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Search of human proteins with 89993693
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|89993693 mouse double minute 2 homolog isoform MDM2d [Homo
sapiens]
(172 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|89993693 mouse double minute 2 homolog isoform MDM2d [Homo sa... 347 4e-96
gi|89993690 mouse double minute 2 homolog isoform MDM2a [Homo sa... 307 3e-84
gi|89993689 mouse double minute 2 homolog isoform MDM2 [Homo sap... 307 3e-84
gi|223890201 mouse double minute 2 homolog isoform MDM2g [Homo s... 296 5e-81
gi|223890205 mouse double minute 2 homolog isoform MDM2h [Homo s... 243 8e-65
gi|89993691 mouse double minute 2 homolog isoform MDM2e [Homo sa... 204 4e-53
gi|223890197 mouse double minute 2 homolog isoform MDM2f [Homo s... 193 5e-50
gi|89993692 mouse double minute 2 homolog isoform MDM2b [Homo sa... 178 2e-45
gi|223890207 mouse double minute 2 homolog isoform MDM2i [Homo s... 105 1e-23
gi|88702791 mouse double minute 4 homolog [Homo sapiens] 105 2e-23
gi|87299628 biorientation of chromosomes in cell division 1-like... 29 2.3
gi|224967054 SRY (sex determining region Y)-box 6 isoform 4 [Hom... 28 3.0
gi|224967050 SRY (sex determining region Y)-box 6 isoform 3 [Hom... 28 3.0
gi|70909338 SRY (sex determining region Y)-box 6 isoform 1 [Homo... 28 3.0
gi|71037389 SRY (sex determining region Y)-box 6 isoform 2 [Homo... 28 3.0
gi|226246554 hypothetical protein LOC643677 [Homo sapiens] 28 3.0
gi|239756039 PREDICTED: hypothetical protein LOC643677 [Homo sap... 28 3.0
gi|239750569 PREDICTED: hypothetical protein LOC643677 [Homo sap... 28 3.0
gi|239744870 PREDICTED: hypothetical protein LOC643677 [Homo sap... 28 3.0
gi|151301204 unc-51-like kinase 4 [Homo sapiens] 28 3.0
gi|27262628 nuclear autoantigenic sperm protein isoform 2 [Homo ... 28 3.0
gi|27262634 nuclear autoantigenic sperm protein isoform 1 [Homo ... 28 3.0
gi|54112382 F-box and leucine-rich repeat protein 10 isoform a [... 28 5.1
gi|54112380 F-box and leucine-rich repeat protein 10 isoform b [... 28 5.1
gi|27436910 partner and localizer of BRCA2 [Homo sapiens] 27 6.7
gi|22035569 GC-rich sequence DNA-binding factor candidate isofor... 27 6.7
gi|22035565 GC-rich sequence DNA-binding factor candidate isofor... 27 6.7
gi|16933537 glomulin [Homo sapiens] 27 6.7
gi|148762958 D4, zinc and double PHD fingers, family 3 [Homo sap... 27 6.7
>gi|89993693 mouse double minute 2 homolog isoform MDM2d [Homo
sapiens]
Length = 172
Score = 347 bits (889), Expect = 4e-96
Identities = 172/172 (100%), Positives = 172/172 (100%)
Query: 1 MVRSRQMCNTNMSVPTDGAVTTSQIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVL 60
MVRSRQMCNTNMSVPTDGAVTTSQIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVL
Sbjct: 1 MVRSRQMCNTNMSVPTDGAVTTSQIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVL 60
Query: 61 FYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEHRKIYTMIYRNLVVVNQQE 120
FYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEHRKIYTMIYRNLVVVNQQE
Sbjct: 61 FYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEHRKIYTMIYRNLVVVNQQE 120
Query: 121 SSDSGTSVSENRCHLEGGSDQKDLVQELQEEKPKTKKRVWNLVCPLMPLNLV 172
SSDSGTSVSENRCHLEGGSDQKDLVQELQEEKPKTKKRVWNLVCPLMPLNLV
Sbjct: 121 SSDSGTSVSENRCHLEGGSDQKDLVQELQEEKPKTKKRVWNLVCPLMPLNLV 172
>gi|89993690 mouse double minute 2 homolog isoform MDM2a [Homo
sapiens]
Length = 249
Score = 307 bits (787), Expect = 3e-84
