y LS S++F L
Sbjct: 121 VKVKDINDNPPVFRGREQIIFIPESRLLNSRFPIEGAADADIGANALLTYTLSPSDYFSL 180
Query: 181 DIQANDELSESLSLVLGKSLDREETAEVNLLLVATDGGKPELTGTVQILIKVLDVNDNEP 240
D++A+DELS+SL L L K LDREET E++LLL ATDGGKPEL GTV++LI VLDVNDN P
Sbjct: 181 DVEASDELSKSLWLELRKYLDREETPELHLLLTATDGGKPELQGTVELLITVLDVNDNAP 240
Query: 241 TFAQSVYKVKLLENTANGTLVVKLNASDADEGPNSEIVYSLGSDVSSTIQTKFTIDPISG 300
F Q+VY+V LLE TANGTLV LNASDADEG N E+V+S S +S IQ KF +D SG
Sbjct: 241 LFDQAVYRVHLLETTANGTLVTTLNASDADEGVNGEVVFSFDSGISRDIQEKFKVDSSSG 300
Query: 301 EIRTKGKLDYEEAKSYEIQVTATDKGTPSMSGHCKISLKLVDINDNTPEVSITSLSLPIS 360
EIR KLDYEE KSYEIQV A DKG+P MS HCK+ +K++D+NDN PE+++TSL LPI
Sbjct: 301 EIRLIDKLDYEETKSYEIQVKAVDKGSPPMSNHCKVLVKVLDVNDNAPELAVTSLYLPIR 360
Query: 361 ENASLGTVIALITVSDRDSGTNGHVTCSLTPHVPFKLVSTFKNYYSLVLDSALDRESVSA 420
E+A L TVIALITVSDRDSG NG VTCSL PHVPFKLVSTFKNYYSLVLDSALDRES+S
Sbjct: 361 EDAPLSTVIALITVSDRDSGANGQVTCSLMPHVPFKLVSTFKNYYSLVLDSALDRESLSV 420
Query: 421 YELVVTARDGGSPSLWATTSVSIEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAW 480
YELVVTARDGGSPSLWAT VS+EVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSA
Sbjct: 421 YELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAR 480
Query: 481 DADAQENALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEEVELLQFQVSARDA 540
DADAQENALVSYSLVERRVGERALS+YVSVHAESGKVYALQPLDHEE+ELLQFQVSARDA
Sbjct: 481 DADAQENALVSYSLVERRVGERALSNYVSVHAESGKVYALQPLDHEELELLQFQVSARDA 540
Query: 541 GVPPLGSNVTLQVFVLDENDNAPALLAPRAGTAAGAVSELVPWSVGAGHVVAKVRAVDAD 600
GVPPLGSNVTLQVFVLDENDNAPALLAPR G GAVSELVP VGAGHVVAKVRAVDAD
Sbjct: 541 GVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTIGAVSELVPRLVGAGHVVAKVRAVDAD 600
Query: 601 SGYNAWLSYELQLGTGSARIPFRVGLYTGEISTTRALDEADSPRHRLLVLVKDHGEPALT 660
SGYNAWLSYELQ G ARIPFRVGLYTGEISTTR LDEAD R+RLLVLVKDHGEPALT
Sbjct: 601 SGYNAWLSYELQPAAGGARIPFRVGLYTGEISTTRVLDEADLSRYRLLVLVKDHGEPALT 660
Query: 661 ATATVLVSLVESGQAPKASSRAWVGAAGSEATLVDVNVYLIIAICAVSSLLVLTVLLYTA 720
ATATVLVSLVESGQAPKASSRA VG AG EA LVDVNVYLIIAICAVSSLLVLT+LLYTA
Sbjct: 661 ATATVLVSLVESGQAPKASSRASVGVAGPEAALVDVNVYLIIAICAVSSLLVLTLLLYTA 720
Query: 721 LRCSVPPTEGARAPGKPTLVCSSAVGSWSYSQQRRQRVCSGEDPPKTDLMAFSPSLSQGP 780
LRCSVPPTEGA PGKPTLVCSSA+GSWS SQQRRQRVCS E PPKTDLMAFSP LS
Sbjct: 721 LRCSVPPTEGAYVPGKPTLVCSSALGSWSNSQQRRQRVCSSEGPPKTDLMAFSPGLSPSL 780
Query: 781 DSAEEKQLSES--EYVGKPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWP 838
+++E + E+ + G PRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWP
Sbjct: 781 NTSERNEQPEANLDLSGNPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWP 840
Query: 839 TVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIR 898
TVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIR
Sbjct: 841 TVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIR 900
Query: 899 QEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ 948
QEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
Sbjct: 901 QEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ 950
>gi|9256586 protocadherin alpha 3 isoform 1 precursor [Homo sapiens]
Length = 950
Score = 1540 bits (3986), Expect = 0.0
Identities = 788/950 (82%), Positives = 841/950 (88%), Gaps = 2/950 (0%)
Query: 1 MASSIRRGRGAWTRLLSLLLLAAWEVGSGQLRYSVPEEAKHGTFVGRIAQDLGLELEELV 60
M S R GA LLSLLLLAA EVGSGQL YSV EEAKHGTFVGRIAQDLGLEL ELV
Sbjct: 1 MLFSWREDPGAQCLLLSLLLLAASEVGSGQLHYSVSEEAKHGTFVGRIAQDLGLELAELV 60
Query: 61 PRLFRVASKRHGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHVEVIVDRPLQVFHVE 120
PRLFRVASKRHGDLLEVNLQNGILFVNSRIDREELCGRSAECSIH+EVIVDRPLQVFHVE
Sbjct: 61 PRLFRVASKRHGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVE 120
Query: 121 VEVKDINDNPPIFPMTVKTIRFPESRLLDSRFPLEGASDADIGVNALLSYKLSSSEFFFL 180
VEVKDINDN P+FPM VK + ESR SRF LEGASDADIG N+LL+Y L S+E+F L
Sbjct: 121 VEVKDINDNAPVFPMAVKNLFISESRQPGSRFSLEGASDADIGTNSLLTYSLDSTEYFTL 180
Query: 181 DIQANDELSESLSLVLGKSLDREETAEVNLLLVATDGGKPELTGTVQILIKVLDVNDNEP 240
D++ NDE +SL LVL K+L+RE+T + LL+ A DGGKPELTGT Q+ I VLDVNDN P
Sbjct: 181 DVKRNDEEIKSLGLVLKKNLNREDTPKHYLLITAIDGGKPELTGTTQLKITVLDVNDNAP 240
Query: 241 TFAQSVYKVKLLENTANGTLVVKLNASDADEGPNSEIVYSLGSDVSSTIQTKFTIDPISG 300
F +++YKV+LLEN NGTLVV +NA+D DEG N +I YS +D+S+ I +KF +DP++G
Sbjct: 241 AFERTIYKVRLLENAPNGTLVVTVNATDLDEGVNKDIAYSFNTDMSADILSKFHLDPVNG 300
Query: 301 EIRTKGKLDYEEAKSYEIQVTATDKGTPSMSGHCKISLKLVDINDNTPEVSITSLSLPIS 360
+I KG +D+EE+KSYEIQV ATDKG P MS HC + L++VDINDN PE+ I SLSLP+
Sbjct: 301 QISVKGNIDFEESKSYEIQVEATDKGNPPMSDHCTVLLEIVDINDNVPELVIQSLSLPVL 360
Query: 361 ENASLGTVIALITVSDRDSGTNGHVTCSLTPHVPFKLVSTFKNYYSLVLDSALDRESVSA 420
E++ L TVIALI+VSDRDSG NG VTCSLTPHVPFKLVSTFKNYYSLVLDS LDRESVSA
Sbjct: 361 EDSPLSTVIALISVSDRDSGVNGQVTCSLTPHVPFKLVSTFKNYYSLVLDSPLDRESVSA 420
Query: 421 YELVVTARDGGSPSLWATTSVSIEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAW 480
YELVVTARDGGSPSLWAT SVS+EVADVNDNAPAF+Q EYTVFVKENNPPGCHIFTVSA
Sbjct: 421 YELVVTARDGGSPSLWATASVSVEVADVNDNAPAFSQSEYTVFVKENNPPGCHIFTVSAR 480
Query: 481 DADAQENALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEEVELLQFQVSARDA 540
DADAQENALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEE+ELLQFQVSARDA
Sbjct: 481 DADAQENALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDA 540
Query: 541 GVPPLGSNVTLQVFVLDENDNAPALLAPRAGTAAGAVSELVPWSVGAGHVVAKVRAVDAD 600
GVPPLGSNVTLQVFVLDENDNAPALL PR G GAVSELVP SVGAGHVVAKVRAVDAD
Sbjct: 541 GVPPLGSNVTLQVFVLDENDNAPALLMPRVGGIGGAVSELVPRSVGAGHVVAKVRAVDAD 600
Query: 601 SGYNAWLSYELQLGTGSARIPFRVGLYTGEISTTRALDEADSPRHRLLVLVKDHGEPALT 660
SGYNAWLSYELQ GTG ARIPFRVGLYTGEISTTRALDE D+PRHRLLVLVKDHGEP+LT
Sbjct: 601 SGYNAWLSYELQPGTGGARIPFRVGLYTGEISTTRALDEVDAPRHRLLVLVKDHGEPSLT 660
Query: 661 ATATVLVSLVESGQAPKASSRAWVGAAGSEATLVDVNVYLIIAICAVSSLLVLTVLLYTA 720
ATATVLVSLVESGQAPKASS+A GA G EA LVDVNVYLI+AICAVSSLLVLT+LLYTA
Sbjct: 661 ATATVLVSLVESGQAPKASSQASAGATGPEAALVDVNVYLIVAICAVSSLLVLTLLLYTA 720
Query: 721 LRCSVPPTEGARAPGKPTLVCSSAVGSWSYSQQRRQRVCSGEDPPKTDLMAFSPSLSQGP 780
LRCS PPTEG PGKPTLVCSSAVGSWSYSQQR+QRVCSGE PKTDLMAFSPSL P
Sbjct: 721 LRCSAPPTEGDCGPGKPTLVCSSAVGSWSYSQQRQQRVCSGEGLPKTDLMAFSPSLPPCP 780
Query: 781 DS--AEEKQLSESEYVGKPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWP 838
S EEKQ + + KPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWP
Sbjct: 781 ISRDREEKQDVDVDLSAKPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWP 840
Query: 839 TVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIR 898
TVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIR
Sbjct: 841 TVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIR 900
Query: 899 QEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ 948
QEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
Sbjct: 901 QEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ 950
>gi|9256580 protocadherin alpha 13 isoform 1 precursor [Homo
sapiens]
Length = 950
Score = 1518 bits (3931), Expect = 0.0
Identities = 779/950 (82%), Positives = 837/950 (88%), Gaps = 2/950 (0%)
Query: 1 MASSIRRGRGAWTRLLSLLLLAAWEVGSGQLRYSVPEEAKHGTFVGRIAQDLGLELEELV 60
M SS + G LL LL+LAAWE GSGQL YSVPEEAKHGTFVGRIAQDLGLEL ELV
Sbjct: 1 MLSSWQGGPRPRQLLLWLLILAAWETGSGQLHYSVPEEAKHGTFVGRIAQDLGLELAELV 60
Query: 61 PRLFRVASKRHGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHVEVIVDRPLQVFHVE 120
PRLFRVASKRHGDLLEVNLQNGILFVNSRIDREELCGRSAECSIH+EVIVDRPLQVFHVE
Sbjct: 61 PRLFRVASKRHGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVE 120
Query: 121 VEVKDINDNPPIFPMTVKTIRFPESRLLDSRFPLEGASDADIGVNALLSYKLSSSEFFFL 180
V+V+DINDNPPIFP + K I ESR ++RFPL+GASDADIGVN+ L+Y+L +++F L
Sbjct: 121 VKVRDINDNPPIFPESKKRIIIAESRPPETRFPLDGASDADIGVNSALTYRLDPNDYFTL 180
Query: 181 DIQANDELSESLSLVLGKSLDREETAEVNLLLVATDGGKPELTGTVQILIKVLDVNDNEP 240
D Q + E SLSLVL K+LDREE E +LLL A+DGGKPELTGTVQ+LI +LDVNDN P
Sbjct: 181 DAQNSLEQMSSLSLVLRKTLDREEIQEHSLLLTASDGGKPELTGTVQLLITILDVNDNAP 240
Query: 241 TFAQSVYKVKLLENTANGTLVVKLNASDADEGPNSEIVYSLGSDVSSTIQTKFTIDPISG 300
F QSVYKV +LEN NGTLV+KLNA+D D+G N +IVYS V + FTI+P +G
Sbjct: 241 EFYQSVYKVTVLENAFNGTLVIKLNATDPDDGTNGDIVYSFRRPVWPAVVYAFTINPNNG 300
Query: 301 EIRTKGKLDYEEAKSYEIQVTATDKGTPSMSGHCKISLKLVDINDNTPEVSITSLSLPIS 360
EIRTKGKLD+EE K YEI V A DKG M+GHC + ++++D+NDN PEV+ITSLSLPI
Sbjct: 301 EIRTKGKLDFEEKKLYEISVEAVDKGNIPMAGHCTLLVEVLDVNDNAPEVTITSLSLPIR 360
Query: 361 ENASLGTVIALITVSDRDSGTNGHVTCSLTPHVPFKLVSTFKNYYSLVLDSALDRESVSA 420
E+ +IALI+VSDRDSG+NG VTC+LTPHVPFKLVST+KNYYSLVLDSALDRESVSA
Sbjct: 361 EDTQPSAIIALISVSDRDSGSNGQVTCTLTPHVPFKLVSTYKNYYSLVLDSALDRESVSA 420
Query: 421 YELVVTARDGGSPSLWATTSVSIEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAW 480
YELVVTARDGGSPSLWAT SVS+ VADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSA
Sbjct: 421 YELVVTARDGGSPSLWATASVSVGVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAQ 480
Query: 481 DADAQENALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEEVELLQFQVSARDA 540
DADAQENALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEE+ELLQFQVSARD+
Sbjct: 481 DADAQENALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDS 540
Query: 541 GVPPLGSNVTLQVFVLDENDNAPALLAPRAGTAAGAVSELVPWSVGAGHVVAKVRAVDAD 600
GVPPLGSNVTLQVFVLDENDNAPALL P AG+A G VSEL+P SVGAGHVVAKVRAVDAD
Sbjct: 541 GVPPLGSNVTLQVFVLDENDNAPALLTPGAGSAGGTVSELMPRSVGAGHVVAKVRAVDAD 600
Query: 601 SGYNAWLSYELQLGTGSARIPFRVGLYTGEISTTRALDEADSPRHRLLVLVKDHGEPALT 660
SGYNAWLSYELQL ARIPFRVGLYTGEISTTR LDE D+P HRLLVLVKDHGEPALT
Sbjct: 601 SGYNAWLSYELQLAAVGARIPFRVGLYTGEISTTRPLDEVDAPHHRLLVLVKDHGEPALT 660
Query: 661 ATATVLVSLVESGQAPKASSRAWVGAAGSEATLVDVNVYLIIAICAVSSLLVLTVLLYTA 720
ATATVL+SLVESGQAP+ASSRA GA G EA LVDVNVYLIIAICAVSSLLVLT+LLYTA
Sbjct: 661 ATATVLLSLVESGQAPQASSRASAGAVGPEAALVDVNVYLIIAICAVSSLLVLTLLLYTA 720
Query: 721 LRCSVPPTEGARAPGKPTLVCSSAVGSWSYSQQRRQRVCSGEDPPKTDLMAFSPSLSQGP 780
LRCS PPTEGA APGKPTLVCSSA GSWSYSQQRR RVCSGE P KTDLMAFSPSL
Sbjct: 721 LRCSAPPTEGACAPGKPTLVCSSAAGSWSYSQQRRPRVCSGEGPHKTDLMAFSPSLPPCL 780
Query: 781 DSAE--EKQLSESEYVGKPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWP 838
SAE ++ +SE + +PRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWP
Sbjct: 781 GSAEGTGQREEDSECLKEPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWP 840
Query: 839 TVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIR 898
TVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIR
Sbjct: 841 TVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIR 900
Query: 899 QEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ 948
QEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
Sbjct: 901 QEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ 950
>gi|9256592 protocadherin alpha 6 isoform 1 precursor [Homo sapiens]
Length = 950
Score = 1509 bits (3908), Expect = 0.0
Identities = 768/937 (81%), Positives = 830/937 (88%), Gaps = 4/937 (0%)
Query: 15 LLSLLLLAAWEVGSGQLRYSVPEEAKHGTFVGRIAQDLGLELEELVPRLFRVASKRHGDL 74
LL LLLLAAW+VGSGQL YSVPEEAKHGTFVGRIAQDLGLEL ELVPRLFR+ASK DL
Sbjct: 15 LLPLLLLAAWKVGSGQLHYSVPEEAKHGTFVGRIAQDLGLELAELVPRLFRMASKDREDL 74
Query: 75 LEVNLQNGILFVNSRIDREELCGRSAECSIHVEVIVDRPLQVFHVEVEVKDINDNPPIFP 134
LEVNLQNGILFVNSRIDREELCGRSAECSIH+EVIVDRPLQVFHV+VEV+DINDNPP+FP
Sbjct: 75 LEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVDVEVRDINDNPPLFP 134
Query: 135 MTVKTIRFPESRLLDSRFPLEGASDADIGVNALLSYKLSSSEFFFLDIQANDELSESLSL 194
+ + + ESRL DS FPLEGASDAD+G N++L+YKLSSSE+F LD++ N + ++ + L
Sbjct: 135 VEEQRVLIYESRLPDSVFPLEGASDADVGSNSILTYKLSSSEYFGLDVKINSDDNKQIGL 194
Query: 195 VLGKSLDREETAEVNLLLVATDGGKPELTGTVQILIKVLDVNDNEPTFAQSVYKVKLLEN 254
+L KSLDREE NL L ATDGGKPELTGTVQ+L+ VLDVNDN PTF QS Y+V++ EN
Sbjct: 195 LLKKSLDREEAPAHNLFLTATDGGKPELTGTVQLLVTVLDVNDNAPTFEQSEYEVRIFEN 254
Query: 255 TANGTLVVKLNASDADEGPNSEIVYSLGSDVSSTIQTKFTIDPISGEIRTKGKLDYEEAK 314
NGT V++LNASD DEG N I YS S V++ + F+ID +GEI +G LD+E+
Sbjct: 255 ADNGTTVIRLNASDRDEGANGAISYSFNSLVAAMVIDHFSIDRNTGEIVIRGNLDFEQEN 314
Query: 315 SYEIQVTATDKGTPSMSGHCKISLKLVDINDNTPEVSITSLSLPISENASLGTVIALITV 374
Y+I + ATDKG P M+GHC + ++++D NDN PE+++TSLSLP+ E+A GTVIALI+V
Sbjct: 315 LYKILIDATDKGHPPMAGHCTVLVRILDKNDNVPEIALTSLSLPVREDAQFGTVIALISV 374
Query: 375 SDRDSGTNGHVTCSLTPHVPFKLVSTFKNYYSLVLDSALDRESVSAYELVVTARDGGSPS 434
+D DSG NG V CSLTPHVPFKLVSTFKNYYSLVLDSALDRESVSAYELVVTARDGGSPS
Sbjct: 375 NDLDSGANGQVNCSLTPHVPFKLVSTFKNYYSLVLDSALDRESVSAYELVVTARDGGSPS 434
Query: 435 LWATTSVSIEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAWDADAQENALVSYSL 494
LWAT S+S+EVAD+NDNAPAFAQPEYTVFVKENNPPGCHIFTVSA DADAQENALVSYSL
Sbjct: 435 LWATASLSVEVADMNDNAPAFAQPEYTVFVKENNPPGCHIFTVSARDADAQENALVSYSL 494
Query: 495 VERRVGERALSSYVSVHAESGKVYALQPLDHEEVELLQFQVSARDAGVPPLGSNVTLQVF 554
VERRVGERALSSY+SVHAESGKVYALQPLDHEE+ELLQFQVSARDAGVPPLGSNVTLQVF