Identities = 154/159 (96%), Positives = 155/159 (97%)
Query: 1 MVRSRQMCNTNMSVPTDGAVTTSQIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVL 60
MVRSRQMCNTNMSVPTDGAVTTSQIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVL
Sbjct: 1 MVRSRQMCNTNMSVPTDGAVTTSQIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVL 60
Query: 61 FYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEHRKIYTMIYRNLVVVNQQE 120
FYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEHRKIYTMIYRNLVVVNQQE
Sbjct: 61 FYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEHRKIYTMIYRNLVVVNQQE 120
Query: 121 SSDSGTSVSENRCHLEGGSDQKDLVQELQEEKPKTKKRV 159
SSDSGTSVSENRCHLEGGSDQKDLVQELQEEKP + V
Sbjct: 121 SSDSGTSVSENRCHLEGGSDQKDLVQELQEEKPSSSHLV 159
>gi|89993689 mouse double minute 2 homolog isoform MDM2 [Homo
sapiens]
Length = 497
Score = 307 bits (787), Expect = 3e-84
Identities = 154/159 (96%), Positives = 155/159 (97%)
Query: 1 MVRSRQMCNTNMSVPTDGAVTTSQIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVL 60
MVRSRQMCNTNMSVPTDGAVTTSQIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVL
Sbjct: 1 MVRSRQMCNTNMSVPTDGAVTTSQIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVL 60
Query: 61 FYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEHRKIYTMIYRNLVVVNQQE 120
FYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEHRKIYTMIYRNLVVVNQQE
Sbjct: 61 FYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEHRKIYTMIYRNLVVVNQQE 120
Query: 121 SSDSGTSVSENRCHLEGGSDQKDLVQELQEEKPKTKKRV 159
SSDSGTSVSENRCHLEGGSDQKDLVQELQEEKP + V
Sbjct: 121 SSDSGTSVSENRCHLEGGSDQKDLVQELQEEKPSSSHLV 159
>gi|223890201 mouse double minute 2 homolog isoform MDM2g [Homo
sapiens]
Length = 444
Score = 296 bits (759), Expect = 5e-81
Identities = 148/153 (96%), Positives = 149/153 (97%)
Query: 7 MCNTNMSVPTDGAVTTSQIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQY 66
MCNTNMSVPTDGAVTTSQIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQY
Sbjct: 1 MCNTNMSVPTDGAVTTSQIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQY 60
Query: 67 IMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEHRKIYTMIYRNLVVVNQQESSDSGT 126
IMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEHRKIYTMIYRNLVVVNQQESSDSGT
Sbjct: 61 IMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEHRKIYTMIYRNLVVVNQQESSDSGT 120
Query: 127 SVSENRCHLEGGSDQKDLVQELQEEKPKTKKRV 159
SVSENRCHLEGGSDQKDLVQELQEEKP + V
Sbjct: 121 SVSENRCHLEGGSDQKDLVQELQEEKPSSSHLV 153
>gi|223890205 mouse double minute 2 homolog isoform MDM2h [Homo
sapiens]
Length = 442
Score = 243 bits (619), Expect = 8e-65
Identities = 122/132 (92%), Positives = 123/132 (93%)
Query: 1 MVRSRQMCNTNMSVPTDGAVTTSQIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVL 60
MVRSRQMCNTNMSVPTDGAVTTSQIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVL
Sbjct: 1 MVRSRQMCNTNMSVPTDGAVTTSQIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVL 60
Query: 61 FYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEHRKIYTMIYRNLVVVNQQE 120
FYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEHRKIYTMIYRNLVVVNQQE
Sbjct: 61 FYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEHRKIYTMIYRNLVVVNQQE 120
Query: 121 SSDSGTSVSENR 132
+ S R
Sbjct: 121 ENSDELSGERQR 132
>gi|89993691 mouse double minute 2 homolog isoform MDM2e [Homo
sapiens]
Length = 179
Score = 204 bits (518), Expect = 4e-53
Identities = 101/104 (97%), Positives = 102/104 (98%)
Query: 1 MVRSRQMCNTNMSVPTDGAVTTSQIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVL 60
MVRSRQMCNTNMSVPTDGAVTTSQIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVL
Sbjct: 1 MVRSRQMCNTNMSVPTDGAVTTSQIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVL 60
Query: 61 FYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEHRK 104
FYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKE +
Sbjct: 61 FYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEFER 104
>gi|223890197 mouse double minute 2 homolog isoform MDM2f [Homo
sapiens]
Length = 452
Score = 193 bits (491), Expect = 5e-50
Identities = 109/159 (68%), Positives = 110/159 (69%), Gaps = 45/159 (28%)
Query: 1 MVRSRQMCNTNMSVPTDGAVTTSQIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVL 60
MVRSRQMCNTNMSVPTDGAVTTSQIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKE
Sbjct: 1 MVRSRQMCNTNMSVPTDGAVTTSQIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKE-- 58
Query: 61 FYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEHRKIYTMIYRNLVVVNQQE 120
KIYTMIYRNLVVVNQQE
Sbjct: 59 -------------------------------------------KIYTMIYRNLVVVNQQE 75
Query: 121 SSDSGTSVSENRCHLEGGSDQKDLVQELQEEKPKTKKRV 159
SSDSGTSVSENRCHLEGGSDQKDLVQELQEEKP + V
Sbjct: 76 SSDSGTSVSENRCHLEGGSDQKDLVQELQEEKPSSSHLV 114
>gi|89993692 mouse double minute 2 homolog isoform MDM2b [Homo
sapiens]
Length = 111
Score = 178 bits (451), Expect = 2e-45
Identities = 90/101 (89%), Positives = 94/101 (93%), Gaps = 1/101 (0%)
Query: 1 MVRSRQMCNTNMSVPTDGAVTTSQIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVL 60
MVRSRQMCNTNMSVPTDGAVTTSQIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVL
Sbjct: 1 MVRSRQMCNTNMSVPTDGAVTTSQIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVL 60
Query: 61 FYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKE 101
FYLGQYIMTKRLYDEKQQHIVYCSND +LF + S++E
Sbjct: 61 FYLGQYIMTKRLYDEKQQHIVYCSND-CANLFPLVDLSIRE 100
>gi|223890207 mouse double minute 2 homolog isoform MDM2i [Homo
sapiens]
Length = 295
Score = 105 bits (263), Expect = 1e-23
Identities = 53/54 (98%), Positives = 53/54 (98%)
Query: 7 MCNTNMSVPTDGAVTTSQIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVL 60
MCNTNMSVPTDGAVTTSQIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKE L
Sbjct: 1 MCNTNMSVPTDGAVTTSQIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEDL 54
>gi|88702791 mouse double minute 4 homolog [Homo sapiens]
Length = 490
Score = 105 bits (262), Expect = 2e-23
Identities = 57/135 (42%), Positives = 87/135 (64%), Gaps = 2/135 (1%)
Query: 34 VRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFG 93
VRPK LLK+L + GAQ + +T+KEV+ YLGQYIM K+LYD+++QH+VYC DLLG+L G
Sbjct: 27 VRPKLPLLKILHAAGAQGEMFTVKEVMHYLGQYIMVKQLYDQQEQHMVYCGGDLLGELLG 86
Query: 94 VPSFSVKEHRKIYTMIYRNLVVVNQQESSDSGTSVSENRCHLEGGSDQKDLVQELQEEKP 153
SFSVK+ +Y M+ +NLV + ++D+ +++ + H Q D +++ EE
Sbjct: 87 RQSFSVKDPSPLYDMLRKNLVTL-ATATTDAAQTLALAQDHSMDIPSQ-DQLKQSAEESS 144
Query: 154 KTKKRVWNLVCPLMP 168
++KR P +P
Sbjct: 145 TSRKRTTEDDIPTLP 159
>gi|87299628 biorientation of chromosomes in cell division 1-like
[Homo sapiens]
Length = 3051
Score = 28.9 bits (63), Expect = 2.3
Identities = 15/58 (25%), Positives = 30/58 (51%)
Query: 101 EHRKIYTMIYRNLVVVNQQESSDSGTSVSENRCHLEGGSDQKDLVQELQEEKPKTKKR 158
E K YT + NL+++N+ +S +++ E D + + +E+K KT+K+
Sbjct: 288 EEIKNYTKEHNNLILLNKDVQQESSEQKNKSTDKGEKKPDSNEKGERKKEKKEKTEKK 345
>gi|224967054 SRY (sex determining region Y)-box 6 isoform 4 [Homo
sapiens]
Length = 841