Sbjct: 495 VERRVGERALSSYISVHAESGKVYALQPLDHEELELLQFQVSARDAGVPPLGSNVTLQVF 554
Query: 555 VLDENDNAPALLAPRAGTAAGAVSELVPWSVGAGHVVAKVRAVDADSGYNAWLSYELQLG 614
VLDENDNAPALLAPR G GAVSELVP S+GAG VVAKVRAVDADSGYNAWLSYELQ
Sbjct: 555 VLDENDNAPALLAPRVGGTGGAVSELVPRSLGAGQVVAKVRAVDADSGYNAWLSYELQPP 614
Query: 615 TGSARIPFRVGLYTGEISTTRALDEADSPRHRLLVLVKDHGEPALTATATVLVSLVESGQ 674
SAR PFRVGLYTGEISTTR LDEADSPRHRLLVLVKDHGEPALTATATVLVSLVESGQ
Sbjct: 615 ASSARFPFRVGLYTGEISTTRVLDEADSPRHRLLVLVKDHGEPALTATATVLVSLVESGQ 674
Query: 675 APKASSRAWVGAAGSEATLVDVNVYLIIAICAVSSLLVLTVLLYTALRCSVPPTEGARAP 734
APKASSRA VGAAG EA LVDVNVYLIIAICAVSSLLVLT+LLYTALRCS PPTEGA
Sbjct: 675 APKASSRASVGAAGPEAALVDVNVYLIIAICAVSSLLVLTLLLYTALRCSAPPTEGACTA 734
Query: 735 GKPTLVCSSAVGSWSYSQQRRQRVCSGEDPPKTDLMAFSPSLSQGP---DSAEEKQLSES 791
KPTLVCSSAVGSWSYSQQRRQRVCSGE PPK DLMAFSPSLS P AE + L+E
Sbjct: 735 DKPTLVCSSAVGSWSYSQQRRQRVCSGEGPPKMDLMAFSPSLSPCPIMMGKAENQDLNE- 793
Query: 792 EYVGKPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPTVSSATPEPEAGE 851
++ KPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPTVSSATPEPEAGE
Sbjct: 794 DHDAKPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPTVSSATPEPEAGE 853
Query: 852 VSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIRQEPTNSQIDKSDF 911
VSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIRQEPTNSQIDKSDF
Sbjct: 854 VSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIRQEPTNSQIDKSDF 913
Query: 912 ITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ 948
ITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
Sbjct: 914 ITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ 950
>gi|9256576 protocadherin alpha 11 isoform 1 precursor [Homo
sapiens]
Length = 949
Score = 1503 bits (3891), Expect = 0.0
Identities = 771/945 (81%), Positives = 831/945 (87%), Gaps = 3/945 (0%)
Query: 6 RRGRGAWTRLLSLLLLAAWEVGSGQLRYSVPEEAKHGTFVGRIAQDLGLELEELVPRLFR 65
RRG G L LLLL WEVGSGQL YSV EEAKHGTFVGRIAQDLGLEL ELV RLFR
Sbjct: 6 RRGLGTPRLQLWLLLLEFWEVGSGQLHYSVSEEAKHGTFVGRIAQDLGLELAELVQRLFR 65
Query: 66 VASKRHGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHVEVIVDRPLQVFHVEVEVKD 125
VASK HGDLLEVNLQNGILFVNSRIDREELCG+SAECSIH+EVIVDRPLQVFHV VEVKD
Sbjct: 66 VASKTHGDLLEVNLQNGILFVNSRIDREELCGQSAECSIHLEVIVDRPLQVFHVNVEVKD 125
Query: 126 INDNPPIFPMTVKTIRFPESRLLDSRFPLEGASDADIGVNALLSYKLSSSEFFFLDIQAN 185
INDNPP+F + + + ES+ DSRFPLEGASDADI NALL+Y+LS +E+F LD N
Sbjct: 126 INDNPPVFSLREQKLLIAESKQSDSRFPLEGASDADIEENALLTYRLSKNEYFSLDSPTN 185
Query: 186 DELSESLSLVLGKSLDREETAEVNLLLVATDGGKPELTGTVQILIKVLDVNDNEPTFAQS 245
+ + LSL+L KSLDRE+T E+NLLL ATDGGKPELTGTV++L++VLDVNDN+P F +S
Sbjct: 186 GKQIKRLSLILKKSLDREKTPELNLLLTATDGGKPELTGTVRLLVQVLDVNDNDPEFDKS 245
Query: 246 VYKVKLLENTANGTLVVKLNASDADEGPNSEIVYSLGSDVSSTIQTKFTIDPISGEIRTK 305
YKV L+EN A TLV+KLNA+D DEG N E+ YSL S + + FT+D +GE+R
Sbjct: 246 EYKVSLMENAAKETLVLKLNATDRDEGVNGEVTYSLMS-IKPNGRHLFTLDQNNGEVRVN 304
Query: 306 GKLDYEEAKSYEIQVTATDKGTPSMSGHCKISLKLVDINDNTPEVSITSLSLPISENASL 365
G LDYEE K Y+I+V ATDKGTP M+GHC + ++++D NDN+PEV++TSLSLP+ E+A
Sbjct: 305 GTLDYEENKFYKIEVQATDKGTPPMAGHCTVWVEILDTNDNSPEVAVTSLSLPVREDAQP 364
Query: 366 GTVIALITVSDRDSGTNGHVTCSLTPHVPFKLVSTFKNYYSLVLDSALDRESVSAYELVV 425
TVIALI+VSDRDSG NG VTCSLTPHVPFKLVSTFKNYYSLVLDSALDRE+V AYELVV
Sbjct: 365 STVIALISVSDRDSGVNGQVTCSLTPHVPFKLVSTFKNYYSLVLDSALDRENVWAYELVV 424
Query: 426 TARDGGSPSLWATTSVSIEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAWDADAQ 485
TARDGGSPSLWAT VS+EVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSA DADAQ
Sbjct: 425 TARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSARDADAQ 484
Query: 486 ENALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEEVELLQFQVSARDAGVPPL 545
ENALVSYSLVERR+G+RALSSYVSVHAESGKVYALQPLDHEE+ELLQFQVSARDAGVPPL
Sbjct: 485 ENALVSYSLVERRLGDRALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDAGVPPL 544
Query: 546 GSNVTLQVFVLDENDNAPALLAPRAGTAAGAVSELVPWSVGAGHVVAKVRAVDADSGYNA 605
SNVTLQVFVLDENDNAPALLA +AG+A GAV++LVP SVGAGHVVAKVRAVDADSGYNA
Sbjct: 545 SSNVTLQVFVLDENDNAPALLATQAGSAGGAVNKLVPRSVGAGHVVAKVRAVDADSGYNA 604
Query: 606 WLSYELQLGTGSARIPFRVGLYTGEISTTRALDEADSPRHRLLVLVKDHGEPALTATATV 665
WLSYELQ G +RIPFRVGLYTGEISTTRALDEADSPRHRLLVLVKDHGEPALTATATV
Sbjct: 605 WLSYELQPAAGGSRIPFRVGLYTGEISTTRALDEADSPRHRLLVLVKDHGEPALTATATV 664
Query: 666 LVSLVESGQAPKASSRAWVGAAGSEATLVDVNVYLIIAICAVSSLLVLTVLLYTALRCSV 725
LVSLVESGQAPKASSR GAA EA LVDVNVYLIIAIC VSSLLVLT+LLYTAL S
Sbjct: 665 LVSLVESGQAPKASSRTLAGAASPEAALVDVNVYLIIAICVVSSLLVLTLLLYTALWWSA 724
Query: 726 PPTEGARAPGKPTLVCSSAVGSWSYSQQRRQRVCSGEDPPKTDLMAFSPSLSQGPDSAEE 785
PTEGA APGKPTLVCS AVGSWSYSQQRRQRVCS E PPKTDLMAFSPSL G + EE
Sbjct: 725 TPTEGACAPGKPTLVCSRAVGSWSYSQQRRQRVCSEEGPPKTDLMAFSPSLPLGLNKEEE 784
Query: 786 KQLSE--SEYVGKPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPTVSSA 843
+ E S + G+PRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPTVSSA
Sbjct: 785 GERQEPGSNHPGQPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPTVSSA 844
Query: 844 TPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIRQEPTN 903
TPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIRQEPTN
Sbjct: 845 TPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIRQEPTN 904
Query: 904 SQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ 948
SQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
Sbjct: 905 SQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ 949
>gi|9256590 protocadherin alpha 5 isoform 1 precursor [Homo sapiens]
Length = 936
Score = 1501 bits (3886), Expect = 0.0
Identities = 768/943 (81%), Positives = 819/943 (86%), Gaps = 11/943 (1%)
Query: 6 RRGRGAWTRLLSLLLLAAWEVGSGQLRYSVPEEAKHGTFVGRIAQDLGLELEELVPRLFR 65
RRG LL LLLA W+ GSGQL YS+PEEAKHGTFVGRIAQDLGLEL ELVPRLFR
Sbjct: 5 RRGSLGSRLLLLWLLLAYWKAGSGQLHYSIPEEAKHGTFVGRIAQDLGLELAELVPRLFR 64
Query: 66 VASKRHGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHVEVIVDRPLQVFHVEVEVKD 125
VASK GDLLEVNLQNGILFVNSRIDREELC R AECSIH+EVIVDRPLQVFHVEV VKD
Sbjct: 65 VASKGRGDLLEVNLQNGILFVNSRIDREELCRRRAECSIHLEVIVDRPLQVFHVEVAVKD 124
Query: 126 INDNPPIFPMTVKTIRFPESRLLDSRFPLEGASDADIGVNALLSYKLSSSEFFFLDIQAN 185
INDNPP F + + ESR+ DSRFPLEGASD DIG NA L Y+L+ +E+F LD++ N
Sbjct: 125 INDNPPRFSRQEQRLFILESRMPDSRFPLEGASDLDIGANAQLRYRLNPNEYFDLDVKTN 184
Query: 186 DELSESLSLVLGKSLDREETAEVNLLLVATDGGKPELTGTVQILIKVLDVNDNEPTFAQS 245
+E + L LVL KSLDREET E LL++ATDGGKPELTGTVQ+LI VLD NDN P F +S
Sbjct: 185 EEETNFLELVLRKSLDREETQEHRLLVIATDGGKPELTGTVQLLINVLDANDNAPEFDKS 244
Query: 246 VYKVKLLENTANGTLVVKLNASDADEGPNSEIVYSLGSDVSSTIQTKFTIDPISGEIRTK 305
+Y V+LLEN +GTLV+KLNASDADEG N EIVY + V +++KF I+ +GEI+
Sbjct: 245 IYNVRLLENAPSGTLVIKLNASDADEGINKEIVYFFSNLVLDDVKSKFIINSNTGEIKVN 304
Query: 306 GKLDYEEAKSYEIQVTATDKGTPSMSGHCKISLKLVDINDNTPEVSITSLSLPISENASL 365
G+LDYE+ SYEI + A DK T +SGHCK+ +KL+D+NDNTPE++IT+L LP+ E+A L
Sbjct: 305 GELDYEDYNSYEINIDAMDKSTFPLSGHCKVVVKLLDVNDNTPEMAITTLFLPVKEDAPL 364
Query: 366 GTVIALITVSDRDSGTNGHVTCSLTPHVPFKLVSTFKNYYSLVLDSALDRESVSAYELVV 425
TVIALI+VSDRDSG NG VTCSL PHVPFKLVSTFKNYYSLVLDSALDRESVS YELVV
Sbjct: 365 STVIALISVSDRDSGANGQVTCSLMPHVPFKLVSTFKNYYSLVLDSALDRESVSVYELVV 424
Query: 426 TARDGGSPSLWATTSVSIEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAWDADAQ 485
TARDGGSPSLWAT SVS+EVADVNDNAPAFAQP+YTVFVKENNPPGCHIFTVSA DADAQ
Sbjct: 425 TARDGGSPSLWATASVSVEVADVNDNAPAFAQPQYTVFVKENNPPGCHIFTVSARDADAQ 484
Query: 486 ENALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEEVELLQFQVSARDAGVPPL 545
ENALVSYSLVERRVGER LSSYVSVHAESGKVYALQPLDHEEVELLQFQVSARDAGVPPL
Sbjct: 485 ENALVSYSLVERRVGERPLSSYVSVHAESGKVYALQPLDHEEVELLQFQVSARDAGVPPL 544
Query: 546 GSNVTLQVFVLDENDNAPALLAPRAGTAAGAVSELVPWSVGAGHVVAKVRAVDADSGYNA 605
GSNVTLQVFVLDENDNAPALL PR G GAVSELVP SVGAGHVVAKVRAVD DSGYNA
Sbjct: 545 GSNVTLQVFVLDENDNAPALLVPRVGGTGGAVSELVPRSVGAGHVVAKVRAVDPDSGYNA 604
Query: 606 WLSYELQLGTGSARIPFRVGLYTGEISTTRALDEADSPRHRLLVLVKDHGEPALTATATV 665
WLSYELQ GSARIPFRVGLYTGEISTTR+LDE ++PRHRLLVLVKDHGEP LTATATV
Sbjct: 605 WLSYELQPAPGSARIPFRVGLYTGEISTTRSLDETEAPRHRLLVLVKDHGEPPLTATATV 664
Query: 666 LVSLVESGQAPKASSRAWVGAAGSEATLVDVNVYLIIAICAVSSLLVLTVLLYTALRCSV 725
LVSLVESGQAPKASSRA GA G EA LVDVNVYLIIAICAVSSLLVLT+LLYTALRCS
Sbjct: 665 LVSLVESGQAPKASSRASAGAVGPEAALVDVNVYLIIAICAVSSLLVLTLLLYTALRCSA 724
Query: 726 PPTEGARAPGKPTLVCSSAVGSWSYSQQRRQRVCSGEDPPKTDLMAFSPSLSQGPDSAEE 785
PTE GKPTL+CSSAVGSWSYSQQRRQRVCSGE PPKTDLMAFSPSL QGP S +
Sbjct: 725 QPTEAVCTRGKPTLLCSSAVGSWSYSQQRRQRVCSGEAPPKTDLMAFSPSLPQGPTSTD- 783
Query: 786 KQLSESEYVGKPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPTVSSATP 845
PRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPTVSSATP
Sbjct: 784 ----------NPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPTVSSATP 833
Query: 846 EPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIRQEPTNSQ 905
EPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIRQEPTNSQ
Sbjct: 834 EPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIRQEPTNSQ 893
Query: 906 IDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ 948
IDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
Sbjct: 894 IDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ 936
>gi|9256594 protocadherin alpha 7 isoform 1 precursor [Homo sapiens]
Length = 937
Score = 1493 bits (3864), Expect = 0.0
Identities = 758/934 (81%), Positives = 821/934 (87%), Gaps = 11/934 (1%)
Query: 15 LLSLLLLAAWEVGSGQLRYSVPEEAKHGTFVGRIAQDLGLELEELVPRLFRVASKRHGDL 74
LL +++LAAWE G GQL YSVPEEAKHG FVGRIAQDLGLEL ELVPRLFR K GDL
Sbjct: 15 LLFIIILAAWEAGRGQLHYSVPEEAKHGNFVGRIAQDLGLELAELVPRLFRAVCKFRGDL 74
Query: 75 LEVNLQNGILFVNSRIDREELCGRSAECSIHVEVIVDRPLQVFHVEVEVKDINDNPPIFP 134
LEVNLQNGILFVNSRIDREELCGRSAECSIH+EVIV+RPLQVFHV+VEVKDINDNPP+FP
Sbjct: 75 LEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVERPLQVFHVDVEVKDINDNPPVFP 134
Query: 135 MTVKTIRFPESRLLDSRFPLEGASDADIGVNALLSYKLSSSEFFFLDIQANDELSESLSL 194
T + + ESR LDSRFPLEGASDADIG NALL+Y+LS +E+FFLD+ +++ + L L
Sbjct: 135 ATQRNLFIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYFFLDVPTSNQQVKPLGL 194
Query: 195 VLGKSLDREETAEVNLLLVATDGGKPELTGTVQILIKVLDVNDNEPTFAQSVYKVKLLEN 254
VL K LDREET E++LLL ATDGGKPELTGTVQ+LI VLD NDN P F +++Y VKL EN
Sbjct: 195 VLRKLLDREETPELHLLLTATDGGKPELTGTVQLLITVLDNNDNAPVFDRTLYTVKLPEN 254
Query: 255 TANGTLVVKLNASDADEGPNSEIVYSLGSDVSSTIQTKFTIDPISGEIRTKGKLDYEEAK 314
+ GTLV+ NASD DEG N +I+YS SDVS I++KF +DP+SG I G +D+EE++
Sbjct: 255 VSIGTLVIHPNASDLDEGLNGDIIYSFSSDVSPDIKSKFHMDPLSGAITVIGHMDFEESR 314
Query: 315 SYEIQVTATDKGTPSMSGHCKISLKLVDINDNTPEVSITSLSLPISENASLGTVIALITV 374
+++I V A DKG P ++GHC + +++VD+NDN P++++TSLSLPI E+A GTVI LI+V
Sbjct: 315 AHKIPVEAVDKGFPPLAGHCTVLVEVVDVNDNAPQLTLTSLSLPIPEDAQPGTVITLISV 374
Query: 375 SDRDSGTNGHVTCSLTPHVPFKLVSTFKNYYSLVLDSALDRESVSAYELVVTARDGGSPS 434
DRD G NG VTCSLTP VPFKLVSTFKNYYSLVLDSALDRESVSAYELVVTARDGGSPS
Sbjct: 375 FDRDFGVNGQVTCSLTPRVPFKLVSTFKNYYSLVLDSALDRESVSAYELVVTARDGGSPS 434
Query: 435 LWATTSVSIEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAWDADAQENALVSYSL 494
LWAT SVS+EVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSA DADAQ+NALVSYSL
Sbjct: 435 LWATASVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAGDADAQKNALVSYSL 494
Query: 495 VERRVGERALSSYVSVHAESGKVYALQPLDHEEVELLQFQVSARDAGVPPLGSNVTLQVF 554
VE RVGERALSSYVSVHAESGKVYALQPLDHEE+ELLQFQVSARDAGVPPLGSNVTLQVF
Sbjct: 495 VELRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDAGVPPLGSNVTLQVF 554
Query: 555 VLDENDNAPALLAPRAGTAAGAVSELVPWSVGAGHVVAKVRAVDADSGYNAWLSYELQLG 614
VLDENDNAPALLAPR G GAV ELVP SVGAGHVVAKVRAVDADSGYNAWLSYELQ
Sbjct: 555 VLDENDNAPALLAPRVGGTGGAVRELVPRSVGAGHVVAKVRAVDADSGYNAWLSYELQPV 614
Query: 615 TGSARIPFRVGLYTGEISTTRALDEADSPRHRLLVLVKDHGEPALTATATVLVSLVESGQ 674
A IPFRVGLYTGEISTTRALDE D+PRHRLLVLVKDHGEP+LTATATVLVSLVESGQ
Sbjct: 615 AAGASIPFRVGLYTGEISTTRALDETDAPRHRLLVLVKDHGEPSLTATATVLVSLVESGQ 674
Query: 675 APKASSRAWVGAAGSEATLVDVNVYLIIAICAVSSLLVLTVLLYTALRCSVPPTEGARAP 734
APKASSRA +G AG E LVDVNVYLIIAICAVSSLLVLT+LLYTALRCS P +EGA +
Sbjct: 675 APKASSRASLGIAGPETELVDVNVYLIIAICAVSSLLVLTLLLYTALRCSAPSSEGACSL 734
Query: 735 GKPTLVCSSAVGSWSYSQQRRQRVCSGEDPPKTDLMAFSPSLSQGPDSAEEKQLSESEYV 794
KPTLVCSSAVGSWS+SQQRRQRVCSGE PPKTDLMAFSPSL QGP S +
Sbjct: 735 VKPTLVCSSAVGSWSFSQQRRQRVCSGEGPPKTDLMAFSPSLPQGPSSTD---------- 784
Query: 795 GKPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPTVSSATPEPEAGEVSP 854
PRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPTVSSATPEPEAGEVSP
Sbjct: 785 -NPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPTVSSATPEPEAGEVSP 843
Query: 855 PVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIRQEPTNSQIDKSDFITF 914
PVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIRQEPTNSQIDKSDFITF
Sbjct: 844 PVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIRQEPTNSQIDKSDFITF 903
Query: 915 GKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ 948
GKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
Sbjct: 904 GKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ 937
>gi|9256596 protocadherin alpha 8 isoform 1 precursor [Homo sapiens]
Length = 950
Score = 1489 bits (3855), Expect = 0.0
Identities = 754/941 (80%), Positives = 821/941 (87%), Gaps = 2/941 (0%)
Query: 10 GAWTRLLSLLLLAAWEVGSGQLRYSVPEEAKHGTFVGRIAQDLGLELEELVPRLFRVASK 69
G+W LL LLLLAAW+VGSGQL YSVPEEAKHGTFVGRIAQDLGLEL ELVPRLFRVASK
Sbjct: 10 GSWRLLLLLLLLAAWKVGSGQLHYSVPEEAKHGTFVGRIAQDLGLELAELVPRLFRVASK 69
Query: 70 RHGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHVEVIVDRPLQVFHVEVEVKDINDN 129
RH DLLEV+LQNGILFVNSRIDREELCGRSAECSIH+EVIVDRPLQVFHV+VEVKD+NDN
Sbjct: 70 RHRDLLEVSLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVDVEVKDVNDN 129
Query: 130 PPIFPMTVKTIRFPESRLLDSRFPLEGASDADIGVNALLSYKLSSSEFFFLDIQANDELS 189
PP+F + + + ESR+ DSRFPLEGASDAD+G N++L+Y+LSS ++F LD+ + ++ +
Sbjct: 130 PPVFRVKDQKLFVSESRMPDSRFPLEGASDADVGANSVLTYRLSSHDYFMLDVNSKNDEN 189
Query: 190 ESLSLVLGKSLDREETAEVNLLLVATDGGKPELTGTVQILIKVLDVNDNEPTFAQSVYKV 249
+ + LVL KSLDRE+ +L L ATDGGKPELTGTVQ+L+ VLDVNDN PTF QS Y+V
Sbjct: 190 KLVELVLRKSLDREDAPAHHLFLTATDGGKPELTGTVQLLVTVLDVNDNAPTFEQSEYEV 249
Query: 250 KLLENTANGTLVVKLNASDADEGPNSEIVYSLGSDVSSTIQTKFTIDPISGEIRTKGKLD 309
++ EN NGT V+KLNASD DEG N I YS S V + + F+ID +GEI +G LD
Sbjct: 250 RIFENADNGTTVIKLNASDPDEGANGAISYSFNSLVETMVIDHFSIDRNTGEIVIRGNLD 309
Query: 310 YEEAKSYEIQVTATDKGTPSMSGHCKISLKLVDINDNTPEVSITSLSLPISENASLGTVI 369
+E+ Y+I + ATDKG P M+GHC + ++++D NDN PE+++TSLSLP+ E+A GTVI
Sbjct: 310 FEQENLYKILIDATDKGHPPMAGHCTVLVRILDKNDNVPEIALTSLSLPVREDAQFGTVI 369
Query: 370 ALITVSDRDSGTNGHVTCSLTPHVPFKLVSTFKNYYSLVLDSALDRESVSAYELVVTARD 429
ALI+V+D DSG NG VTCSL PHVPFKLVSTFKNYYSLVLDSALDRE VSAYELVVTARD
Sbjct: 370 ALISVNDLDSGANGQVTCSLMPHVPFKLVSTFKNYYSLVLDSALDRERVSAYELVVTARD 429
Query: 430 GGSPSLWATTSVSIEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAWDADAQENAL 489
GGSPSLWAT S+S+EVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSA DADAQENAL
Sbjct: 430 GGSPSLWATASLSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSARDADAQENAL 489
Query: 490 VSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEEVELLQFQVSARDAGVPPLGSNV 549
VSYSLVERRVGER+LSSY+SVH ESGKVYALQPLDHEE+ELLQFQVSARDAGVPPLGSNV
Sbjct: 490 VSYSLVERRVGERSLSSYISVHTESGKVYALQPLDHEELELLQFQVSARDAGVPPLGSNV 549
Query: 550 TLQVFVLDENDNAPALLAPRAGTAAGAVSELVPWSVGAGHVVAKVRAVDADSGYNAWLSY 609
TLQVFVLDENDNAPALL PR G GA S+LVP SVGAGHVVAKVRAVDADSGYNAWLSY
Sbjct: 550 TLQVFVLDENDNAPALLEPRVGGTGGAASKLVPRSVGAGHVVAKVRAVDADSGYNAWLSY 609
Query: 610 ELQLGTGSARIPFRVGLYTGEISTTRALDEADSPRHRLLVLVKDHGEPALTATATVLVSL 669
ELQ S RIPFRVGLYTGEISTTR LDEADSPRHRLLVLVKDHGEPALTATATVLVSL
Sbjct: 610 ELQPAASSPRIPFRVGLYTGEISTTRVLDEADSPRHRLLVLVKDHGEPALTATATVLVSL 669
Query: 670 VESGQAPKASSRAWVGAAGSEATLVDVNVYLIIAICAVSSLLVLTVLLYTALRCSVPPTE 729
VESGQAPKASSR G G EA LVDVNVYLIIAICAVSSLLVLT+LLYTALRCS PTE
Sbjct: 670 VESGQAPKASSRQSAGVLGPEAALVDVNVYLIIAICAVSSLLVLTLLLYTALRCSALPTE 729
Query: 730 GARAPGKPTLVCSSAVGSWSYSQQRRQRVCSGEDPPKTDLMAFSPSLSQGPDSAE--EKQ 787
G GKPTLVCSSAVGSWSYSQQ+ QRVCSGE PPKTDLMAFSP L S + E+Q
Sbjct: 730 GGCRAGKPTLVCSSAVGSWSYSQQQPQRVCSGEGPPKTDLMAFSPCLPPDLGSVDVGEEQ 789
Query: 788 LSESEYVGKPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPTVSSATPEP 847
++ KPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPTVSSATPEP
Sbjct: 790 DLNVDHGLKPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPTVSSATPEP 849
Query: 848 EAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIRQEPTNSQID 907
EAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIRQEPTNSQID
Sbjct: 850 EAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIRQEPTNSQID 909
Query: 908 KSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ 948
KSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
Sbjct: 910 KSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ 950
>gi|14165425 protocadherin alpha 9 isoform 1 precursor [Homo
sapiens]
Length = 950
Score = 1484 bits (3842), Expect = 0.0
Identities = 757/936 (80%), Positives = 823/936 (87%), Gaps = 2/936 (0%)
Query: 15 LLSLLLLAAWEVGSGQLRYSVPEEAKHGTFVGRIAQDLGLELEELVPRLFRVASKRHGDL 74
LLSLL+LA W VGSGQL YSVPEEA+HGTFVGRIAQDLGLEL ELVPRLF++ SK GDL
Sbjct: 15 LLSLLILAMWVVGSGQLHYSVPEEAEHGTFVGRIAQDLGLELAELVPRLFQLDSKGRGDL 74
Query: 75 LEVNLQNGILFVNSRIDREELCGRSAECSIHVEVIVDRPLQVFHVEVEVKDINDNPPIFP 134
LEVNLQNGILFVNSRIDREELCGRSAECSIH+EVIVDRPLQVFHV+VEVKDINDNPP+FP
Sbjct: 75 LEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVDVEVKDINDNPPVFP 134
Query: 135 MTVKTIRFPESRLLDSRFPLEGASDADIGVNALLSYKLSSSEFFFLDIQANDELSESLSL 194
T K + ESR LDSRFPLEGASDADIG NALL+Y+LS +E+FFLD+ +++ + L L
Sbjct: 135 ATQKNLFIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYFFLDVPTSNQQVKPLGL 194
Query: 195 VLGKSLDREETAEVNLLLVATDGGKPELTGTVQILIKVLDVNDNEPTFAQSVYKVKLLEN 254
VL K LDREET E++LLL ATDGGKPELTGTVQ+LI VLD NDN P F +++Y VKL EN
Sbjct: 195 VLRKLLDREETPELHLLLTATDGGKPELTGTVQLLITVLDNNDNAPVFDRTLYTVKLPEN 254
Query: 255 TANGTLVVKLNASDADEGPNSEIVYSLGSDVSSTIQTKFTIDPISGEIRTKGKLDYEEAK 314
+ GTLV+ NASD DEG N +I+YS SDVS I++KF +DP+SG I G +D+EE++
Sbjct: 255 VSIGTLVIHPNASDLDEGLNGDIIYSFSSDVSPDIKSKFHMDPLSGAITVIGHMDFEESR 314
Query: 315 SYEIQVTATDKGTPSMSGHCKISLKLVDINDNTPEVSITSLSLPISENASLGTVIALITV 374
+++I V A DKG P ++GHC + +++VD+NDN P+++I +LS+P+ E+A LGTVIALI+V
Sbjct: 315 AHKIPVEAVDKGFPPLAGHCTLLVEVVDVNDNAPQLTIKTLSVPVKEDAQLGTVIALISV 374
Query: 375 SDRDSGTNGHVTCSLTPHVPFKLVSTFKNYYSLVLDSALDRESVSAYELVVTARDGGSPS 434
D D+ NG VTCSLTPHVPFKLVST+KNYYSLVLD ALDRESVSAYELVVTARDGGSPS
Sbjct: 375 IDLDADANGQVTCSLTPHVPFKLVSTYKNYYSLVLDRALDRESVSAYELVVTARDGGSPS 434
Query: 435 LWATTSVSIEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAWDADAQENALVSYSL 494
LWAT VS+EVADVNDNAPAFAQ EYTVFVKENNPPGCHIFTVSA DADAQENALVSYSL
Sbjct: 435 LWATARVSVEVADVNDNAPAFAQSEYTVFVKENNPPGCHIFTVSARDADAQENALVSYSL 494
Query: 495 VERRVGERALSSYVSVHAESGKVYALQPLDHEEVELLQFQVSARDAGVPPLGSNVTLQVF 554
VERR+GER+LSSYVSVHAESGKVYALQPLDHEE+ELLQFQVSARDAGVPPLGSNVTLQVF
Sbjct: 495 VERRLGERSLSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDAGVPPLGSNVTLQVF 554
Query: 555 VLDENDNAPALLAPRAGTAAGAVSELVPWSVGAGHVVAKVRAVDADSGYNAWLSYELQLG 614
VLDENDNAPALL PR GAVSE+V SVGAG VV KVRAVDADSGYNAWLSYELQ
Sbjct: 555 VLDENDNAPALLTPRMRGTDGAVSEMVLRSVGAGVVVGKVRAVDADSGYNAWLSYELQPE 614
Query: 615 TGSARIPFRVGLYTGEISTTRALDEADSPRHRLLVLVKDHGEPALTATATVLVSLVESGQ 674
T SA IPFRVGLYTGEISTTRALDE D+PR RLLVLVKDHGEPALTATATVLVSLVESGQ
Sbjct: 615 TASASIPFRVGLYTGEISTTRALDETDAPRQRLLVLVKDHGEPALTATATVLVSLVESGQ 674
Query: 675 APKASSRAWVGAAGSEATLVDVNVYLIIAICAVSSLLVLTVLLYTALRCSVPPTEGARAP 734
APK+SSRA VGA G E TLVDVNVYLIIAICAVSSLLVLT+LLYT LRCS PTEG AP
Sbjct: 675 APKSSSRASVGATGPEVTLVDVNVYLIIAICAVSSLLVLTLLLYTVLRCSAMPTEGECAP 734
Query: 735 GKPTLVCSSAVGSWSYSQQRRQRVCSGEDPPKTDLMAFSPSLSQGPDSAEE--KQLSESE 792
GKPTLVCSSAVGSWSYSQQRRQRVCSGE KTDLMAFSP LS S E + + S+
Sbjct: 735 GKPTLVCSSAVGSWSYSQQRRQRVCSGEGKQKTDLMAFSPGLSPCAGSTERTGEPSASSD 794
Query: 793 YVGKPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPTVSSATPEPEAGEV 852
GKPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPTVSSATPEPEAGEV
Sbjct: 795 STGKPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPTVSSATPEPEAGEV 854
Query: 853 SPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIRQEPTNSQIDKSDFI 912
SPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIRQEPTNSQIDKSDFI
Sbjct: 855 SPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIRQEPTNSQIDKSDFI 914
Query: 913 TFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ 948
TFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
Sbjct: 915 TFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ 950
>gi|9256578 protocadherin alpha 12 isoform 1 precursor [Homo
sapiens]
Length = 941
Score = 1483 bits (3839), Expect = 0.0
Identities = 765/945 (80%), Positives = 820/945 (86%), Gaps = 13/945 (1%)
Query: 7 RGRGAWTRLLSLLLLAAWEVGSGQLRYSVPEEAKHGTFVGRIAQDLGLELEELVPRLFRV 66
RG G+ LLSLLLLAAWEVGSGQL YSV EEAKHGTFVGRIAQDLGLEL ELVPRLFRV
Sbjct: 7 RGPGSQRLLLSLLLLAAWEVGSGQLHYSVYEEAKHGTFVGRIAQDLGLELAELVPRLFRV 66
Query: 67 ASKRHGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHVEVIVDRPLQVFHVEVEVKDI 126
ASKRHGDLLEVNLQNGILFVNSRIDRE+LCGRSAECSIH+EVIVDRPLQVFHV+VEVKDI
Sbjct: 67 ASKRHGDLLEVNLQNGILFVNSRIDREKLCGRSAECSIHLEVIVDRPLQVFHVDVEVKDI 126
Query: 127 NDNPPIFPMTVKTIRFPESRLLDSRFPLEGASDADIGVNALLSYKLSSSEFFFLDIQAND 186
NDNPP+F + + ES LDS FPLEGASDADIGVN+LL+Y LS +E F L I+
Sbjct: 127 NDNPPVFREREQKVPVSESAPLDSHFPLEGASDADIGVNSLLTYALSLNENFELKIKTKK 186
Query: 187 ELSESLSLVLGKSLDREETAEVNLLLVATDGGKPELTGTVQILIKVLDVNDNEPTFAQSV 246
+ S LVL K LDRE+T ++NLLL+ DGGKPELTG+VQI I VLDVNDN P F +
Sbjct: 187 DKSILPELVLRKLLDREQTPKLNLLLMVIDGGKPELTGSVQIQITVLDVNDNGPAFDKPS 246
Query: 247 YKVKLLENTANGTLVVKLNASDADEGPNSEIVYSLGSDVSSTIQTKFTIDPISGEIRTKG 306
YKV L EN N T V++LNASD DEG N EI Y + + + + F+I+P +GEIR G
Sbjct: 247 YKVVLSENVQNDTRVIQLNASDPDEGLNGEISYGIKMILPVSEKCMFSINPDTGEIRIYG 306
Query: 307 KLDYEEAKSYEIQVTATDKGTPSMSGHCKISLKLVDINDNTPEVSITSLSLPISENASLG 366
+LD+EE +YEIQV A DKG PSM+GH + ++++D+NDN PEV +TSLSLP+ E+A +G
Sbjct: 307 ELDFEENNAYEIQVNAIDKGIPSMAGHSMVLVEVLDVNDNVPEVMVTSLSLPVQEDAQVG 366
Query: 367 TVIALITVSDRDSGTNGHVTCSLTPHVPFKLVSTFKNYYSLVLDSALDRESVSAYELVVT 426
TVIALI+VSDRDSG NG V CSLTPHVPFKLVST+KNYYSLVLDSALDRESVSAYELVVT
Sbjct: 367 TVIALISVSDRDSGANGQVICSLTPHVPFKLVSTYKNYYSLVLDSALDRESVSAYELVVT 426
Query: 427 ARDGGSPSLWATTSVSIEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAWDADAQE 486
ARDGGSPSLWAT VS+EVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAWDADAQ+
Sbjct: 427 ARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAWDADAQK 486
Query: 487 NALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEEVELLQFQVSARDAGVPPLG 546
NALVSYSLVERRVGE ALSSYVSVHAESGKVYALQPLDHEE+ELLQFQVSARDAGVPPLG
Sbjct: 487 NALVSYSLVERRVGEHALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDAGVPPLG 546
Query: 547 SNVTLQVFVLDENDNAPALLAPRAGTAAGAVSELVPWSVGAGHVVAKVRAVDADSGYNAW 606
SNVTLQVFVLDENDNAPALLA AG+A GAVSELVP SVGAGHVVAKVRAVDADSGYNAW
Sbjct: 547 SNVTLQVFVLDENDNAPALLATPAGSAGGAVSELVPRSVGAGHVVAKVRAVDADSGYNAW 606
Query: 607 LSYELQLGTGSARIPFRVGLYTGEISTTRALDEADSPRHRLLVLVKDHGEPALTATATVL 666
LSYELQ A IPF VGLYTGEISTTR LDEAD+PRHRLLVLVKDHGEPALT+TATVL
Sbjct: 607 LSYELQPAAVGAHIPFHVGLYTGEISTTRILDEADAPRHRLLVLVKDHGEPALTSTATVL 666
Query: 667 VSLVESGQAPKASSRAWVGAAGSEATLVDVNVYLIIAICAVSSLLVLTVLLYTALRCSVP 726
VSLVE+GQAPK SSRA VGA EA LVD+NVYLIIAICAVSSLLVLT+LLYTALRCS P
Sbjct: 667 VSLVENGQAPKTSSRASVGAVDPEAALVDINVYLIIAICAVSSLLVLTLLLYTALRCSAP 726
Query: 727 PTEGARAPGKPTLVCSSAVGSWSYSQQRRQRVCSGEDPPKTDLMAFSPSLSQGPDSAEEK 786
PT APGKPTLVCSSAVGSWSYSQQRRQRVCS E PPKTDLMAFSPSL
Sbjct: 727 PTVSRCAPGKPTLVCSSAVGSWSYSQQRRQRVCSAESPPKTDLMAFSPSL---------- 776
Query: 787 QLSESEYV---GKPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPTVSSA 843
QLS + + +PRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPTVSSA
Sbjct: 777 QLSREDCLNPPSEPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPTVSSA 836
Query: 844 TPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIRQEPTN 903
TPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIRQEPTN
Sbjct: 837 TPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIRQEPTN 896
Query: 904 SQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ 948
SQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
Sbjct: 897 SQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ 941
>gi|9256574 protocadherin alpha 10 isoform 1 precursor [Homo
sapiens]
Length = 948
Score = 1479 bits (3829), Expect = 0.0
Identities = 762/941 (80%), Positives = 816/941 (86%), Gaps = 3/941 (0%)
Query: 10 GAWTRLLSLLLLAAWEVGSGQLRYSVPEEAKHGTFVGRIAQDLGLELEELVPRLFRVASK 69
G LLSLLLLAAWEVGSGQL YSV EEA+HGTFVGRIAQDLGLEL ELV RLFRVASK
Sbjct: 9 GVQCLLLSLLLLAAWEVGSGQLHYSVYEEARHGTFVGRIAQDLGLELAELVQRLFRVASK 68
Query: 70 RHGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHVEVIVDRPLQVFHVEVEVKDINDN 129
RHGDLLEVNLQNGILFVNSRIDREELCGRS ECSIH+EVIVDRPLQVFHV+VEVKDINDN
Sbjct: 69 RHGDLLEVNLQNGILFVNSRIDREELCGRSVECSIHLEVIVDRPLQVFHVDVEVKDINDN 128
Query: 130 PPIFPMTVKTIRFPESRLLDSRFPLEGASDADIGVNALLSYKLSSSEFFFLDIQANDELS 189
PP F +T + + PESRLLDSRFPLEGASDAD+G NALL+YKLS +E+F LDI +
Sbjct: 129 PPRFSVTEQKLSIPESRLLDSRFPLEGASDADVGENALLTYKLSPNEYFVLDIINKKDKD 188
Query: 190 ESLSLVLGKSLDREETAEVNLLLVATDGGKPELTGTVQILIKVLDVNDNEPTFAQSVYKV 249
+ LVL K LDREE ++ LLL ATDGGKPE TG+V +LI VLD NDN P F + VY+V
Sbjct: 189 KFPVLVLRKLLDREENPQLKLLLTATDGGKPEFTGSVSLLILVLDANDNAPIFDRPVYEV 248