Score = 28.5 bits (62), Expect = 3.0
Identities = 17/76 (22%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 84 SNDLLGDLFGVPSFSVKEHRKIYTMIYRNLVVVNQQESSDSGTSVSENRCHLEGGSDQKD 143
+++LLG++ G P ++ R++ TMI L+ + +Q + +E Q D
Sbjct: 183 TSELLGEIKGTPESLAEKERQLSTMI-TQLISLREQLLAAHDEQKKLAASQIEKQRQQMD 241
Query: 144 LVQELQEEKPKTKKRV 159
L ++ QE+ + ++++
Sbjct: 242 LARQQQEQIARQQQQL 257
>gi|224967050 SRY (sex determining region Y)-box 6 isoform 3 [Homo
sapiens]
Length = 801
Score = 28.5 bits (62), Expect = 3.0
Identities = 17/76 (22%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 84 SNDLLGDLFGVPSFSVKEHRKIYTMIYRNLVVVNQQESSDSGTSVSENRCHLEGGSDQKD 143
+++LLG++ G P ++ R++ TMI L+ + +Q + +E Q D
Sbjct: 170 TSELLGEIKGTPESLAEKERQLSTMI-TQLISLREQLLAAHDEQKKLAASQIEKQRQQMD 228
Query: 144 LVQELQEEKPKTKKRV 159
L ++ QE+ + ++++
Sbjct: 229 LARQQQEQIARQQQQL 244
>gi|70909338 SRY (sex determining region Y)-box 6 isoform 1 [Homo
sapiens]
Length = 804
Score = 28.5 bits (62), Expect = 3.0
Identities = 17/76 (22%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 84 SNDLLGDLFGVPSFSVKEHRKIYTMIYRNLVVVNQQESSDSGTSVSENRCHLEGGSDQKD 143
+++LLG++ G P ++ R++ TMI L+ + +Q + +E Q D
Sbjct: 173 TSELLGEIKGTPESLAEKERQLSTMI-TQLISLREQLLAAHDEQKKLAASQIEKQRQQMD 231
Query: 144 LVQELQEEKPKTKKRV 159
L ++ QE+ + ++++
Sbjct: 232 LARQQQEQIARQQQQL 247
>gi|71037389 SRY (sex determining region Y)-box 6 isoform 2 [Homo
sapiens]
Length = 808
Score = 28.5 bits (62), Expect = 3.0
Identities = 17/76 (22%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 84 SNDLLGDLFGVPSFSVKEHRKIYTMIYRNLVVVNQQESSDSGTSVSENRCHLEGGSDQKD 143
+++LLG++ G P ++ R++ TMI L+ + +Q + +E Q D
Sbjct: 170 TSELLGEIKGTPESLAEKERQLSTMI-TQLISLREQLLAAHDEQKKLAASQIEKQRQQMD 228
Query: 144 LVQELQEEKPKTKKRV 159
L ++ QE+ + ++++
Sbjct: 229 LARQQQEQIARQQQQL 244
>gi|226246554 hypothetical protein LOC643677 [Homo sapiens]
Length = 7081
Score = 28.5 bits (62), Expect = 3.0
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 119 QESSDSGTSVSENRCHLEGGSDQKDLVQELQEEKPKTKKRVWNLVCPLMP 168
+ESSD+G H E SD K L L +++ K +++V ++ L P
Sbjct: 5108 KESSDAGRIACPEATHGELSSDVKQLKAHLLQKEEKDREKVADMTSVLDP 5157
>gi|239756039 PREDICTED: hypothetical protein LOC643677 [Homo sapiens]
Length = 6929
Score = 28.5 bits (62), Expect = 3.0
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 119 QESSDSGTSVSENRCHLEGGSDQKDLVQELQEEKPKTKKRVWNLVCPLMP 168
+ESSD+G H E SD K L L +++ K +++V ++ L P
Sbjct: 4956 KESSDAGRIACPEATHGELSSDVKQLKAHLLQKEEKDREKVADMTSVLDP 5005
>gi|239750569 PREDICTED: hypothetical protein LOC643677 [Homo sapiens]
Length = 6929
Score = 28.5 bits (62), Expect = 3.0
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 119 QESSDSGTSVSENRCHLEGGSDQKDLVQELQEEKPKTKKRVWNLVCPLMP 168
+ESSD+G H E SD K L L +++ K +++V ++ L P
Sbjct: 4956 KESSDAGRIACPEATHGELSSDVKQLKAHLLQKEEKDREKVADMTSVLDP 5005
>gi|239744870 PREDICTED: hypothetical protein LOC643677 [Homo sapiens]
Length = 6929
Score = 28.5 bits (62), Expect = 3.0
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 119 QESSDSGTSVSENRCHLEGGSDQKDLVQELQEEKPKTKKRVWNLVCPLMP 168
+ESSD+G H E SD K L L +++ K +++V ++ L P
Sbjct: 4956 KESSDAGRIACPEATHGELSSDVKQLKAHLLQKEEKDREKVADMTSVLDP 5005
>gi|151301204 unc-51-like kinase 4 [Homo sapiens]
Length = 1275
Score = 28.5 bits (62), Expect = 3.0
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 119 QESSDSGTSVSENRCHLEGGSDQKDLVQELQEEKPKTKK 157
QESS S+S N G D K+L+Q Q + K K