Query: 250 KLLENTANGTLVVKLNASDADEGPNSEIVYSLGSDVSSTIQTKFTIDPISGEIRTKGKLD 309
K+ EN N TLV++LNASD+DEG N E++YS S V TI+ KF I+ +GEI+ +D
Sbjct: 249 KMYENQVNQTLVIRLNASDSDEGINKEMMYSFSSLVPPTIRRKFWINERTGEIKVNDAID 308
Query: 310 YEEAKSYEIQVTATDKGTPSMSGHCKISLKLVDINDNTPEVSITSLSLPISENASLGTVI 369
+E++ +YEI V TDKG P M GHC + ++L+D NDN+PEV +TSLSLP+ E+A +GTVI
Sbjct: 309 FEDSNTYEIHVDVTDKGNPPMVGHCTVLVELLDENDNSPEVIVTSLSLPVKEDAQVGTVI 368
Query: 370 ALITVSDRDSGTNGHVTCSLTPHVPFKLVSTFKNYYSLVLDSALDRESVSAYELVVTARD 429
ALI+VSD DSG NG VTCSLTPHVPFKLVST+KNYYSLVLDSALDRE VSAYELVVTARD
Sbjct: 369 ALISVSDHDSGANGQVTCSLTPHVPFKLVSTYKNYYSLVLDSALDRERVSAYELVVTARD 428
Query: 430 GGSPSLWATTSVSIEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAWDADAQENAL 489
GGSP LWAT SVS+EVADVNDNAPAFAQ EYTVFVKENNPPGCHIFTVSAWDADAQENAL
Sbjct: 429 GGSPPLWATASVSVEVADVNDNAPAFAQSEYTVFVKENNPPGCHIFTVSAWDADAQENAL 488
Query: 490 VSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEEVELLQFQVSARDAGVPPLGSNV 549
VSYSLVERR+GER+LSSYVSVHAESGKVYALQPLDHEE+ELLQFQVSARD GVPPLGSN+
Sbjct: 489 VSYSLVERRLGERSLSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDGGVPPLGSNL 548
Query: 550 TLQVFVLDENDNAPALLAPRAGTAAGAVSELVPWSVGAGHVVAKVRAVDADSGYNAWLSY 609
TLQVFVLDENDNAPALLA AG+A GAVSELV SV AGHVVAKVRAVDADSGYNAWLSY
Sbjct: 549 TLQVFVLDENDNAPALLASPAGSAGGAVSELVLRSVVAGHVVAKVRAVDADSGYNAWLSY 608
Query: 610 ELQLGTGSARIPFRVGLYTGEISTTRALDEADSPRHRLLVLVKDHGEPALTATATVLVSL 669
ELQ ARIPFRVGLYTGEISTTRALDE DSPR RLLVLVKDHGEP+LTATATVLVSL
Sbjct: 609 ELQSAAVGARIPFRVGLYTGEISTTRALDETDSPRQRLLVLVKDHGEPSLTATATVLVSL 668
Query: 670 VESGQAPKASSRAWVGAAGSEATLVDVNVYLIIAICAVSSLLVLTVLLYTALRCSVPPTE 729
VE QAPKASSRA VG A E LVDVNVYLIIAICAVSSLLVLT+LLYTALRCS PTE
Sbjct: 669 VEGSQAPKASSRASVGVA-PEVALVDVNVYLIIAICAVSSLLVLTLLLYTALRCSAAPTE 727
Query: 730 GARAPGKPTLVCSSAVGSWSYSQQRRQRVCSGEDPPKTDLMAFSPSLSQGP--DSAEEKQ 787
GA P KPTLVCSSAVGSWSYSQQRRQRVCSGE PK DLMAFSPSL P D E Q
Sbjct: 728 GACGPVKPTLVCSSAVGSWSYSQQRRQRVCSGEGLPKADLMAFSPSLPPCPMVDVDGEDQ 787
Query: 788 LSESEYVGKPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPTVSSATPEP 847
++ KPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPTVSSATPEP
Sbjct: 788 SIGGDHSRKPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPTVSSATPEP 847
Query: 848 EAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIRQEPTNSQID 907
EAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIRQEPTNSQID
Sbjct: 848 EAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIRQEPTNSQID 907
Query: 908 KSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ 948
KSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
Sbjct: 908 KSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ 948
>gi|14165413 protocadherin alpha 4 isoform 2 precursor [Homo
sapiens]
Length = 798
Score = 1236 bits (3199), Expect = 0.0
Identities = 630/779 (80%), Positives = 684/779 (87%)
Query: 15 LLSLLLLAAWEVGSGQLRYSVPEEAKHGTFVGRIAQDLGLELEELVPRLFRVASKRHGDL 74
LL LLLLAAWE G+GQL YSV EEAKHGTFVGRIAQDLGLEL ELVPRLFRVASK G L
Sbjct: 15 LLLLLLLAAWEAGNGQLHYSVSEEAKHGTFVGRIAQDLGLELAELVPRLFRVASKGRGGL 74
Query: 75 LEVNLQNGILFVNSRIDREELCGRSAECSIHVEVIVDRPLQVFHVEVEVKDINDNPPIFP 134
LEVNLQNGILFVNSRIDREELC RSAECSIH+EVIVDRPLQVFHV+VEV+DINDNPP+FP
Sbjct: 75 LEVNLQNGILFVNSRIDREELCRRSAECSIHLEVIVDRPLQVFHVDVEVRDINDNPPVFP 134
Query: 135 MTVKTIRFPESRLLDSRFPLEGASDADIGVNALLSYKLSSSEFFFLDIQANDELSESLSL 194
T K + ESR LDSRFPLEGASDADIG NALL+Y+LS +E+F L+ +DEL + L L
Sbjct: 135 ATQKNLSIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYFSLEKPPDDELVKGLGL 194
Query: 195 VLGKSLDREETAEVNLLLVATDGGKPELTGTVQILIKVLDVNDNEPTFAQSVYKVKLLEN 254
+L KSLDREE E+ L+L ATDGGKPELTGTVQ+LI VLD NDN P F +++YKV+LLEN
Sbjct: 195 ILRKSLDREEAPEIFLVLTATDGGKPELTGTVQLLITVLDANDNAPAFDRTIYKVRLLEN 254
Query: 255 TANGTLVVKLNASDADEGPNSEIVYSLGSDVSSTIQTKFTIDPISGEIRTKGKLDYEEAK 314
NGTLV+KLNASD DEG N +IVYS +D+S +++KF IDPI+G+I KG +D+EE+K
Sbjct: 255 VPNGTLVIKLNASDLDEGLNGDIVYSFSNDISPNVKSKFHIDPITGQIIVKGYIDFEESK 314
Query: 315 SYEIQVTATDKGTPSMSGHCKISLKLVDINDNTPEVSITSLSLPISENASLGTVIALITV 374
SYEI V DKG +SGHC++ +++ D NDN P++ SLSLPI E+A LGTVIALI+V
Sbjct: 315 SYEIIVEGIDKGQLPLSGHCRVIVEVEDNNDNVPDLEFKSLSLPIREDAPLGTVIALISV 374
Query: 375 SDRDSGTNGHVTCSLTPHVPFKLVSTFKNYYSLVLDSALDRESVSAYELVVTARDGGSPS 434
SD+D G NG VTCSLT HVPFKLVSTFKNYYSLVLDSALDRESVSAYELVVTARDGGSPS
Sbjct: 375 SDKDMGVNGLVTCSLTSHVPFKLVSTFKNYYSLVLDSALDRESVSAYELVVTARDGGSPS 434
Query: 435 LWATTSVSIEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAWDADAQENALVSYSL 494
LWAT SVS+EVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAWDADAQENALVSYSL
Sbjct: 435 LWATASVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAWDADAQENALVSYSL 494
Query: 495 VERRVGERALSSYVSVHAESGKVYALQPLDHEEVELLQFQVSARDAGVPPLGSNVTLQVF 554
VERRVGERALSSYVSVHAESGKVYALQPLDHEE+ELLQFQV+ARDAGVPPLGSNVTLQVF
Sbjct: 495 VERRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVTARDAGVPPLGSNVTLQVF 554
Query: 555 VLDENDNAPALLAPRAGTAAGAVSELVPWSVGAGHVVAKVRAVDADSGYNAWLSYELQLG 614
VLDENDNAPALLAPRAG GAVSELVPWSVG GHVVAKVRAVDADSGYNAWLSYELQ G
Sbjct: 555 VLDENDNAPALLAPRAGGTGGAVSELVPWSVGVGHVVAKVRAVDADSGYNAWLSYELQPG 614
Query: 615 TGSARIPFRVGLYTGEISTTRALDEADSPRHRLLVLVKDHGEPALTATATVLVSLVESGQ 674
TG ARIPFRVGLYTGEISTTRALDE D+PRHRLLVLVKDHGEPALTATATVLVSLVESGQ
Sbjct: 615 TGGARIPFRVGLYTGEISTTRALDETDAPRHRLLVLVKDHGEPALTATATVLVSLVESGQ 674
Query: 675 APKASSRAWVGAAGSEATLVDVNVYLIIAICAVSSLLVLTVLLYTALRCSVPPTEGARAP 734
APKASSRA VGA G +A LVDVNVYLIIAICAVSSLLVLT+LLYTALRCS PTEGA AP
Sbjct: 675 APKASSRALVGAVGPDAALVDVNVYLIIAICAVSSLLVLTLLLYTALRCSALPTEGACAP 734
Query: 735 GKPTLVCSSAVGSWSYSQQRRQRVCSGEDPPKTDLMAFSPSLSQGPDSAEEKQLSESEY 793
GKPTLVCSSAVGSWSYSQQRR RVCSGE PPKTDLMAFSPSL D ++ Q +E +
Sbjct: 735 GKPTLVCSSAVGSWSYSQQRRPRVCSGEGPPKTDLMAFSPSLPDSRDREDQLQTTEESF 793
>gi|14165400 protocadherin alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 807
Score = 1232 bits (3187), Expect = 0.0
Identities = 638/791 (80%), Positives = 687/791 (86%)
Query: 1 MASSIRRGRGAWTRLLSLLLLAAWEVGSGQLRYSVPEEAKHGTFVGRIAQDLGLELEELV 60
M S R G GA LL LLLLAAWEVGSGQL YS+PEEAKHGTFVGR+AQDLGLEL ELV
Sbjct: 1 MVFSRRGGLGARDLLLWLLLLAAWEVGSGQLHYSIPEEAKHGTFVGRVAQDLGLELAELV 60
Query: 61 PRLFRVASKRHGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHVEVIVDRPLQVFHVE 120
PRLFRVASK H DLLEVNLQNGILFVNSRIDREELC SAECSIH+E+I DRPLQVFHVE
Sbjct: 61 PRLFRVASKTHRDLLEVNLQNGILFVNSRIDREELCQWSAECSIHLELIADRPLQVFHVE 120
Query: 121 VEVKDINDNPPIFPMTVKTIRFPESRLLDSRFPLEGASDADIGVNALLSYKLSSSEFFFL 180
V+VKDINDNPP+F + I PESRLL+SRFP+EGA+DADIG NALL+Y LS S++F L
Sbjct: 121 VKVKDINDNPPVFRGREQIIFIPESRLLNSRFPIEGAADADIGANALLTYTLSPSDYFSL 180
Query: 181 DIQANDELSESLSLVLGKSLDREETAEVNLLLVATDGGKPELTGTVQILIKVLDVNDNEP 240
D++A+DELS+SL L L K LDREET E++LLL ATDGGKPEL GTV++LI VLDVNDN P
Sbjct: 181 DVEASDELSKSLWLELRKYLDREETPELHLLLTATDGGKPELQGTVELLITVLDVNDNAP 240
Query: 241 TFAQSVYKVKLLENTANGTLVVKLNASDADEGPNSEIVYSLGSDVSSTIQTKFTIDPISG 300
F Q+VY+V LLE TANGTLV LNASDADEG N E+V+S S +S IQ KF +D SG
Sbjct: 241 LFDQAVYRVHLLETTANGTLVTTLNASDADEGVNGEVVFSFDSGISRDIQEKFKVDSSSG 300
Query: 301 EIRTKGKLDYEEAKSYEIQVTATDKGTPSMSGHCKISLKLVDINDNTPEVSITSLSLPIS 360
EIR KLDYEE KSYEIQV A DKG+P MS HCK+ +K++D+NDN PE+++TSL LPI
Sbjct: 301 EIRLIDKLDYEETKSYEIQVKAVDKGSPPMSNHCKVLVKVLDVNDNAPELAVTSLYLPIR 360
Query: 361 ENASLGTVIALITVSDRDSGTNGHVTCSLTPHVPFKLVSTFKNYYSLVLDSALDRESVSA 420
E+A L TVIALITVSDRDSG NG VTCSL PHVPFKLVSTFKNYYSLVLDSALDRES+S
Sbjct: 361 EDAPLSTVIALITVSDRDSGANGQVTCSLMPHVPFKLVSTFKNYYSLVLDSALDRESLSV 420
Query: 421 YELVVTARDGGSPSLWATTSVSIEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAW 480
YELVVTARDGGSPSLWAT VS+EVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSA
Sbjct: 421 YELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAR 480
Query: 481 DADAQENALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEEVELLQFQVSARDA 540
DADAQENALVSYSLVERRVGERALS+YVSVHAESGKVYALQPLDHEE+ELLQFQVSARDA
Sbjct: 481 DADAQENALVSYSLVERRVGERALSNYVSVHAESGKVYALQPLDHEELELLQFQVSARDA 540
Query: 541 GVPPLGSNVTLQVFVLDENDNAPALLAPRAGTAAGAVSELVPWSVGAGHVVAKVRAVDAD 600
GVPPLGSNVTLQVFVLDENDNAPALLAPR G GAVSELVP VGAGHVVAKVRAVDAD
Sbjct: 541 GVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTIGAVSELVPRLVGAGHVVAKVRAVDAD 600
Query: 601 SGYNAWLSYELQLGTGSARIPFRVGLYTGEISTTRALDEADSPRHRLLVLVKDHGEPALT 660
SGYNAWLSYELQ G ARIPFRVGLYTGEISTTR LDEAD R+RLLVLVKDHGEPALT
Sbjct: 601 SGYNAWLSYELQPAAGGARIPFRVGLYTGEISTTRVLDEADLSRYRLLVLVKDHGEPALT 660
Query: 661 ATATVLVSLVESGQAPKASSRAWVGAAGSEATLVDVNVYLIIAICAVSSLLVLTVLLYTA 720
ATATVLVSLVESGQAPKASSRA VG AG EA LVDVNVYLIIAICAVSSLLVLT+LLYTA
Sbjct: 661 ATATVLVSLVESGQAPKASSRASVGVAGPEAALVDVNVYLIIAICAVSSLLVLTLLLYTA 720
Query: 721 LRCSVPPTEGARAPGKPTLVCSSAVGSWSYSQQRRQRVCSGEDPPKTDLMAFSPSLSQGP 780
LRCSVPPTEGA PGKPTLVCSSA+GSWS SQQRRQRVCS E PPKTDLMAFSP LS
Sbjct: 721 LRCSVPPTEGAYVPGKPTLVCSSALGSWSNSQQRRQRVCSSEGPPKTDLMAFSPGLSPSL 780
Query: 781 DSAEEKQLSES 791
+++E + E+
Sbjct: 781 NTSERNEQPEA 791
>gi|14165410 protocadherin alpha 3 isoform 2 precursor [Homo
sapiens]
Length = 824
Score = 1226 bits (3172), Expect = 0.0
Identities = 635/789 (80%), Positives = 686/789 (86%), Gaps = 2/789 (0%)
Query: 1 MASSIRRGRGAWTRLLSLLLLAAWEVGSGQLRYSVPEEAKHGTFVGRIAQDLGLELEELV 60
M S R GA LLSLLLLAA EVGSGQL YSV EEAKHGTFVGRIAQDLGLEL ELV
Sbjct: 1 MLFSWREDPGAQCLLLSLLLLAASEVGSGQLHYSVSEEAKHGTFVGRIAQDLGLELAELV 60
Query: 61 PRLFRVASKRHGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHVEVIVDRPLQVFHVE 120
PRLFRVASKRHGDLLEVNLQNGILFVNSRIDREELCGRSAECSIH+EVIVDRPLQVFHVE
Sbjct: 61 PRLFRVASKRHGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVE 120
Query: 121 VEVKDINDNPPIFPMTVKTIRFPESRLLDSRFPLEGASDADIGVNALLSYKLSSSEFFFL 180
VEVKDINDN P+FPM VK + ESR SRF LEGASDADIG N+LL+Y L S+E+F L
Sbjct: 121 VEVKDINDNAPVFPMAVKNLFISESRQPGSRFSLEGASDADIGTNSLLTYSLDSTEYFTL 180
Query: 181 DIQANDELSESLSLVLGKSLDREETAEVNLLLVATDGGKPELTGTVQILIKVLDVNDNEP 240
D++ NDE +SL LVL K+L+RE+T + LL+ A DGGKPELTGT Q+ I VLDVNDN P
Sbjct: 181 DVKRNDEEIKSLGLVLKKNLNREDTPKHYLLITAIDGGKPELTGTTQLKITVLDVNDNAP 240
Query: 241 TFAQSVYKVKLLENTANGTLVVKLNASDADEGPNSEIVYSLGSDVSSTIQTKFTIDPISG 300
F +++YKV+LLEN NGTLVV +NA+D DEG N +I YS +D+S+ I +KF +DP++G
Sbjct: 241 AFERTIYKVRLLENAPNGTLVVTVNATDLDEGVNKDIAYSFNTDMSADILSKFHLDPVNG 300
Query: 301 EIRTKGKLDYEEAKSYEIQVTATDKGTPSMSGHCKISLKLVDINDNTPEVSITSLSLPIS 360
+I KG +D+EE+KSYEIQV ATDKG P MS HC + L++VDINDN PE+ I SLSLP+
Sbjct: 301 QISVKGNIDFEESKSYEIQVEATDKGNPPMSDHCTVLLEIVDINDNVPELVIQSLSLPVL 360
Query: 361 ENASLGTVIALITVSDRDSGTNGHVTCSLTPHVPFKLVSTFKNYYSLVLDSALDRESVSA 420
E++ L TVIALI+VSDRDSG NG VTCSLTPHVPFKLVSTFKNYYSLVLDS LDRESVSA
Sbjct: 361 EDSPLSTVIALISVSDRDSGVNGQVTCSLTPHVPFKLVSTFKNYYSLVLDSPLDRESVSA 420
Query: 421 YELVVTARDGGSPSLWATTSVSIEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAW 480
YELVVTARDGGSPSLWAT SVS+EVADVNDNAPAF+Q EYTVFVKENNPPGCHIFTVSA
Sbjct: 421 YELVVTARDGGSPSLWATASVSVEVADVNDNAPAFSQSEYTVFVKENNPPGCHIFTVSAR 480
Query: 481 DADAQENALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEEVELLQFQVSARDA 540
DADAQENALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEE+ELLQFQVSARDA
Sbjct: 481 DADAQENALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDA 540
Query: 541 GVPPLGSNVTLQVFVLDENDNAPALLAPRAGTAAGAVSELVPWSVGAGHVVAKVRAVDAD 600
GVPPLGSNVTLQVFVLDENDNAPALL PR G GAVSELVP SVGAGHVVAKVRAVDAD
Sbjct: 541 GVPPLGSNVTLQVFVLDENDNAPALLMPRVGGIGGAVSELVPRSVGAGHVVAKVRAVDAD 600
Query: 601 SGYNAWLSYELQLGTGSARIPFRVGLYTGEISTTRALDEADSPRHRLLVLVKDHGEPALT 660
SGYNAWLSYELQ GTG ARIPFRVGLYTGEISTTRALDE D+PRHRLLVLVKDHGEP+LT
Sbjct: 601 SGYNAWLSYELQPGTGGARIPFRVGLYTGEISTTRALDEVDAPRHRLLVLVKDHGEPSLT 660
Query: 661 ATATVLVSLVESGQAPKASSRAWVGAAGSEATLVDVNVYLIIAICAVSSLLVLTVLLYTA 720
ATATVLVSLVESGQAPKASS+A GA G EA LVDVNVYLI+AICAVSSLLVLT+LLYTA
Sbjct: 661 ATATVLVSLVESGQAPKASSQASAGATGPEAALVDVNVYLIVAICAVSSLLVLTLLLYTA 720
Query: 721 LRCSVPPTEGARAPGKPTLVCSSAVGSWSYSQQRRQRVCSGEDPPKTDLMAFSPSLSQGP 780
LRCS PPTEG PGKPTLVCSSAVGSWSYSQQR+QRVCSGE PKTDLMAFSPSL P
Sbjct: 721 LRCSAPPTEGDCGPGKPTLVCSSAVGSWSYSQQRQQRVCSGEGLPKTDLMAFSPSLPPCP 780
Query: 781 DS--AEEKQ 787
S EEKQ
Sbjct: 781 ISRDREEKQ 789
>gi|14165397 protocadherin alpha 13 isoform 2 precursor [Homo
sapiens]
Length = 807
Score = 1207 bits (3122), Expect = 0.0
Identities = 625/784 (79%), Positives = 678/784 (86%)
Query: 1 MASSIRRGRGAWTRLLSLLLLAAWEVGSGQLRYSVPEEAKHGTFVGRIAQDLGLELEELV 60
M SS + G LL LL+LAAWE GSGQL YSVPEEAKHGTFVGRIAQDLGLEL ELV
Sbjct: 1 MLSSWQGGPRPRQLLLWLLILAAWETGSGQLHYSVPEEAKHGTFVGRIAQDLGLELAELV 60
Query: 61 PRLFRVASKRHGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHVEVIVDRPLQVFHVE 120
PRLFRVASKRHGDLLEVNLQNGILFVNSRIDREELCGRSAECSIH+EVIVDRPLQVFHVE
Sbjct: 61 PRLFRVASKRHGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVE 120
Query: 121 VEVKDINDNPPIFPMTVKTIRFPESRLLDSRFPLEGASDADIGVNALLSYKLSSSEFFFL 180
V+V+DINDNPPIFP + K I ESR ++RFPL+GASDADIGVN+ L+Y+L +++F L
Sbjct: 121 VKVRDINDNPPIFPESKKRIIIAESRPPETRFPLDGASDADIGVNSALTYRLDPNDYFTL 180
Query: 181 DIQANDELSESLSLVLGKSLDREETAEVNLLLVATDGGKPELTGTVQILIKVLDVNDNEP 240
D Q + E SLSLVL K+LDREE E +LLL A+DGGKPELTGTVQ+LI +LDVNDN P
Sbjct: 181 DAQNSLEQMSSLSLVLRKTLDREEIQEHSLLLTASDGGKPELTGTVQLLITILDVNDNAP 240
Query: 241 TFAQSVYKVKLLENTANGTLVVKLNASDADEGPNSEIVYSLGSDVSSTIQTKFTIDPISG 300
F QSVYKV +LEN NGTLV+KLNA+D D+G N +IVYS V + FTI+P +G
Sbjct: 241 EFYQSVYKVTVLENAFNGTLVIKLNATDPDDGTNGDIVYSFRRPVWPAVVYAFTINPNNG 300
Query: 301 EIRTKGKLDYEEAKSYEIQVTATDKGTPSMSGHCKISLKLVDINDNTPEVSITSLSLPIS 360
EIRTKGKLD+EE K YEI V A DKG M+GHC + ++++D+NDN PEV+ITSLSLPI
Sbjct: 301 EIRTKGKLDFEEKKLYEISVEAVDKGNIPMAGHCTLLVEVLDVNDNAPEVTITSLSLPIR 360
Query: 361 ENASLGTVIALITVSDRDSGTNGHVTCSLTPHVPFKLVSTFKNYYSLVLDSALDRESVSA 420
E+ +IALI+VSDRDSG+NG VTC+LTPHVPFKLVST+KNYYSLVLDSALDRESVSA
Sbjct: 361 EDTQPSAIIALISVSDRDSGSNGQVTCTLTPHVPFKLVSTYKNYYSLVLDSALDRESVSA 420
Query: 421 YELVVTARDGGSPSLWATTSVSIEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAW 480
YELVVTARDGGSPSLWAT SVS+ VADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSA
Sbjct: 421 YELVVTARDGGSPSLWATASVSVGVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAQ 480
Query: 481 DADAQENALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEEVELLQFQVSARDA 540
DADAQENALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEE+ELLQFQVSARD+
Sbjct: 481 DADAQENALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDS 540
Query: 541 GVPPLGSNVTLQVFVLDENDNAPALLAPRAGTAAGAVSELVPWSVGAGHVVAKVRAVDAD 600
GVPPLGSNVTLQVFVLDENDNAPALL P AG+A G VSEL+P SVGAGHVVAKVRAVDAD
Sbjct: 541 GVPPLGSNVTLQVFVLDENDNAPALLTPGAGSAGGTVSELMPRSVGAGHVVAKVRAVDAD 600
Query: 601 SGYNAWLSYELQLGTGSARIPFRVGLYTGEISTTRALDEADSPRHRLLVLVKDHGEPALT 660
SGYNAWLSYELQL ARIPFRVGLYTGEISTTR LDE D+P HRLLVLVKDHGEPALT
Sbjct: 601 SGYNAWLSYELQLAAVGARIPFRVGLYTGEISTTRPLDEVDAPHHRLLVLVKDHGEPALT 660
Query: 661 ATATVLVSLVESGQAPKASSRAWVGAAGSEATLVDVNVYLIIAICAVSSLLVLTVLLYTA 720
ATATVL+SLVESGQAP+ASSRA GA G EA LVDVNVYLIIAICAVSSLLVLT+LLYTA
Sbjct: 661 ATATVLLSLVESGQAPQASSRASAGAVGPEAALVDVNVYLIIAICAVSSLLVLTLLLYTA 720
Query: 721 LRCSVPPTEGARAPGKPTLVCSSAVGSWSYSQQRRQRVCSGEDPPKTDLMAFSPSLSQGP 780
LRCS PPTEGA APGKPTLVCSSA GSWSYSQQRR RVCSGE P KTDLMAFSPSL
Sbjct: 721 LRCSAPPTEGACAPGKPTLVCSSAAGSWSYSQQRRPRVCSGEGPHKTDLMAFSPSLPPCL 780
Query: 781 DSAE 784
SAE
Sbjct: 781 GSAE 784
>gi|14165390 protocadherin alpha 6 isoform 2 precursor [Homo
sapiens]
Length = 803
Score = 1197 bits (3098), Expect = 0.0
Identities = 615/779 (78%), Positives = 675/779 (86%), Gaps = 3/779 (0%)
Query: 15 LLSLLLLAAWEVGSGQLRYSVPEEAKHGTFVGRIAQDLGLELEELVPRLFRVASKRHGDL 74
LL LLLLAAW+VGSGQL YSVPEEAKHGTFVGRIAQDLGLEL ELVPRLFR+ASK DL
Sbjct: 15 LLPLLLLAAWKVGSGQLHYSVPEEAKHGTFVGRIAQDLGLELAELVPRLFRMASKDREDL 74
Query: 75 LEVNLQNGILFVNSRIDREELCGRSAECSIHVEVIVDRPLQVFHVEVEVKDINDNPPIFP 134
LEVNLQNGILFVNSRIDREELCGRSAECSIH+EVIVDRPLQVFHV+VEV+DINDNPP+FP
Sbjct: 75 LEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVDVEVRDINDNPPLFP 134
Query: 135 MTVKTIRFPESRLLDSRFPLEGASDADIGVNALLSYKLSSSEFFFLDIQANDELSESLSL 194
+ + + ESRL DS FPLEGASDAD+G N++L+YKLSSSE+F LD++ N + ++ + L
Sbjct: 135 VEEQRVLIYESRLPDSVFPLEGASDADVGSNSILTYKLSSSEYFGLDVKINSDDNKQIGL 194
Query: 195 VLGKSLDREETAEVNLLLVATDGGKPELTGTVQILIKVLDVNDNEPTFAQSVYKVKLLEN 254
+L KSLDREE NL L ATDGGKPELTGTVQ+L+ VLDVNDN PTF QS Y+V++ EN
Sbjct: 195 LLKKSLDREEAPAHNLFLTATDGGKPELTGTVQLLVTVLDVNDNAPTFEQSEYEVRIFEN 254
Query: 255 TANGTLVVKLNASDADEGPNSEIVYSLGSDVSSTIQTKFTIDPISGEIRTKGKLDYEEAK 314
NGT V++LNASD DEG N I YS S V++ + F+ID +GEI +G LD+E+
Sbjct: 255 ADNGTTVIRLNASDRDEGANGAISYSFNSLVAAMVIDHFSIDRNTGEIVIRGNLDFEQEN 314
Query: 315 SYEIQVTATDKGTPSMSGHCKISLKLVDINDNTPEVSITSLSLPISENASLGTVIALITV 374
Y+I + ATDKG P M+GHC + ++++D NDN PE+++TSLSLP+ E+A GTVIALI+V
Sbjct: 315 LYKILIDATDKGHPPMAGHCTVLVRILDKNDNVPEIALTSLSLPVREDAQFGTVIALISV 374
Query: 375 SDRDSGTNGHVTCSLTPHVPFKLVSTFKNYYSLVLDSALDRESVSAYELVVTARDGGSPS 434
+D DSG NG V CSLTPHVPFKLVSTFKNYYSLVLDSALDRESVSAYELVVTARDGGSPS
Sbjct: 375 NDLDSGANGQVNCSLTPHVPFKLVSTFKNYYSLVLDSALDRESVSAYELVVTARDGGSPS 434
Query: 435 LWATTSVSIEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAWDADAQENALVSYSL 494
LWAT S+S+EVAD+NDNAPAFAQPEYTVFVKENNPPGCHIFTVSA DADAQENALVSYSL
Sbjct: 435 LWATASLSVEVADMNDNAPAFAQPEYTVFVKENNPPGCHIFTVSARDADAQENALVSYSL 494
Query: 495 VERRVGERALSSYVSVHAESGKVYALQPLDHEEVELLQFQVSARDAGVPPLGSNVTLQVF 554
VERRVGERALSSY+SVHAESGKVYALQPLDHEE+ELLQFQVSARDAGVPPLGSNVTLQVF
Sbjct: 495 VERRVGERALSSYISVHAESGKVYALQPLDHEELELLQFQVSARDAGVPPLGSNVTLQVF 554
Query: 555 VLDENDNAPALLAPRAGTAAGAVSELVPWSVGAGHVVAKVRAVDADSGYNAWLSYELQLG 614
VLDENDNAPALLAPR G GAVSELVP S+GAG VVAKVRAVDADSGYNAWLSYELQ
Sbjct: 555 VLDENDNAPALLAPRVGGTGGAVSELVPRSLGAGQVVAKVRAVDADSGYNAWLSYELQPP 614
Query: 615 TGSARIPFRVGLYTGEISTTRALDEADSPRHRLLVLVKDHGEPALTATATVLVSLVESGQ 674
SAR PFRVGLYTGEISTTR LDEADSPRHRLLVLVKDHGEPALTATATVLVSLVESGQ
Sbjct: 615 ASSARFPFRVGLYTGEISTTRVLDEADSPRHRLLVLVKDHGEPALTATATVLVSLVESGQ 674
Query: 675 APKASSRAWVGAAGSEATLVDVNVYLIIAICAVSSLLVLTVLLYTALRCSVPPTEGARAP 734
APKASSRA VGAAG EA LVDVNVYLIIAICAVSSLLVLT+LLYTALRCS PPTEGA
Sbjct: 675 APKASSRASVGAAGPEAALVDVNVYLIIAICAVSSLLVLTLLLYTALRCSAPPTEGACTA 734
Query: 735 GKPTLVCSSAVGSWSYSQQRRQRVCSGEDPPKTDLMAFSPSLSQGP---DSAEEKQLSE 790
KPTLVCSSAVGSWSYSQQRRQRVCSGE PPK DLMAFSPSLS P AE + L+E
Sbjct: 735 DKPTLVCSSAVGSWSYSQQRRQRVCSGEGPPKMDLMAFSPSLSPCPIMMGKAENQDLNE 793
>gi|14165416 protocadherin alpha 5 isoform 2 precursor [Homo
sapiens]
Length = 816
Score = 1195 bits (3092), Expect = 0.0
Identities = 616/779 (79%), Positives = 667/779 (85%)
Query: 6 RRGRGAWTRLLSLLLLAAWEVGSGQLRYSVPEEAKHGTFVGRIAQDLGLELEELVPRLFR 65
RRG LL LLLA W+ GSGQL YS+PEEAKHGTFVGRIAQDLGLEL ELVPRLFR
Sbjct: 5 RRGSLGSRLLLLWLLLAYWKAGSGQLHYSIPEEAKHGTFVGRIAQDLGLELAELVPRLFR 64
Query: 66 VASKRHGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHVEVIVDRPLQVFHVEVEVKD 125
VASK GDLLEVNLQNGILFVNSRIDREELC R AECSIH+EVIVDRPLQVFHVEV VKD
Sbjct: 65 VASKGRGDLLEVNLQNGILFVNSRIDREELCRRRAECSIHLEVIVDRPLQVFHVEVAVKD 124
Query: 126 INDNPPIFPMTVKTIRFPESRLLDSRFPLEGASDADIGVNALLSYKLSSSEFFFLDIQAN 185
INDNPP F + + ESR+ DSRFPLEGASD DIG NA L Y+L+ +E+F LD++ N
Sbjct: 125 INDNPPRFSRQEQRLFILESRMPDSRFPLEGASDLDIGANAQLRYRLNPNEYFDLDVKTN 184
Query: 186 DELSESLSLVLGKSLDREETAEVNLLLVATDGGKPELTGTVQILIKVLDVNDNEPTFAQS 245
+E + L LVL KSLDREET E LL++ATDGGKPELTGTVQ+LI VLD NDN P F +S
Sbjct: 185 EEETNFLELVLRKSLDREETQEHRLLVIATDGGKPELTGTVQLLINVLDANDNAPEFDKS 244
Query: 246 VYKVKLLENTANGTLVVKLNASDADEGPNSEIVYSLGSDVSSTIQTKFTIDPISGEIRTK 305
+Y V+LLEN +GTLV+KLNASDADEG N EIVY + V +++KF I+ +GEI+
Sbjct: 245 IYNVRLLENAPSGTLVIKLNASDADEGINKEIVYFFSNLVLDDVKSKFIINSNTGEIKVN 304
Query: 306 GKLDYEEAKSYEIQVTATDKGTPSMSGHCKISLKLVDINDNTPEVSITSLSLPISENASL 365
G+LDYE+ SYEI + A DK T +SGHCK+ +KL+D+NDNTPE++IT+L LP+ E+A L
Sbjct: 305 GELDYEDYNSYEINIDAMDKSTFPLSGHCKVVVKLLDVNDNTPEMAITTLFLPVKEDAPL 364
Query: 366 GTVIALITVSDRDSGTNGHVTCSLTPHVPFKLVSTFKNYYSLVLDSALDRESVSAYELVV 425
TVIALI+VSDRDSG NG VTCSL PHVPFKLVSTFKNYYSLVLDSALDRESVS YELVV
Sbjct: 365 STVIALISVSDRDSGANGQVTCSLMPHVPFKLVSTFKNYYSLVLDSALDRESVSVYELVV 424
Query: 426 TARDGGSPSLWATTSVSIEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAWDADAQ 485
TARDGGSPSLWAT SVS+EVADVNDNAPAFAQP+YTVFVKENNPPGCHIFTVSA DADAQ
Sbjct: 425 TARDGGSPSLWATASVSVEVADVNDNAPAFAQPQYTVFVKENNPPGCHIFTVSARDADAQ 484
Query: 486 ENALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEEVELLQFQVSARDAGVPPL 545
ENALVSYSLVERRVGER LSSYVSVHAESGKVYALQPLDHEEVELLQFQVSARDAGVPPL
Sbjct: 485 ENALVSYSLVERRVGERPLSSYVSVHAESGKVYALQPLDHEEVELLQFQVSARDAGVPPL 544
Query: 546 GSNVTLQVFVLDENDNAPALLAPRAGTAAGAVSELVPWSVGAGHVVAKVRAVDADSGYNA 605
GSNVTLQVFVLDENDNAPALL PR G GAVSELVP SVGAGHVVAKVRAVD DSGYNA
Sbjct: 545 GSNVTLQVFVLDENDNAPALLVPRVGGTGGAVSELVPRSVGAGHVVAKVRAVDPDSGYNA 604
Query: 606 WLSYELQLGTGSARIPFRVGLYTGEISTTRALDEADSPRHRLLVLVKDHGEPALTATATV 665
WLSYELQ GSARIPFRVGLYTGEISTTR+LDE ++PRHRLLVLVKDHGEP LTATATV
Sbjct: 605 WLSYELQPAPGSARIPFRVGLYTGEISTTRSLDETEAPRHRLLVLVKDHGEPPLTATATV 664
Query: 666 LVSLVESGQAPKASSRAWVGAAGSEATLVDVNVYLIIAICAVSSLLVLTVLLYTALRCSV 725
LVSLVESGQAPKASSRA GA G EA LVDVNVYLIIAICAVSSLLVLT+LLYTALRCS
Sbjct: 665 LVSLVESGQAPKASSRASAGAVGPEAALVDVNVYLIIAICAVSSLLVLTLLLYTALRCSA 724
Query: 726 PPTEGARAPGKPTLVCSSAVGSWSYSQQRRQRVCSGEDPPKTDLMAFSPSLSQGPDSAE 784
PTE GKPTL+CSSAVGSWSYSQQRRQRVCSGE PPKTDLMAFSPSL QGP S +
Sbjct: 725 QPTEAVCTRGKPTLLCSSAVGSWSYSQQRRQRVCSGEAPPKTDLMAFSPSLPQGPTSTD 783
>gi|14165387 protocadherin alpha 11 isoform 2 precursor [Homo
sapiens]
Length = 810
Score = 1189 bits (3077), Expect = 0.0
Identities = 617/785 (78%), Positives = 675/785 (85%), Gaps = 1/785 (0%)
Query: 6 RRGRGAWTRLLSLLLLAAWEVGSGQLRYSVPEEAKHGTFVGRIAQDLGLELEELVPRLFR 65
RRG G L LLLL WEVGSGQL YSV EEAKHGTFVGRIAQDLGLEL ELV RLFR
Sbjct: 6 RRGLGTPRLQLWLLLLEFWEVGSGQLHYSVSEEAKHGTFVGRIAQDLGLELAELVQRLFR 65
Query: 66 VASKRHGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHVEVIVDRPLQVFHVEVEVKD 125
VASK HGDLLEVNLQNGILFVNSRIDREELCG+SAECSIH+EVIVDRPLQVFHV VEVKD
Sbjct: 66 VASKTHGDLLEVNLQNGILFVNSRIDREELCGQSAECSIHLEVIVDRPLQVFHVNVEVKD 125
Query: 126 INDNPPIFPMTVKTIRFPESRLLDSRFPLEGASDADIGVNALLSYKLSSSEFFFLDIQAN 185
INDNPP+F + + + ES+ DSRFPLEGASDADI NALL+Y+LS +E+F LD N
Sbjct: 126 INDNPPVFSLREQKLLIAESKQSDSRFPLEGASDADIEENALLTYRLSKNEYFSLDSPTN 185
Query: 186 DELSESLSLVLGKSLDREETAEVNLLLVATDGGKPELTGTVQILIKVLDVNDNEPTFAQS 245
+ + LSL+L KSLDRE+T E+NLLL ATDGGKPELTGTV++L++VLDVNDN+P F +S
Sbjct: 186 GKQIKRLSLILKKSLDREKTPELNLLLTATDGGKPELTGTVRLLVQVLDVNDNDPEFDKS 245
Query: 246 VYKVKLLENTANGTLVVKLNASDADEGPNSEIVYSLGSDVSSTIQTKFTIDPISGEIRTK 305
YKV L+EN A TLV+KLNA+D DEG N E+ YSL S + + FT+D +GE+R
Sbjct: 246 EYKVSLMENAAKETLVLKLNATDRDEGVNGEVTYSLMS-IKPNGRHLFTLDQNNGEVRVN 304
Query: 306 GKLDYEEAKSYEIQVTATDKGTPSMSGHCKISLKLVDINDNTPEVSITSLSLPISENASL 365
G LDYEE K Y+I+V ATDKGTP M+GHC + ++++D NDN+PEV++TSLSLP+ E+A
Sbjct: 305 GTLDYEENKFYKIEVQATDKGTPPMAGHCTVWVEILDTNDNSPEVAVTSLSLPVREDAQP 364
Query: 366 GTVIALITVSDRDSGTNGHVTCSLTPHVPFKLVSTFKNYYSLVLDSALDRESVSAYELVV 425
TVIALI+VSDRDSG NG VTCSLTPHVPFKLVSTFKNYYSLVLDSALDRE+V AYELVV
Sbjct: 365 STVIALISVSDRDSGVNGQVTCSLTPHVPFKLVSTFKNYYSLVLDSALDRENVWAYELVV 424
Query: 426 TARDGGSPSLWATTSVSIEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAWDADAQ 485
TARDGGSPSLWAT VS+EVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSA DADAQ
Sbjct: 425 TARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSARDADAQ 484
Query: 486 ENALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEEVELLQFQVSARDAGVPPL 545
ENALVSYSLVERR+G+RALSSYVSVHAESGKVYALQPLDHEE+ELLQFQVSARDAGVPPL
Sbjct: 485 ENALVSYSLVERRLGDRALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDAGVPPL 544
Query: 546 GSNVTLQVFVLDENDNAPALLAPRAGTAAGAVSELVPWSVGAGHVVAKVRAVDADSGYNA 605
SNVTLQVFVLDENDNAPALLA +AG+A GAV++LVP SVGAGHVVAKVRAVDADSGYNA
Sbjct: 545 SSNVTLQVFVLDENDNAPALLATQAGSAGGAVNKLVPRSVGAGHVVAKVRAVDADSGYNA 604
Query: 606 WLSYELQLGTGSARIPFRVGLYTGEISTTRALDEADSPRHRLLVLVKDHGEPALTATATV 665
WLSYELQ G +RIPFRVGLYTGEISTTRALDEADSPRHRLLVLVKDHGEPALTATATV
Sbjct: 605 WLSYELQPAAGGSRIPFRVGLYTGEISTTRALDEADSPRHRLLVLVKDHGEPALTATATV 664
Query: 666 LVSLVESGQAPKASSRAWVGAAGSEATLVDVNVYLIIAICAVSSLLVLTVLLYTALRCSV 725
LVSLVESGQAPKASSR GAA EA LVDVNVYLIIAIC VSSLLVLT+LLYTAL S
Sbjct: 665 LVSLVESGQAPKASSRTLAGAASPEAALVDVNVYLIIAICVVSSLLVLTLLLYTALWWSA 724
Query: 726 PPTEGARAPGKPTLVCSSAVGSWSYSQQRRQRVCSGEDPPKTDLMAFSPSLSQGPDSAEE 785
PTEGA APGKPTLVCS AVGSWSYSQQRRQRVCS E PPKTDLMAFSPSL G + EE
Sbjct: 725 TPTEGACAPGKPTLVCSRAVGSWSYSQQRRQRVCSEEGPPKTDLMAFSPSLPLGLNKEEE 784
Query: 786 KQLSE 790
+ E
Sbjct: 785 GERQE 789
>gi|14165419 protocadherin alpha 7 isoform 2 precursor [Homo
sapiens]
Length = 789
Score = 1187 bits (3070), Expect = 0.0
Identities = 606/770 (78%), Positives = 669/770 (86%)
Query: 15 LLSLLLLAAWEVGSGQLRYSVPEEAKHGTFVGRIAQDLGLELEELVPRLFRVASKRHGDL 74
LL +++LAAWE G GQL YSVPEEAKHG FVGRIAQDLGLEL ELVPRLFR K GDL
Sbjct: 15 LLFIIILAAWEAGRGQLHYSVPEEAKHGNFVGRIAQDLGLELAELVPRLFRAVCKFRGDL 74
Query: 75 LEVNLQNGILFVNSRIDREELCGRSAECSIHVEVIVDRPLQVFHVEVEVKDINDNPPIFP 134
LEVNLQNGILFVNSRIDREELCGRSAECSIH+EVIV+RPLQVFHV+VEVKDINDNPP+FP
Sbjct: 75 LEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVERPLQVFHVDVEVKDINDNPPVFP 134
Query: 135 MTVKTIRFPESRLLDSRFPLEGASDADIGVNALLSYKLSSSEFFFLDIQANDELSESLSL 194
T + + ESR LDSRFPLEGASDADIG NALL+Y+LS +E+FFLD+ +++ + L L
Sbjct: 135 ATQRNLFIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYFFLDVPTSNQQVKPLGL 194
Query: 195 VLGKSLDREETAEVNLLLVATDGGKPELTGTVQILIKVLDVNDNEPTFAQSVYKVKLLEN 254