Sbjct: 289 QESSVEDLSLSRNTMECSGPQDSKELLQNSQSRQAKGHK 327
>gi|27262628 nuclear autoantigenic sperm protein isoform 2 [Homo
sapiens]
Length = 788
Score = 28.5 bits (62), Expect = 3.0
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 118 QQESSDSGTSVSENRCHLEGGSDQKDLVQELQEEKPK 154
++E S SGT V E C +GG +++ V EEKPK
Sbjct: 240 EEEKSVSGTDVQEE-CREKGGQEKQGEVIVSIEEKPK 275
>gi|27262634 nuclear autoantigenic sperm protein isoform 1 [Homo
sapiens]
Length = 790
Score = 28.5 bits (62), Expect = 3.0
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 118 QQESSDSGTSVSENRCHLEGGSDQKDLVQELQEEKPK 154
++E S SGT V E C +GG +++ V EEKPK
Sbjct: 242 EEEKSVSGTDVQEE-CREKGGQEKQGEVIVSIEEKPK 277
>gi|54112382 F-box and leucine-rich repeat protein 10 isoform a
[Homo sapiens]
Length = 1336
Score = 27.7 bits (60), Expect = 5.1
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 15 PTDGAVTTSQIPASEQETL-VRPKPLLLKLLKSVGAQKDTYTMK 57
PTDG+ + + P+ +QE L +PK L+ LK + + ++K
Sbjct: 439 PTDGSTSPTSTPSEDQEALGKKPKAPALRFLKRTLSNESEESVK 482
>gi|54112380 F-box and leucine-rich repeat protein 10 isoform b
[Homo sapiens]
Length = 1265
Score = 27.7 bits (60), Expect = 5.1
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 15 PTDGAVTTSQIPASEQETL-VRPKPLLLKLLKSVGAQKDTYTMK 57
PTDG+ + + P+ +QE L +PK L+ LK + + ++K
Sbjct: 408 PTDGSTSPTSTPSEDQEALGKKPKAPALRFLKRTLSNESEESVK 451
>gi|27436910 partner and localizer of BRCA2 [Homo sapiens]
Length = 1186
Score = 27.3 bits (59), Expect = 6.7
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 29 EQETLVRPKPLLLKLLKSVGAQKDTYTMKE-VLFYLGQYIMTKRLYDEKQQHI 80
E E L +PK L L+ + A+K + T+ E +LF Y+ T R Q+ +
Sbjct: 371 ESEILSQPKSLSLEATSPLSAEKHSCTVPEGLLFPAEYYVRTTRSMSNCQRKV 423
>gi|22035569 GC-rich sequence DNA-binding factor candidate isoform 2
[Homo sapiens]
Length = 815
Score = 27.3 bits (59), Expect = 6.7
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 136 EGGSDQKDLVQELQEEKPKT 155
E G D+ D+ E +EEKPKT
Sbjct: 181 EHGEDEMDMESEKEEEKPKT 200
>gi|22035565 GC-rich sequence DNA-binding factor candidate isoform 1
[Homo sapiens]
Length = 917
Score = 27.3 bits (59), Expect = 6.7
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 136 EGGSDQKDLVQELQEEKPKT 155
E G D+ D+ E +EEKPKT
Sbjct: 181 EHGEDEMDMESEKEEEKPKT 200
>gi|16933537 glomulin [Homo sapiens]
Length = 594
Score = 27.3 bits (59), Expect = 6.7
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
Query: 132 RCHLEGGSDQKDLVQELQEEKPKT--KKRVWNLVCPLM 167
RC EG +DQ L++ +Q EK K K WNLV P++
Sbjct: 35 RCIEEGHTDQ--LLEIIQNEKNKVIIKNMGWNLVGPVV 70
>gi|148762958 D4, zinc and double PHD fingers, family 3 [Homo
sapiens]
Length = 357
Score = 27.3 bits (59), Expect = 6.7
Identities = 13/45 (28%), Positives = 27/45 (60%)
Query: 114 VVVNQQESSDSGTSVSENRCHLEGGSDQKDLVQELQEEKPKTKKR 158
V ++ES V EN ++E G++++DL +++ + K +T+ R
Sbjct: 131 VDAREEESIQEIQRVLENDENVEEGNEEEDLEEDIPKRKNRTRGR 175
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.132 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,422,290
Number of Sequences: 37866
Number of extensions: 264327
Number of successful extensions: 832
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 808
Number of HSP's gapped (non-prelim): 34
length of query: 172
length of database: 18,247,518
effective HSP length: 95
effective length of query: 77
effective length of database: 14,650,248
effective search space: 1128069096
effective search space used: 1128069096
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.