VL K LDREET E++LLL ATDGGKPELTGTVQ+LI VLD NDN P F +++Y VKL EN
Sbjct: 195 VLRKLLDREETPELHLLLTATDGGKPELTGTVQLLITVLDNNDNAPVFDRTLYTVKLPEN 254
Query: 255 TANGTLVVKLNASDADEGPNSEIVYSLGSDVSSTIQTKFTIDPISGEIRTKGKLDYEEAK 314
+ GTLV+ NASD DEG N +I+YS SDVS I++KF +DP+SG I G +D+EE++
Sbjct: 255 VSIGTLVIHPNASDLDEGLNGDIIYSFSSDVSPDIKSKFHMDPLSGAITVIGHMDFEESR 314
Query: 315 SYEIQVTATDKGTPSMSGHCKISLKLVDINDNTPEVSITSLSLPISENASLGTVIALITV 374
+++I V A DKG P ++GHC + +++VD+NDN P++++TSLSLPI E+A GTVI LI+V
Sbjct: 315 AHKIPVEAVDKGFPPLAGHCTVLVEVVDVNDNAPQLTLTSLSLPIPEDAQPGTVITLISV 374
Query: 375 SDRDSGTNGHVTCSLTPHVPFKLVSTFKNYYSLVLDSALDRESVSAYELVVTARDGGSPS 434
DRD G NG VTCSLTP VPFKLVSTFKNYYSLVLDSALDRESVSAYELVVTARDGGSPS
Sbjct: 375 FDRDFGVNGQVTCSLTPRVPFKLVSTFKNYYSLVLDSALDRESVSAYELVVTARDGGSPS 434
Query: 435 LWATTSVSIEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAWDADAQENALVSYSL 494
LWAT SVS+EVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSA DADAQ+NALVSYSL
Sbjct: 435 LWATASVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAGDADAQKNALVSYSL 494
Query: 495 VERRVGERALSSYVSVHAESGKVYALQPLDHEEVELLQFQVSARDAGVPPLGSNVTLQVF 554
VE RVGERALSSYVSVHAESGKVYALQPLDHEE+ELLQFQVSARDAGVPPLGSNVTLQVF
Sbjct: 495 VELRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDAGVPPLGSNVTLQVF 554
Query: 555 VLDENDNAPALLAPRAGTAAGAVSELVPWSVGAGHVVAKVRAVDADSGYNAWLSYELQLG 614
VLDENDNAPALLAPR G GAV ELVP SVGAGHVVAKVRAVDADSGYNAWLSYELQ
Sbjct: 555 VLDENDNAPALLAPRVGGTGGAVRELVPRSVGAGHVVAKVRAVDADSGYNAWLSYELQPV 614
Query: 615 TGSARIPFRVGLYTGEISTTRALDEADSPRHRLLVLVKDHGEPALTATATVLVSLVESGQ 674
A IPFRVGLYTGEISTTRALDE D+PRHRLLVLVKDHGEP+LTATATVLVSLVESGQ
Sbjct: 615 AAGASIPFRVGLYTGEISTTRALDETDAPRHRLLVLVKDHGEPSLTATATVLVSLVESGQ 674
Query: 675 APKASSRAWVGAAGSEATLVDVNVYLIIAICAVSSLLVLTVLLYTALRCSVPPTEGARAP 734
APKASSRA +G AG E LVDVNVYLIIAICAVSSLLVLT+LLYTALRCS P +EGA +
Sbjct: 675 APKASSRASLGIAGPETELVDVNVYLIIAICAVSSLLVLTLLLYTALRCSAPSSEGACSL 734
Query: 735 GKPTLVCSSAVGSWSYSQQRRQRVCSGEDPPKTDLMAFSPSLSQGPDSAE 784
KPTLVCSSAVGSWS+SQQRRQRVCSGE PPKTDLMAFSPSL QGP S +
Sbjct: 735 VKPTLVCSSAVGSWSFSQQRRQRVCSGEGPPKTDLMAFSPSLPQGPSSTD 784
>gi|14165422 protocadherin alpha 8 isoform 2 precursor [Homo
sapiens]
Length = 814
Score = 1179 bits (3050), Expect = 0.0
Identities = 602/783 (76%), Positives = 667/783 (85%), Gaps = 3/783 (0%)
Query: 10 GAWTRLLSLLLLAAWEVGSGQLRYSVPEEAKHGTFVGRIAQDLGLELEELVPRLFRVASK 69
G+W LL LLLLAAW+VGSGQL YSVPEEAKHGTFVGRIAQDLGLEL ELVPRLFRVASK
Sbjct: 10 GSWRLLLLLLLLAAWKVGSGQLHYSVPEEAKHGTFVGRIAQDLGLELAELVPRLFRVASK 69
Query: 70 RHGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHVEVIVDRPLQVFHVEVEVKDINDN 129
RH DLLEV+LQNGILFVNSRIDREELCGRSAECSIH+EVIVDRPLQVFHV+VEVKD+NDN
Sbjct: 70 RHRDLLEVSLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVDVEVKDVNDN 129
Query: 130 PPIFPMTVKTIRFPESRLLDSRFPLEGASDADIGVNALLSYKLSSSEFFFLDIQANDELS 189
PP+F + + + ESR+ DSRFPLEGASDAD+G N++L+Y+LSS ++F LD+ + ++ +
Sbjct: 130 PPVFRVKDQKLFVSESRMPDSRFPLEGASDADVGANSVLTYRLSSHDYFMLDVNSKNDEN 189
Query: 190 ESLSLVLGKSLDREETAEVNLLLVATDGGKPELTGTVQILIKVLDVNDNEPTFAQSVYKV 249
+ + LVL KSLDRE+ +L L ATDGGKPELTGTVQ+L+ VLDVNDN PTF QS Y+V
Sbjct: 190 KLVELVLRKSLDREDAPAHHLFLTATDGGKPELTGTVQLLVTVLDVNDNAPTFEQSEYEV 249
Query: 250 KLLENTANGTLVVKLNASDADEGPNSEIVYSLGSDVSSTIQTKFTIDPISGEIRTKGKLD 309
++ EN NGT V+KLNASD DEG N I YS S V + + F+ID +GEI +G LD
Sbjct: 250 RIFENADNGTTVIKLNASDPDEGANGAISYSFNSLVETMVIDHFSIDRNTGEIVIRGNLD 309
Query: 310 YEEAKSYEIQVTATDKGTPSMSGHCKISLKLVDINDNTPEVSITSLSLPISENASLGTVI 369
+E+ Y+I + ATDKG P M+GHC + ++++D NDN PE+++TSLSLP+ E+A GTVI
Sbjct: 310 FEQENLYKILIDATDKGHPPMAGHCTVLVRILDKNDNVPEIALTSLSLPVREDAQFGTVI 369
Query: 370 ALITVSDRDSGTNGHVTCSLTPHVPFKLVSTFKNYYSLVLDSALDRESVSAYELVVTARD 429
ALI+V+D DSG NG VTCSL PHVPFKLVSTFKNYYSLVLDSALDRE VSAYELVVTARD
Sbjct: 370 ALISVNDLDSGANGQVTCSLMPHVPFKLVSTFKNYYSLVLDSALDRERVSAYELVVTARD 429
Query: 430 GGSPSLWATTSVSIEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAWDADAQENAL 489
GGSPSLWAT S+S+EVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSA DADAQENAL
Sbjct: 430 GGSPSLWATASLSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSARDADAQENAL 489
Query: 490 VSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEEVELLQFQVSARDAGVPPLGSNV 549
VSYSLVERRVGER+LSSY+SVH ESGKVYALQPLDHEE+ELLQFQVSARDAGVPPLGSNV
Sbjct: 490 VSYSLVERRVGERSLSSYISVHTESGKVYALQPLDHEELELLQFQVSARDAGVPPLGSNV 549
Query: 550 TLQVFVLDENDNAPALLAPRAGTAAGAVSELVPWSVGAGHVVAKVRAVDADSGYNAWLSY 609
TLQVFVLDENDNAPALL PR G GA S+LVP SVGAGHVVAKVRAVDADSGYNAWLSY
Sbjct: 550 TLQVFVLDENDNAPALLEPRVGGTGGAASKLVPRSVGAGHVVAKVRAVDADSGYNAWLSY 609
Query: 610 ELQLGTGSARIPFRVGLYTGEISTTRALDEADSPRHRLLVLVKDHGEPALTATATVLVSL 669
ELQ S RIPFRVGLYTGEISTTR LDEADSPRHRLLVLVKDHGEPALTATATVLVSL
Sbjct: 610 ELQPAASSPRIPFRVGLYTGEISTTRVLDEADSPRHRLLVLVKDHGEPALTATATVLVSL 669
Query: 670 VESGQAPKASSRAWVGAAGSEATLVDVNVYLIIAICAVSSLLVLTVLLYTALRCSVPPTE 729
VESGQAPKASSR G G EA LVDVNVYLIIAICAVSSLLVLT+LLYTALRCS PTE
Sbjct: 670 VESGQAPKASSRQSAGVLGPEAALVDVNVYLIIAICAVSSLLVLTLLLYTALRCSALPTE 729
Query: 730 GARAPGKPTLVCSSAVGSWSYSQQRRQRVCSGEDPPKTDLMAFSPSLSQ---GPDSAEEK 786
G GKPTLVCSSAVGSWSYSQQ+ QRVCSGE PPKTDLMAFSP L D EE+
Sbjct: 730 GGCRAGKPTLVCSSAVGSWSYSQQQPQRVCSGEGPPKTDLMAFSPCLPPDLGSVDVGEEQ 789
Query: 787 QLS 789
L+
Sbjct: 790 DLN 792
>gi|14165392 protocadherin alpha 12 isoform 2 precursor [Homo
sapiens]
Length = 792
Score = 1176 bits (3043), Expect = 0.0
Identities = 610/770 (79%), Positives = 662/770 (85%)
Query: 7 RGRGAWTRLLSLLLLAAWEVGSGQLRYSVPEEAKHGTFVGRIAQDLGLELEELVPRLFRV 66
RG G+ LLSLLLLAAWEVGSGQL YSV EEAKHGTFVGRIAQDLGLEL ELVPRLFRV
Sbjct: 7 RGPGSQRLLLSLLLLAAWEVGSGQLHYSVYEEAKHGTFVGRIAQDLGLELAELVPRLFRV 66
Query: 67 ASKRHGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHVEVIVDRPLQVFHVEVEVKDI 126
ASKRHGDLLEVNLQNGILFVNSRIDRE+LCGRSAECSIH+EVIVDRPLQVFHV+VEVKDI
Sbjct: 67 ASKRHGDLLEVNLQNGILFVNSRIDREKLCGRSAECSIHLEVIVDRPLQVFHVDVEVKDI 126
Query: 127 NDNPPIFPMTVKTIRFPESRLLDSRFPLEGASDADIGVNALLSYKLSSSEFFFLDIQAND 186
NDNPP+F + + ES LDS FPLEGASDADIGVN+LL+Y LS +E F L I+
Sbjct: 127 NDNPPVFREREQKVPVSESAPLDSHFPLEGASDADIGVNSLLTYALSLNENFELKIKTKK 186
Query: 187 ELSESLSLVLGKSLDREETAEVNLLLVATDGGKPELTGTVQILIKVLDVNDNEPTFAQSV 246
+ S LVL K LDRE+T ++NLLL+ DGGKPELTG+VQI I VLDVNDN P F +
Sbjct: 187 DKSILPELVLRKLLDREQTPKLNLLLMVIDGGKPELTGSVQIQITVLDVNDNGPAFDKPS 246
Query: 247 YKVKLLENTANGTLVVKLNASDADEGPNSEIVYSLGSDVSSTIQTKFTIDPISGEIRTKG 306
YKV L EN N T V++LNASD DEG N EI Y + + + + F+I+P +GEIR G
Sbjct: 247 YKVVLSENVQNDTRVIQLNASDPDEGLNGEISYGIKMILPVSEKCMFSINPDTGEIRIYG 306
Query: 307 KLDYEEAKSYEIQVTATDKGTPSMSGHCKISLKLVDINDNTPEVSITSLSLPISENASLG 366
+LD+EE +YEIQV A DKG PSM+GH + ++++D+NDN PEV +TSLSLP+ E+A +G
Sbjct: 307 ELDFEENNAYEIQVNAIDKGIPSMAGHSMVLVEVLDVNDNVPEVMVTSLSLPVQEDAQVG 366
Query: 367 TVIALITVSDRDSGTNGHVTCSLTPHVPFKLVSTFKNYYSLVLDSALDRESVSAYELVVT 426
TVIALI+VSDRDSG NG V CSLTPHVPFKLVST+KNYYSLVLDSALDRESVSAYELVVT
Sbjct: 367 TVIALISVSDRDSGANGQVICSLTPHVPFKLVSTYKNYYSLVLDSALDRESVSAYELVVT 426
Query: 427 ARDGGSPSLWATTSVSIEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAWDADAQE 486
ARDGGSPSLWAT VS+EVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAWDADAQ+
Sbjct: 427 ARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAWDADAQK 486
Query: 487 NALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEEVELLQFQVSARDAGVPPLG 546
NALVSYSLVERRVGE ALSSYVSVHAESGKVYALQPLDHEE+ELLQFQVSARDAGVPPLG
Sbjct: 487 NALVSYSLVERRVGEHALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDAGVPPLG 546
Query: 547 SNVTLQVFVLDENDNAPALLAPRAGTAAGAVSELVPWSVGAGHVVAKVRAVDADSGYNAW 606
SNVTLQVFVLDENDNAPALLA AG+A GAVSELVP SVGAGHVVAKVRAVDADSGYNAW
Sbjct: 547 SNVTLQVFVLDENDNAPALLATPAGSAGGAVSELVPRSVGAGHVVAKVRAVDADSGYNAW 606
Query: 607 LSYELQLGTGSARIPFRVGLYTGEISTTRALDEADSPRHRLLVLVKDHGEPALTATATVL 666
LSYELQ A IPF VGLYTGEISTTR LDEAD+PRHRLLVLVKDHGEPALT+TATVL
Sbjct: 607 LSYELQPAAVGAHIPFHVGLYTGEISTTRILDEADAPRHRLLVLVKDHGEPALTSTATVL 666
Query: 667 VSLVESGQAPKASSRAWVGAAGSEATLVDVNVYLIIAICAVSSLLVLTVLLYTALRCSVP 726
VSLVE+GQAPK SSRA VGA EA LVD+NVYLIIAICAVSSLLVLT+LLYTALRCS P
Sbjct: 667 VSLVENGQAPKTSSRASVGAVDPEAALVDINVYLIIAICAVSSLLVLTLLLYTALRCSAP 726
Query: 727 PTEGARAPGKPTLVCSSAVGSWSYSQQRRQRVCSGEDPPKTDLMAFSPSL 776
PT APGKPTLVCSSAVGSWSYSQQRRQRVCS E PPKTDLMAFSPSL
Sbjct: 727 PTVSRCAPGKPTLVCSSAVGSWSYSQQRRQRVCSAESPPKTDLMAFSPSL 776
>gi|7662068 protocadherin alpha 9 isoform 2 precursor [Homo sapiens]
Length = 842
Score = 1170 bits (3026), Expect = 0.0
Identities = 605/784 (77%), Positives = 671/784 (85%), Gaps = 2/784 (0%)
Query: 15 LLSLLLLAAWEVGSGQLRYSVPEEAKHGTFVGRIAQDLGLELEELVPRLFRVASKRHGDL 74
LLSLL+LA W VGSGQL YSVPEEA+HGTFVGRIAQDLGLEL ELVPRLF++ SK GDL
Sbjct: 15 LLSLLILAMWVVGSGQLHYSVPEEAEHGTFVGRIAQDLGLELAELVPRLFQLDSKGRGDL 74
Query: 75 LEVNLQNGILFVNSRIDREELCGRSAECSIHVEVIVDRPLQVFHVEVEVKDINDNPPIFP 134
LEVNLQNGILFVNSRIDREELCGRSAECSIH+EVIVDRPLQVFHV+VEVKDINDNPP+FP
Sbjct: 75 LEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVDVEVKDINDNPPVFP 134
Query: 135 MTVKTIRFPESRLLDSRFPLEGASDADIGVNALLSYKLSSSEFFFLDIQANDELSESLSL 194
T K + ESR LDSRFPLEGASDADIG NALL+Y+LS +E+FFLD+ +++ + L L
Sbjct: 135 ATQKNLFIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYFFLDVPTSNQQVKPLGL 194
Query: 195 VLGKSLDREETAEVNLLLVATDGGKPELTGTVQILIKVLDVNDNEPTFAQSVYKVKLLEN 254
VL K LDREET E++LLL ATDGGKPELTGTVQ+LI VLD NDN P F +++Y VKL EN
Sbjct: 195 VLRKLLDREETPELHLLLTATDGGKPELTGTVQLLITVLDNNDNAPVFDRTLYTVKLPEN 254
Query: 255 TANGTLVVKLNASDADEGPNSEIVYSLGSDVSSTIQTKFTIDPISGEIRTKGKLDYEEAK 314
+ GTLV+ NASD DEG N +I+YS SDVS I++KF +DP+SG I G +D+EE++
Sbjct: 255 VSIGTLVIHPNASDLDEGLNGDIIYSFSSDVSPDIKSKFHMDPLSGAITVIGHMDFEESR 314
Query: 315 SYEIQVTATDKGTPSMSGHCKISLKLVDINDNTPEVSITSLSLPISENASLGTVIALITV 374
+++I V A DKG P ++GHC + +++VD+NDN P+++I +LS+P+ E+A LGTVIALI+V
Sbjct: 315 AHKIPVEAVDKGFPPLAGHCTLLVEVVDVNDNAPQLTIKTLSVPVKEDAQLGTVIALISV 374
Query: 375 SDRDSGTNGHVTCSLTPHVPFKLVSTFKNYYSLVLDSALDRESVSAYELVVTARDGGSPS 434
D D+ NG VTCSLTPHVPFKLVST+KNYYSLVLD ALDRESVSAYELVVTARDGGSPS
Sbjct: 375 IDLDADANGQVTCSLTPHVPFKLVSTYKNYYSLVLDRALDRESVSAYELVVTARDGGSPS 434
Query: 435 LWATTSVSIEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAWDADAQENALVSYSL 494
LWAT VS+EVADVNDNAPAFAQ EYTVFVKENNPPGCHIFTVSA DADAQENALVSYSL
Sbjct: 435 LWATARVSVEVADVNDNAPAFAQSEYTVFVKENNPPGCHIFTVSARDADAQENALVSYSL 494
Query: 495 VERRVGERALSSYVSVHAESGKVYALQPLDHEEVELLQFQVSARDAGVPPLGSNVTLQVF 554
VERR+GER+LSSYVSVHAESGKVYALQPLDHEE+ELLQFQVSARDAGVPPLGSNVTLQVF
Sbjct: 495 VERRLGERSLSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDAGVPPLGSNVTLQVF 554
Query: 555 VLDENDNAPALLAPRAGTAAGAVSELVPWSVGAGHVVAKVRAVDADSGYNAWLSYELQLG 614
VLDENDNAPALL PR GAVSE+V SVGAG VV KVRAVDADSGYNAWLSYELQ
Sbjct: 555 VLDENDNAPALLTPRMRGTDGAVSEMVLRSVGAGVVVGKVRAVDADSGYNAWLSYELQPE 614
Query: 615 TGSARIPFRVGLYTGEISTTRALDEADSPRHRLLVLVKDHGEPALTATATVLVSLVESGQ 674
T SA IPFRVGLYTGEISTTRALDE D+PR RLLVLVKDHGEPALTATATVLVSLVESGQ
Sbjct: 615 TASASIPFRVGLYTGEISTTRALDETDAPRQRLLVLVKDHGEPALTATATVLVSLVESGQ 674
Query: 675 APKASSRAWVGAAGSEATLVDVNVYLIIAICAVSSLLVLTVLLYTALRCSVPPTEGARAP 734
APK+SSRA VGA G E TLVDVNVYLIIAICAVSSLLVLT+LLYT LRCS PTEG AP
Sbjct: 675 APKSSSRASVGATGPEVTLVDVNVYLIIAICAVSSLLVLTLLLYTVLRCSAMPTEGECAP 734
Query: 735 GKPTLVCSSAVGSWSYSQQRRQRVCSGEDPPKTDLMAFSPSLSQGPDSAEE--KQLSESE 792
GKPTLVCSSAVGSWSYSQQRRQRVCSGE KTDLMAFSP LS S E + + S+
Sbjct: 735 GKPTLVCSSAVGSWSYSQQRRQRVCSGEGKQKTDLMAFSPGLSPCAGSTERTGEPSASSD 794
Query: 793 YVGK 796
GK
Sbjct: 795 STGK 798
>gi|14165381 protocadherin alpha 10 isoform 2 precursor [Homo
sapiens]
Length = 844
Score = 1167 bits (3018), Expect = 0.0
Identities = 606/771 (78%), Positives = 658/771 (85%), Gaps = 1/771 (0%)
Query: 10 GAWTRLLSLLLLAAWEVGSGQLRYSVPEEAKHGTFVGRIAQDLGLELEELVPRLFRVASK 69
G LLSLLLLAAWEVGSGQL YSV EEA+HGTFVGRIAQDLGLEL ELV RLFRVASK
Sbjct: 9 GVQCLLLSLLLLAAWEVGSGQLHYSVYEEARHGTFVGRIAQDLGLELAELVQRLFRVASK 68
Query: 70 RHGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHVEVIVDRPLQVFHVEVEVKDINDN 129
RHGDLLEVNLQNGILFVNSRIDREELCGRS ECSIH+EVIVDRPLQVFHV+VEVKDINDN
Sbjct: 69 RHGDLLEVNLQNGILFVNSRIDREELCGRSVECSIHLEVIVDRPLQVFHVDVEVKDINDN 128
Query: 130 PPIFPMTVKTIRFPESRLLDSRFPLEGASDADIGVNALLSYKLSSSEFFFLDIQANDELS 189
PP F +T + + PESRLLDSRFPLEGASDAD+G NALL+YKLS +E+F LDI +
Sbjct: 129 PPRFSVTEQKLSIPESRLLDSRFPLEGASDADVGENALLTYKLSPNEYFVLDIINKKDKD 188
Query: 190 ESLSLVLGKSLDREETAEVNLLLVATDGGKPELTGTVQILIKVLDVNDNEPTFAQSVYKV 249
+ LVL K LDREE ++ LLL ATDGGKPE TG+V +LI VLD NDN P F + VY+V
Sbjct: 189 KFPVLVLRKLLDREENPQLKLLLTATDGGKPEFTGSVSLLILVLDANDNAPIFDRPVYEV 248
Query: 250 KLLENTANGTLVVKLNASDADEGPNSEIVYSLGSDVSSTIQTKFTIDPISGEIRTKGKLD 309
K+ EN N TLV++LNASD+DEG N E++YS S V TI+ KF I+ +GEI+ +D
Sbjct: 249 KMYENQVNQTLVIRLNASDSDEGINKEMMYSFSSLVPPTIRRKFWINERTGEIKVNDAID 308
Query: 310 YEEAKSYEIQVTATDKGTPSMSGHCKISLKLVDINDNTPEVSITSLSLPISENASLGTVI 369
+E++ +YEI V TDKG P M GHC + ++L+D NDN+PEV +TSLSLP+ E+A +GTVI
Sbjct: 309 FEDSNTYEIHVDVTDKGNPPMVGHCTVLVELLDENDNSPEVIVTSLSLPVKEDAQVGTVI 368
Query: 370 ALITVSDRDSGTNGHVTCSLTPHVPFKLVSTFKNYYSLVLDSALDRESVSAYELVVTARD 429
ALI+VSD DSG NG VTCSLTPHVPFKLVST+KNYYSLVLDSALDRE VSAYELVVTARD
Sbjct: 369 ALISVSDHDSGANGQVTCSLTPHVPFKLVSTYKNYYSLVLDSALDRERVSAYELVVTARD 428
Query: 430 GGSPSLWATTSVSIEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAWDADAQENAL 489
GGSP LWAT SVS+EVADVNDNAPAFAQ EYTVFVKENNPPGCHIFTVSAWDADAQENAL
Sbjct: 429 GGSPPLWATASVSVEVADVNDNAPAFAQSEYTVFVKENNPPGCHIFTVSAWDADAQENAL 488
Query: 490 VSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEEVELLQFQVSARDAGVPPLGSNV 549
VSYSLVERR+GER+LSSYVSVHAESGKVYALQPLDHEE+ELLQFQVSARD GVPPLGSN+
Sbjct: 489 VSYSLVERRLGERSLSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDGGVPPLGSNL 548
Query: 550 TLQVFVLDENDNAPALLAPRAGTAAGAVSELVPWSVGAGHVVAKVRAVDADSGYNAWLSY 609
TLQVFVLDENDNAPALLA AG+A GAVSELV SV AGHVVAKVRAVDADSGYNAWLSY
Sbjct: 549 TLQVFVLDENDNAPALLASPAGSAGGAVSELVLRSVVAGHVVAKVRAVDADSGYNAWLSY 608
Query: 610 ELQLGTGSARIPFRVGLYTGEISTTRALDEADSPRHRLLVLVKDHGEPALTATATVLVSL 669
ELQ ARIPFRVGLYTGEISTTRALDE DSPR RLLVLVKDHGEP+LTATATVLVSL
Sbjct: 609 ELQSAAVGARIPFRVGLYTGEISTTRALDETDSPRQRLLVLVKDHGEPSLTATATVLVSL 668
Query: 670 VESGQAPKASSRAWVGAAGSEATLVDVNVYLIIAICAVSSLLVLTVLLYTALRCSVPPTE 729
VE QAPKASSRA VG A E LVDVNVYLIIAICAVSSLLVLT+LLYTALRCS PTE
Sbjct: 669 VEGSQAPKASSRASVGVA-PEVALVDVNVYLIIAICAVSSLLVLTLLLYTALRCSAAPTE 727
Query: 730 GARAPGKPTLVCSSAVGSWSYSQQRRQRVCSGEDPPKTDLMAFSPSLSQGP 780
GA P KPTLVCSSAVGSWSYSQQRRQRVCSGE PK DLMAFSPSL P
Sbjct: 728 GACGPVKPTLVCSSAVGSWSYSQQRRQRVCSGEGLPKADLMAFSPSLPPCP 778
>gi|9256600 protocadherin alpha subfamily C, 2 isoform 1 precursor
[Homo sapiens]
Length = 1007
Score = 872 bits (2252), Expect = 0.0
Identities = 484/990 (48%), Positives = 635/990 (64%), Gaps = 66/990 (6%)
Query: 15 LLSLLLLAAWEVGSGQLRYSVPEEAKHGTFVGRIAQDLGLELEELVPRLFRV-----ASK 69
LL LLLL + QLRYSVPEE G VG +A+ LGLEL L P R+ S
Sbjct: 28 LLLLLLLLLPGPAASQLRYSVPEEQAPGALVGNVARALGLELRRLGPGCLRINHLGAPSP 87
Query: 70 RHGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHVEVIVDRPLQVFHVEVEVKDINDN 129
R+ LE++L +G LFVN RIDRE LC + C + +EV+ P+ V VEVE+ DINDN
Sbjct: 88 RY---LELDLTSGALFVNERIDREALCEQRPRCLLSLEVLAHNPVAVSAVEVEILDINDN 144
Query: 130 PPIFPMTVKTIRFPESRLLDSRFPLEGASDADIGVNALLSYKLSSSEFFFLDIQANDELS 189
P FP ++ ES +RF +E A D D+G N++ +Y+LS SE F LD++ E S
Sbjct: 145 SPRFPRPNYQLQVSESVAPGARFHIESAQDPDVGANSVQTYELSPSEHFELDLKPLQENS 204
Query: 190 ESLSLVLGKSLDREETAEVNLLLVATDGGKPELTGTVQILIKVLDVNDNEPTFAQSVYKV 249
+ L LVL K LDRE+ A +L+L A DGG P +GT QI ++VLD NDN P F QS Y+V
Sbjct: 205 KVLELVLRKGLDREQAALHHLVLTAVDGGIPARSGTAQISVRVLDTNDNSPAFDQSTYRV 264
Query: 250 KLLENTANGTLVVKLNASDADEGPNSEIVYSLGSDVSSTIQTKFTIDPISGEIRTKGKLD 309
+L E++ GTLVVKLNASD DEG N E+ YSL S S + F+ID +GE+R G LD
Sbjct: 265 QLREDSPPGTLVVKLNASDPDEGSNGELRYSLSSYTSDRERQLFSIDASTGEVRVIGGLD 324
Query: 310 YEEAKSYEIQVTATDKGTPSMSGHCKISLKLVDINDNTPEVSITSLSLPISENASLGTVI 369
YEEA SY+I V ATD+G M+GHCK+ + +VD+NDN PEV +T L P+ ENA+ T++
Sbjct: 325 YEEASSYQIYVQATDRGPVPMAGHCKVLVDIVDVNDNAPEVVLTDLYSPVPENATPNTIV 384
Query: 370 ALITVSDRDSGTNGHVTCSLTPHVPFKLVSTFKNYYSLVLDSALDRESVSAYELVVTARD 429
A+++V+D+DSG N V+ L +PF+L + F N Y+LV+ LDRE V+ Y + VTA D
Sbjct: 385 AVLSVNDQDSGPNRKVSLGLEATLPFRL-NGFGNSYTLVVSGPLDRERVAVYNITVTATD 443
Query: 430 GGSPSLWATTSVSIEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAWDADAQENAL 489
GG P L + ++ +E++D+NDN P+F + Y+++++ENN PG + TV A D D +ENA
Sbjct: 444 GGIPQLTSLRTLKVEISDINDNPPSFLEDSYSIYIQENNLPGVLLCTVQATDPDEKENAE 503
Query: 490 VSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEEVELLQFQVSARDAGVPPLGSNV 549
V+YSL+ER + ++SYVS+++ SG +YA+ D+E+ V A+D G PPL S V
Sbjct: 504 VTYSLLEREIQGLPVTSYVSINSASGSLYAVNSFDYEKFREFFVTVEAQDKGSPPLSSTV 563
Query: 550 TLQVFVLDENDNAPALLAPRAGTAAGAVSELVPWSVGAGHVVAKVRAVDADSGYNAWLSY 609
T V+V+D ND+AP +L P T + A E+VP + AG++V KV A+D+DSG NAWL Y
Sbjct: 564 TANVYVVDMNDHAPHILYP-TSTNSSAAFEMVPRTAPAGYLVTKVIAMDSDSGQNAWLFY 622
Query: 610 ELQLGTGSARIPFRVGLYTGEISTTRALDEADSPRHRLLVLVKDHGEPALTATATVLVSL 669
L S F+V L+TGEI TTR + + L V+V+D+GEP+L+A+ + V++
Sbjct: 623 --HLAQTSDLDLFKVELHTGEIRTTRKMGDESGSTFNLTVVVRDNGEPSLSASVAITVAV 680
Query: 670 VESGQAPKASSRAWVGAAGSEATLVDVNVYLIIAICAVSSLLVLTVLLYTALRCSVPPTE 729
V+ ++ V S T ++ +YLIIA+ VS + +LT+++ + ++C
Sbjct: 681 VDRVSKILPDTQRHV---KSPRTYSEITLYLIIALSTVSFIFLLTIIILSIIKCYRYTAY 737
Query: 730 GA-----------RAPGKPTLVCSSAV------------------GSWSYSQQRRQRVCS 760
G R+P + ++ + G+ S ++ + C
Sbjct: 738 GTACCGGFCGVRERSPAELYKQANNNIDARIPHGLKVQPHFIEVRGNGSLTKTYCYKACL 797
Query: 761 GEDPPKTDLMAFSPSLSQGP-DSAEEKQLSESEYV---------------------GKPR 798
M ++ GP S + +++S + +PR
Sbjct: 798 TAGSGSDTFMFYNTGAQTGPGPSGAQAAVTDSRNLTGQSGQNAGNLIILKNEAVSQNEPR 857
Query: 799 QPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPTVSSATPEPEAGEVSPPVGA 858
QPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPTVSSATPEPEAGEVSPPVGA
Sbjct: 858 QPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPTVSSATPEPEAGEVSPPVGA 917
Query: 859 GVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIRQEPTNSQIDKSDFITFGKKE 918
GVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIRQEPTNSQIDKSDFITFGKKE
Sbjct: 918 GVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIRQEPTNSQIDKSDFITFGKKE 977
Query: 919 ETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ 948
ETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
Sbjct: 978 ETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ 1007
>gi|14165402 protocadherin alpha 1 isoform 3 precursor [Homo
sapiens]
Length = 686
Score = 817 bits (2110), Expect = 0.0
Identities = 419/534 (78%), Positives = 460/534 (86%)
Query: 1 MASSIRRGRGAWTRLLSLLLLAAWEVGSGQLRYSVPEEAKHGTFVGRIAQDLGLELEELV 60
M S R G GA LL LLLLAAWEVGSGQL YS+PEEAKHGTFVGR+AQDLGLEL ELV
Sbjct: 1 MVFSRRGGLGARDLLLWLLLLAAWEVGSGQLHYSIPEEAKHGTFVGRVAQDLGLELAELV 60
Query: 61 PRLFRVASKRHGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHVEVIVDRPLQVFHVE 120
PRLFRVASK H DLLEVNLQNGILFVNSRIDREELC SAECSIH+E+I DRPLQVFHVE
Sbjct: 61 PRLFRVASKTHRDLLEVNLQNGILFVNSRIDREELCQWSAECSIHLELIADRPLQVFHVE 120
Query: 121 VEVKDINDNPPIFPMTVKTIRFPESRLLDSRFPLEGASDADIGVNALLSYKLSSSEFFFL 180
V+VKDINDNPP+F + I PESRLL+SRFP+EGA+DADIG NALL+Y LS S++F L
Sbjct: 121 VKVKDINDNPPVFRGREQIIFIPESRLLNSRFPIEGAADADIGANALLTYTLSPSDYFSL 180
Query: 181 DIQANDELSESLSLVLGKSLDREETAEVNLLLVATDGGKPELTGTVQILIKVLDVNDNEP 240
D++A+DELS+SL L L K LDREET E++LLL ATDGGKPEL GTV++LI VLDVNDN P
Sbjct: 181 DVEASDELSKSLWLELRKYLDREETPELHLLLTATDGGKPELQGTVELLITVLDVNDNAP 240
Query: 241 TFAQSVYKVKLLENTANGTLVVKLNASDADEGPNSEIVYSLGSDVSSTIQTKFTIDPISG 300
F Q+VY+V LLE TANGTLV LNASDADEG N E+V+S S +S IQ KF +D SG
Sbjct: 241 LFDQAVYRVHLLETTANGTLVTTLNASDADEGVNGEVVFSFDSGISRDIQEKFKVDSSSG 300
Query: 301 EIRTKGKLDYEEAKSYEIQVTATDKGTPSMSGHCKISLKLVDINDNTPEVSITSLSLPIS 360
EIR KLDYEE KSYEIQV A DKG+P MS HCK+ +K++D+NDN PE+++TSL LPI
Sbjct: 301 EIRLIDKLDYEETKSYEIQVKAVDKGSPPMSNHCKVLVKVLDVNDNAPELAVTSLYLPIR 360
Query: 361 ENASLGTVIALITVSDRDSGTNGHVTCSLTPHVPFKLVSTFKNYYSLVLDSALDRESVSA 420
E+A L TVIALITVSDRDSG NG VTCSL PHVPFKLVSTFKNYYSLVLDSALDRES+S
Sbjct: 361 EDAPLSTVIALITVSDRDSGANGQVTCSLMPHVPFKLVSTFKNYYSLVLDSALDRESLSV 420
Query: 421 YELVVTARDGGSPSLWATTSVSIEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAW 480
YELVVTARDGGSPSLWAT VS+EVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSA
Sbjct: 421 YELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAR 480
Query: 481 DADAQENALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEEVELLQFQ 534
DADAQENALVSYSLVERRVGERALS+YVSVHAESGKVYALQPLDHEE+ELLQFQ
Sbjct: 481 DADAQENALVSYSLVERRVGERALSNYVSVHAESGKVYALQPLDHEELELLQFQ 534
Score = 430 bits (1106), Expect = e-120
Identities = 279/623 (44%), Positives = 345/623 (55%), Gaps = 65/623 (10%)
Query: 336 ISLKLVDINDNTPEVSITSLSLPISENASLGTVIALITVSDRDSGTNGHVTCSLTPHVPF 395
+ +K+ DINDN P + I E+ L + + +D D G N +T +L+P F
Sbjct: 119 VEVKVKDINDNPPVFRGREQIIFIPESRLLNSRFPIEGAADADIGANALLTYTLSPSDYF 178
Query: 396 KLVSTFKNYYS----LVLDSALDRESVSAYELVVTARDGGSPSLWATTSVSIEVADVNDN 451
L + S L L LDRE L++TA DGG P L T + I V DVNDN
Sbjct: 179 SLDVEASDELSKSLWLELRKYLDREETPELHLLLTATDGGKPELQGTVELLITVLDVNDN 238
Query: 452 APAFAQPEYTVFVKENNPPGCHIFTVSAWDADAQENALVSYSL---VERRVGERALSSYV 508
AP F Q Y V + E G + T++A DAD N V +S + R + E+
Sbjct: 239 APLFDQAVYRVHLLETTANGTLVTTLNASDADEGVNGEVVFSFDSGISRDIQEK-----F 293
Query: 509 SVHAESGKVYALQPLDHEEVELLQFQVSARDAGVPPLGSNVTLQVFVLDENDNAPALLAP 568
V + SG++ + LD+EE + + QV A D G PP+ ++ + V VLD NDNAP L
Sbjct: 294 KVDSSSGEIRLIDKLDYEETKSYEIQVKAVDKGSPPMSNHCKVLVKVLDVNDNAPELAVT 353
Query: 569 RAGTAAGAVSELVPWSVGAGHVVAKVRAVDADSGYNAWLSYELQLGTGSARIPFR-VGLY 627
+ + E P S V+A + D DSG N ++ L +PF+ V +
Sbjct: 354 ---SLYLPIREDAPLST----VIALITVSDRDSGANGQVTCSLM-----PHVPFKLVSTF 401
Query: 628 TGEISTT--RALDEADSPRHRLLVLVKDHGEPALTATATVLVSLVESGQAPKASSRAWVG 685
S ALD + L+V +D G P+L ATA V V + + A ++
Sbjct: 402 KNYYSLVLDSALDRESLSVYELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYT 461
Query: 686 AAGSEATLVDVNVYLIIAICAVSSLLVLTVLLYTALRCSVPPTEGARAPGKPTLVCSSAV 745
E +++ + A A + L + Y+ + V G RA V
Sbjct: 462 VFVKENNPPGCHIFTVSARDADAQENAL--VSYSLVERRV----GERALSNYVSV----- 510
Query: 746 GSWSYSQQRRQRVCSGEDPPKTDLMAFSPSLSQGPDSAEEKQLSESEYVGKPRQPNPDWR 805
+++ + D + +L+ F P RQPNPDWR
Sbjct: 511 ----HAESGKVYALQPLDHEELELLQFQP-----------------------RQPNPDWR 543
Query: 806 YSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPTVSSATPEPEAGEVSPPVGAGVNSNSW 865
YSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPTVSSATPEPEAGEVSPPVGAGVNSNSW
Sbjct: 544 YSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPTVSSATPEPEAGEVSPPVGAGVNSNSW 603
Query: 866 TFKYGPGNPKQSGPGELPDKFIIPGSPAIISIRQEPTNSQIDKSDFITFGKKEETKKKKK 925
TFKYGPGNPKQSGPGELPDKFIIPGSPAIISIRQEPTNSQIDKSDFITFGKKEETKKKKK
Sbjct: 604 TFKYGPGNPKQSGPGELPDKFIIPGSPAIISIRQEPTNSQIDKSDFITFGKKEETKKKKK 663
Query: 926 KKKGNKTQEKKEKGNSTTDNSDQ 948
KKKGNKTQEKKEKGNSTTDNSDQ
Sbjct: 664 KKKGNKTQEKKEKGNSTTDNSDQ 686
Score = 151 bits (381), Expect = 3e-36
Identities = 124/429 (28%), Positives = 200/429 (46%), Gaps = 29/429 (6%)
Query: 194 LVLGKSLDREETAE------VNLLLVATDGGKPELTGTVQILIKVLDVNDNEPTFAQSVY 247
L + +DREE + ++L L+A +P V++ KV D+NDN P F
Sbjct: 84 LFVNSRIDREELCQWSAECSIHLELIAD---RPLQVFHVEV--KVKDINDNPPVFRGREQ 138
Query: 248 KVKLLENTANGTLVVKLNASDADEGPNSEIVYSLGSDVSSTIQTKFTIDPISGEI--RTK 305
+ + E+ + A+DAD G N+ + Y+L ++ + + D +S + +
Sbjct: 139 IIFIPESRLLNSRFPIEGAADADIGANALLTYTLSPSDYFSLDVEAS-DELSKSLWLELR 197
Query: 306 GKLDYEEAKSYEIQVTATDKGTPSMSGHCKISLKLVDINDNTPEVSITSLSLPISENASL 365
LD EE + +TATD G P + G ++ + ++D+NDN P + + E +
Sbjct: 198 KYLDREETPELHLLLTATDGGKPELQGTVELLITVLDVNDNAPLFDQAVYRVHLLETTAN 257
Query: 366 GTVIALITVSDRDSGTNGHVTCSLTPHVPFKLVSTFKNYYS---LVLDSALDRESVSAYE 422
GT++ + SD D G NG V S + + FK S + L LD E +YE
Sbjct: 258 GTLVTTLNASDADEGVNGEVVFSFDSGISRDIQEKFKVDSSSGEIRLIDKLDYEETKSYE 317
Query: 423 LVVTARDGGSPSLWATTSVSIEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAWDA 482
+ V A D GSP + V ++V DVNDNAP A + ++E+ P I ++ D
Sbjct: 318 IQVKAVDKGSPPMSNHCKVLVKVLDVNDNAPELAVTSLYLPIREDAPLSTVIALITVSDR 377
Query: 483 DAQENALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEEVELLQFQVSARDAGV 542
D+ N V+ SL+ V + +S++ + ++ + LD E + + + V+ARD G
Sbjct: 378 DSGANGQVTCSLMPH-VPFKLVSTFKNYYS----LVLDSALDRESLSVYELVVTARDGGS 432
Query: 543 PPLGSNVTLQVFVLDENDNAPALLAPRAGTAAGAVSELVPWSVGAGHVVAKVRAVDADSG 602
P L + + V V D NDNAPA P + V + G + V A DAD+
Sbjct: 433 PSLWATARVSVEVADVNDNAPAFAQPE-------YTVFVKENNPPGCHIFTVSARDADAQ 485
Query: 603 YNAWLSYEL 611
NA +SY L
Sbjct: 486 ENALVSYSL 494
>gi|14165383 protocadherin alpha 10 isoform 3 precursor [Homo
sapiens]
Length = 685
Score = 783 bits (2021), Expect = 0.0
Identities = 397/525 (75%), Positives = 445/525 (84%)
Query: 10 GAWTRLLSLLLLAAWEVGSGQLRYSVPEEAKHGTFVGRIAQDLGLELEELVPRLFRVASK 69
G LLSLLLLAAWEVGSGQL YSV EEA+HGTFVGRIAQDLGLEL ELV RLFRVASK
Sbjct: 9 GVQCLLLSLLLLAAWEVGSGQLHYSVYEEARHGTFVGRIAQDLGLELAELVQRLFRVASK 68
Query: 70 RHGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHVEVIVDRPLQVFHVEVEVKDINDN 129
RHGDLLEVNLQNGILFVNSRIDREELCGRS ECSIH+EVIVDRPLQVFHV+VEVKDINDN
Sbjct: 69 RHGDLLEVNLQNGILFVNSRIDREELCGRSVECSIHLEVIVDRPLQVFHVDVEVKDINDN 128
Query: 130 PPIFPMTVKTIRFPESRLLDSRFPLEGASDADIGVNALLSYKLSSSEFFFLDIQANDELS 189
PP F +T + + PESRLLDSRFPLEGASDAD+G NALL+YKLS +E+F LDI +
Sbjct: 129 PPRFSVTEQKLSIPESRLLDSRFPLEGASDADVGENALLTYKLSPNEYFVLDIINKKDKD 188
Query: 190 ESLSLVLGKSLDREETAEVNLLLVATDGGKPELTGTVQILIKVLDVNDNEPTFAQSVYKV 249
+ LVL K LDREE ++ LLL ATDGGKPE TG+V +LI VLD NDN P F + VY+V
Sbjct: 189 KFPVLVLRKLLDREENPQLKLLLTATDGGKPEFTGSVSLLILVLDANDNAPIFDRPVYEV 248
Query: 250 KLLENTANGTLVVKLNASDADEGPNSEIVYSLGSDVSSTIQTKFTIDPISGEIRTKGKLD 309
K+ EN N TLV++LNASD+DEG N E++YS S V TI+ KF I+ +GEI+ +D
Sbjct: 249 KMYENQVNQTLVIRLNASDSDEGINKEMMYSFSSLVPPTIRRKFWINERTGEIKVNDAID 308
Query: 310 YEEAKSYEIQVTATDKGTPSMSGHCKISLKLVDINDNTPEVSITSLSLPISENASLGTVI 369
+E++ +YEI V TDKG P M GHC + ++L+D NDN+PEV +TSLSLP+ E+A +GTVI
Sbjct: 309 FEDSNTYEIHVDVTDKGNPPMVGHCTVLVELLDENDNSPEVIVTSLSLPVKEDAQVGTVI 368
Query: 370 ALITVSDRDSGTNGHVTCSLTPHVPFKLVSTFKNYYSLVLDSALDRESVSAYELVVTARD 429
ALI+VSD DSG NG VTCSLTPHVPFKLVST+KNYYSLVLDSALDRE VSAYELVVTARD
Sbjct: 369 ALISVSDHDSGANGQVTCSLTPHVPFKLVSTYKNYYSLVLDSALDRERVSAYELVVTARD 428
Query: 430 GGSPSLWATTSVSIEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAWDADAQENAL 489
GGSP LWAT SVS+EVADVNDNAPAFAQ EYTVFVKENNPPGCHIFTVSAWDADAQENAL
Sbjct: 429 GGSPPLWATASVSVEVADVNDNAPAFAQSEYTVFVKENNPPGCHIFTVSAWDADAQENAL 488
Query: 490 VSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEEVELLQFQ 534
VSYSLVERR+GER+LSSYVSVHAESGKVYALQPLDHEE+ELLQFQ
Sbjct: 489 VSYSLVERRLGERSLSSYVSVHAESGKVYALQPLDHEELELLQFQ 533
Score = 414 bits (1063), Expect = e-115
Identities = 273/620 (44%), Positives = 344/620 (55%), Gaps = 59/620 (9%)
Query: 336 ISLKLVDINDNTPEVSITSLSLPISENASLGTVIALITVSDRDSGTNGHVTCSLTPHVPF 395
+ +++ DINDN P S+T L I E+ L + L SD D G N +T L+P+ F
Sbjct: 118 VDVEVKDINDNPPRFSVTEQKLSIPESRLLDSRFPLEGASDADVGENALLTYKLSPNEYF 177
Query: 396 KLVSTFKN----YYSLVLDSALDRESVSAYELVVTARDGGSPSLWATTSVSIEVADVNDN 451
L K + LVL LDRE +L++TA DGG P + S+ I V D NDN
Sbjct: 178 VLDIINKKDKDKFPVLVLRKLLDREENPQLKLLLTATDGGKPEFTGSVSLLILVLDANDN 237
Query: 452 APAFAQPEYTVFVKENNPPGCHIFTVSAWDADAQENALVSYSLVERRVGERALSSYVSVH 511
AP F +P Y V + EN + ++A D+D N + YS + + ++
Sbjct: 238 APIFDRPVYEVKMYENQVNQTLVIRLNASDSDEGINKEMMYSFSS--LVPPTIRRKFWIN 295
Query: 512 AESGKVYALQPLDHEEVELLQFQVSARDAGVPPLGSNVTLQVFVLDENDNAPALLAPRAG 571
+G++ +D E+ + V D G PP+ + T+ V +LDENDN+P ++
Sbjct: 296 ERTGEIKVNDAIDFEDSNTYEIHVDVTDKGNPPMVGHCTVLVELLDENDNSPEVIVT--- 352
Query: 572 TAAGAVSELVPWSVGAGHVVAKVRAVDADSGYNAWLSYELQLGTGSARIPFRVGLYTGEI 631
++S V G V+A + D DSG N ++ L + +PF++ +
Sbjct: 353 ----SLSLPVKEDAQVGTVIALISVSDHDSGANGQVTCSL-----TPHVPFKL------V 397
Query: 632 STTRALDEADSPRHRLLVLVKDHGEPALTATATVLVSLVESGQAPKASSRAWVGAAGSEA 691
ST + LV D +A LV G +P W A+ S
Sbjct: 398 STYK----------NYYSLVLDSALDRERVSAYELVVTARDGGSPPL----WATASVS-V 442
Query: 692 TLVDVNVYLIIAICAVSSLLVLTVLLYTALRCSVPPTEGARAPGKPTLVCSSAVGSWSYS 751
+ DVN A S + V C + A + +A+ S+S
Sbjct: 443 EVADVNDN---APAFAQSEYTVFVKENNPPGCHIFTVSAWDADAQ-----ENALVSYSLV 494
Query: 752 QQRRQRVCSGEDPPKTDLMAFSPS---LSQGPDSAEEKQLSESEYVGKPRQPNPDWRYSA 808
++R GE + + + S + P EE +L + + PRQPNPDWRYSA
Sbjct: 495 ERRL-----GERSLSSYVSVHAESGKVYALQPLDHEELELLQFQ----PRQPNPDWRYSA 545
Query: 809 SLRAGMHSSVHLEEAGILRAGPGGPDQQWPTVSSATPEPEAGEVSPPVGAGVNSNSWTFK 868
SLRAGMHSSVHLEEAGILRAGPGGPDQQWPTVSSATPEPEAGEVSPPVGAGVNSNSWTFK
Sbjct: 546 SLRAGMHSSVHLEEAGILRAGPGGPDQQWPTVSSATPEPEAGEVSPPVGAGVNSNSWTFK 605
Query: 869 YGPGNPKQSGPGELPDKFIIPGSPAIISIRQEPTNSQIDKSDFITFGKKEETKKKKKKKK 928
YGPGNPKQSGPGELPDKFIIPGSPAIISIRQEPTNSQIDKSDFITFGKKEETKKKKKKKK
Sbjct: 606 YGPGNPKQSGPGELPDKFIIPGSPAIISIRQEPTNSQIDKSDFITFGKKEETKKKKKKKK 665
Query: 929 GNKTQEKKEKGNSTTDNSDQ 948
GNKTQEKKEKGNSTTDNSDQ
Sbjct: 666 GNKTQEKKEKGNSTTDNSDQ 685
Score = 147 bits (372), Expect = 4e-35
Identities = 122/425 (28%), Positives = 196/425 (46%), Gaps = 31/425 (7%)
Query: 230 IKVLDVNDNEPTFAQSVYKVKLLENTANGTLVVKLNASDADEGPNSEIVYSLGSDVSSTI 289
++V D+NDN P F+ + K+ + E+ + ASDAD G N+ + Y L +
Sbjct: 120 VEVKDINDNPPRFSVTEQKLSIPESRLLDSRFPLEGASDADVGENALLTYKLSPN----- 174
Query: 290 QTKFTIDPISGEIRTKGK-------LDYEEAKSYEIQVTATDKGTPSMSGHCKISLKLVD 342
F +D I+ + + K LD EE ++ +TATD G P +G + + ++D
Sbjct: 175 -EYFVLDIINKKDKDKFPVLVLRKLLDREENPQLKLLLTATDGGKPEFTGSVSLLILVLD 233
Query: 343 INDNTPEVSITSLSLPISENASLGTVIALITVSDRDSGTNGHVTCSLTPHVPFKLVSTF- 401
NDN P + + EN T++ + SD D G N + S + VP + F
Sbjct: 234 ANDNAPIFDRPVYEVKMYENQVNQTLVIRLNASDSDEGINKEMMYSFSSLVPPTIRRKFW 293
Query: 402 --KNYYSLVLDSALDRESVSAYELVVTARDGGSPSLWATTSVSIEVADVNDNAPAFAQPE 459
+ + ++ A+D E + YE+ V D G+P + +V +E+ D NDN+P
Sbjct: 294 INERTGEIKVNDAIDFEDSNTYEIHVDVTDKGNPPMVGHCTVLVELLDENDNSPEVIVTS 353
Query: 460 YTVFVKENNPPGCHIFTVSAWDADAQENALVSYSLVERRVGERALSSYVSVHAESGKVYA 519
++ VKE+ G I +S D D+ N V+ SL V + +S+Y + ++ +
Sbjct: 354 LSLPVKEDAQVGTVIALISVSDHDSGANGQVTCSLTPH-VPFKLVSTYKNYYS----LVL 408
Query: 520 LQPLDHEEVELLQFQVSARDAGVPPLGSNVTLQVFVLDENDNAPALLAPRAGTAAGAVSE 579
LD E V + V+ARD G PPL + ++ V V D NDNAPA A +
Sbjct: 409 DSALDRERVSAYELVVTARDGGSPPLWATASVSVEVADVNDNAPAF-------AQSEYTV 461
Query: 580 LVPWSVGAGHVVAKVRAVDADSGYNAWLSYEL---QLGTGSARIPFRVGLYTGEISTTRA 636
V + G + V A DAD+ NA +SY L +LG S V +G++ +
Sbjct: 462 FVKENNPPGCHIFTVSAWDADAQENALVSYSLVERRLGERSLSSYVSVHAESGKVYALQP 521
Query: 637 LDEAD 641
LD +
Sbjct: 522 LDHEE 526
>gi|14165394 protocadherin alpha 6 isoform 3 precursor [Homo
sapiens]
Length = 686
Score = 780 bits (2014), Expect = 0.0
Identities = 391/520 (75%), Positives = 447/520 (85%)
Query: 15 LLSLLLLAAWEVGSGQLRYSVPEEAKHGTFVGRIAQDLGLELEELVPRLFRVASKRHGDL 74
LL LLLLAAW+VGSGQL YSVPEEAKHGTFVGRIAQDLGLEL ELVPRLFR+ASK DL
Sbjct: 15 LLPLLLLAAWKVGSGQLHYSVPEEAKHGTFVGRIAQDLGLELAELVPRLFRMASKDREDL 74
Query: 75 LEVNLQNGILFVNSRIDREELCGRSAECSIHVEVIVDRPLQVFHVEVEVKDINDNPPIFP 134
LEVNLQNGILFVNSRIDREELCGRSAECSIH+EVIVDRPLQVFHV+VEV+DINDNPP+FP
Sbjct: 75 LEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVDVEVRDINDNPPLFP 134
Query: 135 MTVKTIRFPESRLLDSRFPLEGASDADIGVNALLSYKLSSSEFFFLDIQANDELSESLSL 194
+ + + ESRL DS FPLEGASDAD+G N++L+YKLSSSE+F LD++ N + ++ + L
Sbjct: 135 VEEQRVLIYESRLPDSVFPLEGASDADVGSNSILTYKLSSSEYFGLDVKINSDDNKQIGL 194
Query: 195 VLGKSLDREETAEVNLLLVATDGGKPELTGTVQILIKVLDVNDNEPTFAQSVYKVKLLEN 254
+L KSLDREE NL L ATDGGKPELTGTVQ+L+ VLDVNDN PTF QS Y+V++ EN
Sbjct: 195 LLKKSLDREEAPAHNLFLTATDGGKPELTGTVQLLVTVLDVNDNAPTFEQSEYEVRIFEN 254
Query: 255 TANGTLVVKLNASDADEGPNSEIVYSLGSDVSSTIQTKFTIDPISGEIRTKGKLDYEEAK 314
NGT V++LNASD DEG N I YS S V++ + F+ID +GEI +G LD+E+
Sbjct: 255 ADNGTTVIRLNASDRDEGANGAISYSFNSLVAAMVIDHFSIDRNTGEIVIRGNLDFEQEN 314
Query: 315 SYEIQVTATDKGTPSMSGHCKISLKLVDINDNTPEVSITSLSLPISENASLGTVIALITV 374
Y+I + ATDKG P M+GHC + ++++D NDN PE+++TSLSLP+ E+A GTVIALI+V
Sbjct: 315 LYKILIDATDKGHPPMAGHCTVLVRILDKNDNVPEIALTSLSLPVREDAQFGTVIALISV 374
Query: 375 SDRDSGTNGHVTCSLTPHVPFKLVSTFKNYYSLVLDSALDRESVSAYELVVTARDGGSPS 434
+D DSG NG V CSLTPHVPFKLVSTFKNYYSLVLDSALDRESVSAYELVVTARDGGSPS
Sbjct: 375 NDLDSGANGQVNCSLTPHVPFKLVSTFKNYYSLVLDSALDRESVSAYELVVTARDGGSPS 434
Query: 435 LWATTSVSIEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAWDADAQENALVSYSL 494
LWAT S+S+EVAD+NDNAPAFAQPEYTVFVKENNPPGCHIFTVSA DADAQENALVSYSL
Sbjct: 435 LWATASLSVEVADMNDNAPAFAQPEYTVFVKENNPPGCHIFTVSARDADAQENALVSYSL 494
Query: 495 VERRVGERALSSYVSVHAESGKVYALQPLDHEEVELLQFQ 534
VERRVGERALSSY+SVHAESGKVYALQPLDHEE+ELLQFQ
Sbjct: 495 VERRVGERALSSYISVHAESGKVYALQPLDHEELELLQFQ 534
Score = 439 bits (1128), Expect = e-123
Identities = 274/623 (43%), Positives = 350/623 (56%), Gaps = 65/623 (10%)
Query: 336 ISLKLVDINDNTPEVSITSLSLPISENASLGTVIALITVSDRDSGTNGHVTCSLTPHVPF 395
+ +++ DINDN P + + I E+ +V L SD D G+N +T L+ F
Sbjct: 119 VDVEVRDINDNPPLFPVEEQRVLIYESRLPDSVFPLEGASDADVGSNSILTYKLSSSEYF 178
Query: 396 ----KLVSTFKNYYSLVLDSALDRESVSAYELVVTARDGGSPSLWATTSVSIEVADVNDN 451
K+ S L+L +LDRE A+ L +TA DGG P L T + + V DVNDN
Sbjct: 179 GLDVKINSDDNKQIGLLLKKSLDREEAPAHNLFLTATDGGKPELTGTVQLLVTVLDVNDN 238
Query: 452 APAFAQPEYTVFVKENNPPGCHIFTVSAWDADAQENALVSYSLVERRVGERALSSYVSVH 511
AP F Q EY V + EN G + ++A D D N +SYS + + + S+
Sbjct: 239 APTFEQSEYEVRIFENADNGTTVIRLNASDRDEGANGAISYSF--NSLVAAMVIDHFSID 296
Query: 512 AESGKVYALQPLDHEEVELLQFQVSARDAGVPPLGSNVTLQVFVLDENDNAPALLAPRAG 571
+G++ LD E+ L + + A D G PP+ + T+ V +LD+NDN P +
Sbjct: 297 RNTGEIVIRGNLDFEQENLYKILIDATDKGHPPMAGHCTVLVRILDKNDNVPEI------ 350
Query: 572 TAAGAVSELVPWSVGAGHVVAKVRAVDADSGYNAWLSYELQLGTGSARIPFR-VGLYTGE 630
A ++S V G V+A + D DSG N ++ L + +PF+ V +
Sbjct: 351 -ALTSLSLPVREDAQFGTVIALISVNDLDSGANGQVNCSL-----TPHVPFKLVSTFKNY 404
Query: 631 ISTT--RALDEADSPRHRLLVLVKDHGEPALTATATVLVSLVESGQAPKASSRAWVGAAG 688
S ALD + L+V +D G P+L ATA++ V + + A ++
Sbjct: 405 YSLVLDSALDRESVSAYELVVTARDGGSPSLWATASLSVEVADMNDNAPAFAQPEYTVFV 464
Query: 689 SEATLVDVNVYLIIAICAVSSLLVLTVLLYTALRCSVPPTEGARAPGKPTLVCSSAVGSW 748
E +++ + A A + +A+ S+
Sbjct: 465 KENNPPGCHIFTVSARDADAQ--------------------------------ENALVSY 492
Query: 749 SYSQQRRQRVCSGEDPPKTDLMAFSPS---LSQGPDSAEEKQLSESEYVGKPRQPNPDWR 805
S ++R GE + + + S + P EE +L + + PRQPNPDWR
Sbjct: 493 SLVERR-----VGERALSSYISVHAESGKVYALQPLDHEELELLQFQ----PRQPNPDWR 543
Query: 806 YSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPTVSSATPEPEAGEVSPPVGAGVNSNSW 865
YSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPTVSSATPEPEAGEVSPPVGAGVNSNSW
Sbjct: 544 YSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPTVSSATPEPEAGEVSPPVGAGVNSNSW 603
Query: 866 TFKYGPGNPKQSGPGELPDKFIIPGSPAIISIRQEPTNSQIDKSDFITFGKKEETKKKKK 925
TFKYGPGNPKQSGPGELPDKFIIPGSPAIISIRQEPTNSQIDKSDFITFGKKEETKKKKK
Sbjct: 604 TFKYGPGNPKQSGPGELPDKFIIPGSPAIISIRQEPTNSQIDKSDFITFGKKEETKKKKK 663
Query: 926 KKKGNKTQEKKEKGNSTTDNSDQ 948
KKKGNKTQEKKEKGNSTTDNSDQ
Sbjct: 664 KKKGNKTQEKKEKGNSTTDNSDQ 686
Score = 173 bits (439), Expect = 6e-43
Identities = 138/472 (29%), Positives = 217/472 (45%), Gaps = 41/472 (8%)
Query: 199 SLDREETAEVNL----LLVATDGGKPELTG------------------TVQILIKVLDVN 236
S DRE+ EVNL L V + + EL G + ++V D+N
Sbjct: 68 SKDREDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVDVEVRDIN 127
Query: 237 DNEPTFAQSVYKVKLLENTANGTLVVKLNASDADEGPNSEIVYSLGSDVSSTIQTKFTID 296
DN P F +V + E+ ++ ASDAD G NS + Y L S + K D
Sbjct: 128 DNPPLFPVEEQRVLIYESRLPDSVFPLEGASDADVGSNSILTYKLSSSEYFGLDVKINSD 187
Query: 297 PISG-EIRTKGKLDYEEAKSYEIQVTATDKGTPSMSGHCKISLKLVDINDNTPEVSITSL 355
+ K LD EEA ++ + +TATD G P ++G ++ + ++D+NDN P +
Sbjct: 188 DNKQIGLLLKKSLDREEAPAHNLFLTATDGGKPELTGTVQLLVTVLDVNDNAPTFEQSEY 247
Query: 356 SLPISENASLGTVIALITVSDRDSGTNGHVTCSLTPHVPFKLVSTF---KNYYSLVLDSA 412
+ I ENA GT + + SDRD G NG ++ S V ++ F +N +V+
Sbjct: 248 EVRIFENADNGTTVIRLNASDRDEGANGAISYSFNSLVAAMVIDHFSIDRNTGEIVIRGN 307
Query: 413 LDRESVSAYELVVTARDGGSPSLWATTSVSIEVADVNDNAPAFAQPEYTVFVKENNPPGC 472
LD E + Y++++ A D G P + +V + + D NDN P A ++ V+E+ G
Sbjct: 308 LDFEQENLYKILIDATDKGHPPMAGHCTVLVRILDKNDNVPEIALTSLSLPVREDAQFGT 367
Query: 473 HIFTVSAWDADAQENALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEEVELLQ 532
I +S D D+ N V+ SL V + +S++ + ++ + LD E V +
Sbjct: 368 VIALISVNDLDSGANGQVNCSLTPH-VPFKLVSTFKNYYS----LVLDSALDRESVSAYE 422
Query: 533 FQVSARDAGVPPLGSNVTLQVFVLDENDNAPALLAPRAGTAAGAVSELVPWSVGAGHVVA 592
V+ARD G P L + +L V V D NDNAPA P + V + G +
Sbjct: 423 LVVTARDGGSPSLWATASLSVEVADMNDNAPAFAQPE-------YTVFVKENNPPGCHIF 475
Query: 593 KVRAVDADSGYNAWLSYEL---QLGTGSARIPFRVGLYTGEISTTRALDEAD 641
V A DAD+ NA +SY L ++G + V +G++ + LD +
Sbjct: 476 TVSARDADAQENALVSYSLVERRVGERALSSYISVHAESGKVYALQPLDHEE 527
Score = 39.7 bits (91), Expect = 0.013
Identities = 50/196 (25%), Positives = 84/196 (42%), Gaps = 18/196 (9%)
Query: 484 AQENALVSYSLVER--RVGERALSSYVSVHAESGKVYALQPLDHEEVELLQFQVSARDAG 541
AQ+ L LV R R+ + + V+ ++G ++ +D EE+ + S
Sbjct: 49 AQDLGLELAELVPRLFRMASKDREDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEV 108
Query: 542 VPPLGSNVT-LQVFVLDENDNAPALLAPRAGTAAGAVSELVPWSVGAGHVVAKVRAVDAD 600
+ V + V V D NDN P L P +P SV A DAD
Sbjct: 109 IVDRPLQVFHVDVEVRDINDNPP--LFPVEEQRVLIYESRLPDSV-----FPLEGASDAD 161
Query: 601 SGYNAWLSYELQLGTGSARIPFRVGLYTGE-----ISTTRALDEADSPRHRLLVLVKDHG 655
G N+ L+Y+L + S V + + + + ++LD ++P H L + D G
Sbjct: 162 VGSNSILTYKL---SSSEYFGLDVKINSDDNKQIGLLLKKSLDREEAPAHNLFLTATDGG 218
Query: 656 EPALTATATVLVSLVE 671
+P LT T +LV++++
Sbjct: 219 KPELTGTVQLLVTVLD 234
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.130 0.371
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,739,336
Number of Sequences: 37866
Number of extensions: 1874899
Number of successful extensions: 14538
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 79
Number of HSP's that attempted gapping in prelim test: 6841
Number of HSP's gapped (non-prelim): 1298
length of query: 948
length of database: 18,247,518
effective HSP length: 112
effective length of query: 836
effective length of database: 14,006,526
effective search space: 11709455736
effective search space used: 11709455736
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 67 (30.4 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.